#NEXUS [written Wed Aug 26 10:23:44 BRT 2015 by Mesquite version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=19; TAXLABELS 'Caldanaerobacter subterraneus tengcongensis_NP_622546.1' 'Caldanaerobacter subterraneus yonseiensis_ERM93010.1' 'Caldanaerobacter subterraneus pacificus_CDSM653_0933' 'Thermoanaerobacter siderophilus WP_006570153.1' 'Thermoanaerobacter ethanolicus WP_003870979.1' 'Thermoanaerobacter thermohydrosulfuricus WP_004401666.1' 'Thermoanaerobacter wiegelii YP_004819693.1' 'Thermoanaerobacter ethanolicus WP_003866930.1' 'Thermoanaerobacter pseudethanolicus YP_001665442.1' 'Thermoanaerobacter mathranii YP_003676616.1' 'Thermoanaerobacter italicus YP_003476670.1' 'Thermoanaerobacter sp. YP_001663746.1' 'Coprothermobacter_proteolyticus_DSM_5265_YP_002246551.1' 'Thermoanaerobacterium xylanolyticum YP_004471283.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003851724.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007298421.1' 'Thermoanaerobacterium saccharolyticum YP_006392729.1' Thermoanaerobacterium_saccharolyticum_ACA51661.1 'Coprothermobacter platensis WP_018962529.1' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=628; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'Caldanaerobacter subterraneus tengcongensis_NP_622546.1' ---------------MDKVRVTIDGITVEVPSYYTVLEAAKEAGIDIPTLCYLKEINQIGACRICLVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKIREARRLNLELILSNHDR-NCLTCVRSTNCELQALAKRLGVEEI-RF---EGENIKYPIDDASPAVVRDPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIMVCPVGAIYEKDHTKRVYEALADDKKYVVAQTAPAVRVALGEEFGMPVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGSELLERIKHGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLDPKDIFVVSIMPCTAKKLEIEREEM-IRNGMKDVDAVLTTRELARMIKEMGIDFVNLKDEEFDEPLGMSTGAGAIFGATGGVMEAALRTVAEIVEGRDIGKIDFEEVRGLEGVREATITI-DGM-DIKIAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EEVKKLRAKAIYEIDKNLPIRKSHENPAIKRLYEEFLGYPLSEKSHELLHTHYSRKELYPLVK------------------- 'Caldanaerobacter subterraneus yonseiensis_ERM93010.1' ---------------MDKVRVTIDGITVEVPSYYTVLEAAKEAGIDIPTLCYLKEINQIGACRICLVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKIREARRLNLELILSNHDR-NCLTCVRSTNCELQALAKRLGVEEI-RF---EGENIRYPIDDGSPAVVRDPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIMVCPVGAIYEKDHTKRVYEALADDKKYVVAQTAPAVRVALGEEFGMPVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGSELLERIKHGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLDPKDIFVVSIMPCTAKKLEIEREEM-IRNGMKDVDAVLTTRELARMIKEMGIDFVNLKDEEFDEPLGMSTGAGAIFGATGGVMEAALRTVAEIVEGRDIGKIDFEEVRGLEGVREATITI-DGM-DIKIAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EEVKKLRAKAIYEIDKNLPIRKSHENPAIKRLYEEFLGHPLSEKSHELLHTHYSRKELYPLVK------------------- 'Caldanaerobacter subterraneus pacificus_CDSM653_0933' ---------------MDKVRVTIDGITVEVPSYYTVLEAAKEAGIDIPTLCYLKEINQIGACRICLVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKIREARRLNLELILSNHDR-NCLTCVRSTNCELQALAKRLGVEEI-RF---EGENIRYPIDDGSPAVVRDPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIMVCPVGAIYEKDHTKRVYEALADDKKYVVAQTAPAVRVALGEEFGMPVGTIVTGKMAAALRRMGFDAVFDTNFAADLTIMEEGSELLERIKHGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLDPKDIFVVSIMPCTAKKLEIEREEM-IRNGMKDVDAVLTTRELARMIKEMGIDFVNLKDEEFDEPLGMSTGAGAIFGATGGVMEAALRTVAEIVEGRDIGKIDFEEVRGLEGVREATITI-DGM-DIKIAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EEVKKLRAKAIYEIDKNLPIRKSHENPAIKRLYEEFLGHPLSEKSHELLHTHYSRKELYPLVK------------------- 'Thermoanaerobacter siderophilus WP_006570153.1' ---------------MDKVRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKVREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVDEI-RF---EGENIKYSIDDASPSVVRDPNKCVLCRRCVAVCSQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIQVCPVGAIYEKDHTRRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYVVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLKDEEYDEPLGMSTGAGVIFGATGGVMEAALRTVADIVEGKDLDKFDYEEVRGLEGVREATIRI-DGM-DIKVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK------------------- 'Thermoanaerobacter ethanolicus WP_003870979.1' ---------------MDKVRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKVREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVDEI-RF---EGENIKYSIDDASPSVVRDPNKCVLCRRCVAVCSQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIQVCPVGAIYEKDHTRRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYVVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLKDEEYDEPLGMSTGAGVIFGATGGVMEAALRTVADIVEGKDLDKFDYEEVRGLEGVREATIRI-DGM-DVKVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK------------------- 'Thermoanaerobacter thermohydrosulfuricus WP_004401666.1' ---------------MDKVHVTIDGITVEVPSYYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKVREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVDEI-RF---EGENIKYSIDDASPSVVRDPNKCVLCRRCVAVCSQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIPVCPVGAIYEKDHTRRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYVVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLKDEEYDEPLGMSTGAGVIFGATGGVMEAALRTVADIVEGKDLDKFDYEEVRGLEGVREATIRI-DGM-DIKVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK------------------- 'Thermoanaerobacter wiegelii YP_004819693.1' ---------------MDKVRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKVREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVDEI-RF---EGENIKYSIDDASPSVVRDPNKCVLCRRCVAVCSQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIQVCPVGAIYEKDHTRRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALRRMGFDAVFDTDFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYVVSIMPCTAKKLEIERPEM-QHKGIKDVDAVLTTRELARMIKEMGIDFVNLKDEEYDEPLGMSTGAGVIFGATGGVMEAALRTVADIVEGKDLDKFDYEEVRGLEGVREATIRI-DGM-DIKVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK------------------- 'Thermoanaerobacter ethanolicus WP_003866930.1' ---------------MDKVRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKVREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVDEI-RF---EGENIKYSIDNASPSIVRDPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFNTMVAPSFGRSLKDSPCISCGQCIVVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALRRMGFDAIFDTNFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAAVIFGATGGVMEAALRTVADIVEGKDLDKFDYEEVRGLEGVREATIRI-DGK-DIKVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK------------------- 'Thermoanaerobacter pseudethanolicus YP_001665442.1' ---------------MDKVRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTAKIREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVNEI-RF---EGENIKYSIDNASPAIVRDPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAAVIFGATGGVMEAALRTVADIVEGKDLDKFDYEEVRGLEGVREATIRI-DGK-DIKVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK------------------- 'Thermoanaerobacter mathranii YP_003676616.1' ---------------MDKVRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTAKIREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVNEI-RF---EGENIKYSIDNASPAIVRDPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKEGLNPEDIYVVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAGVIFGATGGVMEAALRTVADIVEGRELDKVDFEEVRGLEGVREATIKI-DGM-DIKVAIANGTGNAKKLLDKIKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-GKVKELRAKAIYEADKSLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVR------------------- 'Thermoanaerobacter italicus YP_003476670.1' ---------------MDKVRVTIDGITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTAKIREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVNEI-RF---EGENIKYSIDNASPAIVRDPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALKRMGFDAVFDTDFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKEGLNPEDIYVVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAGVIFGATGGVMEAALRTVADIVEGRELDKVDFEEVRGLEGVREATIKI-DGM-DIKVAIANGTGNAKKLLDKIKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-GKVKELRAKAIYEADKSLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVR------------------- 'Thermoanaerobacter sp. YP_001663746.1' ---------------MDKVRVMIDSITVEVPSHYTVLEAAKEAGIDIPTLCYLKEINQIGACRICVVEIEGVRN--LQTSCTYPVFDGMKVYTNTPKVREARKLNLELILSNHDR-SCLTCIRNTNCELQSLSKKLGVDEI-RF---EGENIKYSIDNASPSIVRDPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFNTMVAPSFGRSLKDSPCISCGQCIEVCPVGAIYEKDHTKRVYEALADEKKYVVAQTAPAVRVALGEEFGMPIGSIVTGKMVAALRRMGFDAIFDTNFAADLTIMEEGSELLERLKNGGKLPMITSCSPGWIAFCEKYYPEFIDNLSTCKSPHMMMGALVKSYYAEKKGLNPEDIYIVSIMPCTAKKLEIERPEM-QHNGIKDVDAVLTTRELARMIKEMGIDFVNLPDEEYDEPLGMSTGAAVIFGATGGVMEAALRTVADIVEGKDLDKFDYEEVRGLEGVREATIRI-DGK-DIKVAIANGTGNAKKLLDKVKAGEVEYHFIEVMGCPGGCIMGGGQPIHNPNE--M-EKVKELRAKAIYEADKNLPIRKSHKNPAIQKLYEEFLGSPLSEKSHHLLHTHYSKKELYPLVK------------------- 'Coprothermobacter_proteolyticus_DSM_5265_YP_002246551.1' ---------------MDKVTVTIDGITLEVPSNYTVLQACREAGIDIPTLCYAEVINEIGSCRLCVVEVDGVRN--LPASCIYPVQNGMNIRTNTPRVREARRVNLELILSNHDR-SCLTCIRNTKCELQDLAERFGITDI-EF---QGENVNYPLDDASPAIVRNPNKCVLCRRCIAECQEVQNVFAIGAVNRGFDTLVSAPFYVSLNDSPCISCGQCITACPTGALYEKDHIQRVYRALADKRKHVVVQTAPAVRVALGEEFGMPVGSIVTGKMVAALRRLGFEVVFDTDFGADLTIMEEGSELIERLKYGGKLPMITSCSPGWINFCEKYYPDFVENLSTCKSPHMMLGALIKTYYAEKMGWNPEDVYVVSVMPCTAKKVEIERPEN-MHDGLQDVDAVLTTRELARMIKEAGIDFVNLPDEEFDQPLGMSTGAAVIFGATGGVMEAALRTVSEIVEGKPLDKIDFEEVRGLDGVREATVTV-DGL-DLKLAIVNGTGNAKKLLDKIRSGEAEYHFIEIMGCPGGCITGGGQPIHHPNE--M-AEVRKLRAAAIYQADKNLPLRKSHENPAIKQIYEEYLGHPLGEKSHHLLHTHYSSKPLYKVTR------------------- 'Thermoanaerobacterium xylanolyticum YP_004471283.1' ---------------MDKVRITIDGIPVEVPANYTVLQAAKYANIDIPTLCYLKEINEIGACRLCVVEIKGVRN--LQTSCVYPVSDGMEIYTNTPRVREARKSNLELILSAHDR-SCLTCVRSGNCELQDLSRKFGIDEI-RF---MGENIKYQKDESSPSIVRDPNKCVLCRRCVATCNNVQNVFAIGMVNRGFKTIVAPSFGRGLNESPCISCGQCIEACPVGAIYEKDHTKMVYDALLDEKKYVVAQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRLNEGGKLPMITSCSPGWINYCERYYPEFIDNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKGEIDRPQM-IVDGMKDVDAVLTTRELARMIKQSGIDFVSLPDSEYDNPLGESSGAAVIFGATGGVMEAALRTVADIVEGRDIENFEYEEVRGLEGIKEAKIDI-GGK-EIKIAVANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNEKDL---VRESRLKAIYEADKDLPIRKSHKNPMITKLYEEFLTSPLGEKSHHLLHTTYSKKDLYPMND------------------- 'Thermoanaerobacterium thermosaccharolyticum YP_003851724.1' ---------------MDKVRITIDGIPAEVPANYTVLQAAKYANIEIPTLCYLEEINEIGACRLCVVEIKGVRN--LQASCVYPVSDGMEIFTNSPRVREARRSNLELILSAHDR-SCLTCVRSGNCELQELSRKFGIDEI-SF---MGENIKYPKDDSSPSIVRDPNKCVLCRRCVATCNNVQNVFAIGMVNRGFKTIVAPSFGRSLNDSPCISCGQCIEACPVGAIYEKDHTKMVYDALLDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRINEGGKLPMITSCSPGWINYCERYYPEFIDNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQM-MTDGMKDVDAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFGATGGVMEAALRTVADIVEGKDIENFEYKEVRGLEGIREANINI-GGK-EIKVAIANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNEKDL---VRNKRLNAIYEADKDLPIRKSHKNPMITKLYEEFLISPLGEKSHHLLHTSYSKKELYPMND------------------- 'Thermoanaerobacterium thermosaccharolyticum YP_007298421.1' ---------------MDKVRITIDGIPAEVPANYTVLQAAKYANIEIPTLCYLEEINEIGACRLCVVEIKGVRN--LQASCVYPVSDGMEIFTNTPRVREARRSNLELILSAHDR-SCLTCVRSGNCELQELSRKFGIDEI-RF---MGENIKYPKDDSSPSIVRDPNKCVLCRRCVATCNNVQNVFAIGMVNRGFKTIVAPSFGRSLNDSPCISCGQCIEACPVGAIYEKDHTKMVYDALLDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRINEGGKLPMITSCSPGWINYCERYYPEYIENLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQM-IVDGMKDVDAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFGATGGVMEAALRTVADIVEGKDIENFEYKEVRGLEGIREANINI-GGK-EIKVAIANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNEKDL---VRNKRLNAIYEADKDLPIRKSHKNPMITKLYKEFLISPLGEKSHHLLHTSYSKKELYPMND------------------- 'Thermoanaerobacterium saccharolyticum YP_006392729.1' ---------------MDKVRITIDGIPAEVPANYTVLQAAKYAKIEIPTLCYLEEINEIGACRLCVVEIKGVRN--LQASCVYPVSDGMEIYTNTPRVREARRSNLELILSAHDR-SCLTCVRSGNCELQDLSRKSGIDEI-RF---MGENIKYQKDESSPSIVRDPNKCVLCRRCVATCNNVQNVFAIGMVNRGFKTIVAPSFGRGLNESPCISCGQCIEACPVGAIYEKDHTKIVYDALLDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRLNEGGKLPMITSCSPGWINYCERYYPEFIDNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQM-IVDGMKDVDAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFGATGGVMEAALRTVADIVEGKDIENFEYEEVRGLEGIKEAKIDI-GGK-EIKIAVANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNEKDL---VRKSRLKAIYEADKDLPIRKSHKNPMITKLYEEFLISPLGEKSHHLLHTTYSKKDLYPMND------------------- Thermoanaerobacterium_saccharolyticum_ACA51661.1 ------------MQNMDKVRITIDGIPAEVPANYTVLQAAKYAKIEIPTLCYLEEINEIGACRLCVVEIKGVRN--LQASCVYPVSDGMEIYTNTPRVREARRSNLELILSAHDR-SCLTCVRSGNCELQDLSRKSGIDEI-RF---MGENIKYQKDESSPSIVRDPNKCVLCRRCVATCNNVQNVFAIGMVNRGFKTIVAPSFGRGLNESPCISCGQCIEACPVGAIYEKDHTKIVYDALLDEKKYVVVQTAPAVRVALGEEFGMPYGSIVTGKMVSALKRLGFDKVFDTDFAADLTIIEEGNELLKRLNEGGKLPMITSCSPGWINYCERYYPEFIDNLSTCKSPHMMMGAIIKSYFAEKEGIDPKDIFVVSIMPCTAKKYEIDRPQM-IVDGMKDVDAVLTTRELARMIKQSGIDFVNLPDSEYDNPLGESSGAGVIFGATGGVMEAALRTVADIVEGKDIENFEYEEVRGLEGIKEAKIDI-GGK-EIKIAVANGTGNAKKLLDKIKNGEAEYHFIEVMGCPGGCIMGGGQPIHNPNEKDL---VRKSRLKAIYEADKDLPIRKSHKNPMITKLYEEFLISPLGEKSHHLLHTTYSKKDLYPMND------------------- 'Coprothermobacter platensis WP_018962529.1' ---------------MDKVTVTIDGVTVEVPANYTVLQACREAGIDIPTLCYAEGLNEIGSCRLCVVEIEGAKA--LAASCIYPVANGMKIHTNTPRVRQARKVNLELILSNHDR-SCLTCVRNTNCELQNLANRFGVSEI-EF---QGENIDYPLDNVSPAIVRNPNKCVLCRRCISECQNVQNVFAIGAVNRGIKTLVSSPFYLSLNDSPCISCGQCITVCPTGALYEKDHISRVYDAIADKKKHVVVQTAPAVRVALGEEFGMPVGTIVTGKMAAALRRLGFDVVFDTDFGADLTIMEEGSELIERLKYGGKLPMITSCSPGWINFCEKYYPDFLENLSSCKSPHMMLGAVIKSYYAQKMGWNPEDVFVVSVMPCTAKKVEIERPEN-MHDGLQDVDAVLTTRELARMIKEAGIDFVNLPDEDFDQPLGMSTGAAVIFGATGGVMEAALRTVSELVEGRPLDKINFEEVRGLEGVREASVTL-DGM-ELKLAIVNGTGNARKLLDKIRSGEAEYHFIEVMGCPGGCITGGGQPIHHPNE--M-QEVRKLRASAIYKADENLPLRKSHENPAIKQIYAEYLGHPLSEQSHHLLHTHYDQRPLYRFTHKV----------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 628; END; BEGIN NOTES; TAXABITS TAXA = Taxa NAME = newlyAddedTaxon on = 1 - 19; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 628; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 628; END; BEGIN TREES; Title 'Trees from "hydA.tre"'; LINK Taxa = Taxa; TRANSLATE [0] n0 'Caldanaerobacter subterraneus tengcongensis_NP_622546.1', [1] n1 'Caldanaerobacter subterraneus yonseiensis_ERM93010.1', [2] n2 'Caldanaerobacter subterraneus pacificus_CDSM653_0933', [3] n3 'Thermoanaerobacter siderophilus WP_006570153.1', [4] n4 'Thermoanaerobacter ethanolicus WP_003870979.1', [5] n5 'Thermoanaerobacter thermohydrosulfuricus WP_004401666.1', [6] n6 'Thermoanaerobacter wiegelii YP_004819693.1', [7] n7 'Thermoanaerobacter ethanolicus WP_003866930.1', [8] n8 'Thermoanaerobacter pseudethanolicus YP_001665442.1', [9] n9 'Thermoanaerobacter mathranii YP_003676616.1', [10] n10 'Thermoanaerobacter italicus YP_003476670.1', [11] n11 'Thermoanaerobacter sp. YP_001663746.1', [12] n12 'Coprothermobacter_proteolyticus_DSM_5265_YP_002246551.1', [13] n13 'Thermoanaerobacterium xylanolyticum YP_004471283.1', [14] n14 'Thermoanaerobacterium thermosaccharolyticum YP_003851724.1', [15] n15 'Thermoanaerobacterium thermosaccharolyticum YP_007298421.1', [16] n16 'Thermoanaerobacterium saccharolyticum YP_006392729.1', [17] n17 Thermoanaerobacterium_saccharolyticum_ACA51661.1, [18] n18 'Coprothermobacter platensis WP_018962529.1'; TREE tree_1 = ((((n17:0.000001,n16:0.000001)0.8960:0.005897,n13:0.020883)0.8950:0.019423,(n15:0.003795,n14:0.007491)0.8480:0.011674)1.0000:0.13141,((n18:0.077503,n12:0.051896)1.0000:0.165331,(((((n10:0.001864,n9:0.000001)0.9980:0.020877,n8:0.000001)0.4810:0.007527,(n11:0.003747,n7:0.001875)0.9550:0.007558)0.9210:0.011632,(((n6:0.001883,n3:0.000001)0.0000:0.000001,n4:0.001881)0.0000:0.000001,n5:0.005681)0.6960:0.0055)0.8270:0.029582,((n2:0.000001,n1:0.000001)0.9130:0.003796,n0:0.000001)0.9980:0.053928)0.9800:0.05441)0.1430:0.036011)root; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1440595424257; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7888483588723721332; tell It; setDefaultOrder 18 17 16 13 14 15 12 11 9 8 7 10 6 2 4 3 1 0 5; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8198337650460383020; mqVersion 304; checksumv 0 3 473020277 null getNumChars 628 numChars 628 getNumTaxa 19 numTaxa 19 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.23568689499813E14 sumSquares 1.23568689499813E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 234; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7888483588723721332 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7888483588723721332; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 466 392; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8198337650460383020 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 466 392; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;