#NEXUS [written Wed Aug 26 10:30:39 BRT 2015 by Mesquite version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS 'Caldanaerobacter subterraneus pacificus_CDSM653_0932' 'Caldanaerobacter subterraneus tengcongensis_NP_622545.1' 'Caldanaerobacter subterraneus yonseiensis_ERM93009.1' 'Coprothermobacter platensis WP_018962528.1' 'Coprothermobacter proteolyticus YP_002246550.1' 'Thermoanaerobacter ethanolicus WP_003870980.1' 'Thermoanaerobacter italicus YP_003476669.1' 'Thermoanaerobacter pseudethanolicus YP_001665443.1' 'Thermoanaerobacter siderophilus WP_006570152.1' 'Thermoanaerobacter sp. YP_001663747.1' 'Thermoanaerobacter wiegelii YP_004819692.1' 'Thermoanaerobacter WP_004401669.1' Thermoanaerobacterium_aotearoense_ETO38913.1 'Thermoanaerobacterium saccharolyticum YP_006392730.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003851723.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007298420.1' 'Thermoanaerobacterium xylanolyticum YP_004471284.1' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=653; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'Caldanaerobacter subterraneus pacificus_CDSM653_0932' ------------ML-----------------------------------YRSHVMVCGGTGCTSSGSDEVAERFIEEIKKAGLDKEILVVRTGCFGLCELGPVVVVYPEGVFYSRVKPEYVPEIVEEHLLKGRPVRKYIYGESLEE--KAI---KPLEETPFFRKQRRIALRNCGVINPEDIREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWEFAYK--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSIMGKRGEPRPRPPFPAVKGVWGKPTIINNVETFANIPPIILNGGEWFASIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPGGKKFKAVQIGGPSGGCIPAELLDTPIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLELLDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIKEKRCPAGVCTALLSFVIDPEKCKACGICAKNCPVGAISG-KPKTPYVIDQEKCIKCGTCIDKCPFGAIYKK- 'Caldanaerobacter subterraneus tengcongensis_NP_622545.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSGSDEVAERFIEEIKKAGLDKEILVVRTGCFGLCELGPVVVVYPEGVFYSRVKPEYVPEIVEEHLLKGRPVRKYIYGESLEE--KAI---KPLEETPFFRKQRRIALRNCGVINPEDIREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWEFAYK--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSIMGKRGEPRPRPPFPAVKGVWGKPTIINNVETFANIPPIILNGGEWFASIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPGGKKFKAVQIGGPSGGCIPAELLDTPIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLELLDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIKEKRCPAGVCTALLSFVIDPEKCKACGICAKNCPVGAISG-KPKTPYVIDQEKCIKCGTCIDKCPFGAIYKK- 'Caldanaerobacter subterraneus yonseiensis_ERM93009.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSGSDEVAERFIEEIKKTGLDKEILVVRTGCFGLCELGPVVVVYPEGVFYSRVKPEYVPEIVEEHLLKGRPVRKYIYGESLEE--KAI---KPLEETPFFRKQRRIALRNCGVINPEDIREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWEFAYK--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSIMGKRGEPRPRPPFPAVKGVWGKPTIINNVETFANIPPIILNGGEWFASIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPGGKKFKAVQIGGPSGGCIPAELLDTPIDYDSLTSAGAMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLELLDKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIKEKRCPAGVCTALLSFVIDPEKCKACGICAKNCPVGAISG-KPKTPYVIDQEKCIKCGTCIDKCPFGAIYKK- 'Coprothermobacter platensis WP_018962528.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSGSDSVADAFVNELKKNGLDQEVAVIRTGCFGLCELGPVVVVYPEGVFYSKMKPEYVPEIVEEHLLKGRPVKKYLFGETVTE--EKI---KPLEETTFYRKQERIVLRNCGIIDPEDIEEAIAMGAYEALGKVLTTMTPEQVIHEIKKSGLRGRGGGGFPTGQKWDFAYR--QKET-PKYVVCNADEGDPGAFMDRSVMEGDPHAVLEGMAIAGYAIGAEHGVIYVRAEYPLAVKRLQIAIKQAKEYGLLGENIFGTGFNFDVEIRFGAGAFVCGEETALLNSVMGRRGEPRPRPPYPAVKGLWEKPTIINNVETLANVPAIINNGSEWFANIGTEKSKGTKVFALTGKVNRTGLIEVPMGTTLREIIFDIGGGIPDGKKFKAVQIGGPSGGCIPEQHLDTKIDYDSLISLGAMMGSGGLVVMDEDTCMVNVAKFFLEFLVDESCGKCAPCRIGTKRMLEILDKITSGKGEPEDIDRLEELATTIKDTALCGLGQTAPNAVLSTLRYFRDEYDAHINQKKCPAGVCQALLSYTIVADKCRGCGLCARNCPVNAISG-QLKQPYTIDQEACIKCGTCFEKCPFDAVVKA- 'Coprothermobacter proteolyticus YP_002246550.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSGSDNVAAAFVNEIKKAGLDKEVAVIRTGCFGLCELGPVVVIYPEGVFYSKMKPEYVPEIVEEHLLKGRPVTKYLFGETVTE--KEI---KPLEETTFYKKQMRVALRNCGIIDPEDIEEAIAMGAYEALGKVLTTMTPEQVIDEMKKSGLRGRGGGGFPTGLKWEFAYK--QKET-PKYVVCNADEGDPGAFMDRSIMEGDPHSVLEGMAIAGYAIGANHGVIYVRAEYPLAVKRLQIAIKQAREYGLLGDNIFGTDFSFDVEIRFGAGAFVCGEETALLNSVMGRRGEPRPRPPYPAVKGLWNKPTIINNVETFANVPVIISNGAEWFSSIGTEKSKGTKVFALTGKVNRTGLIEVPMGTTLREIIFDIGGGIPDGKRFKAVQIGGPSGGCIPEEHLDTVIDYDSLISLGAMMGSGGLVVMDEDTCMVNVAKFFLEFIVDESCGKCAPCRIGTKRMLEILDKITSGKGEPEDIDRLEKLATTIKDTALCGLGQTAPNAVLSTLRYFRNEYEAHINQKKCPAGVCQALLSYTIVADKCKGCGLCARNCPVNAISG-ELKQPHVINQEACIKCGTCFEKCPFGAIVKQ- 'Thermoanaerobacter ethanolicus WP_003870980.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSDSDKVAERFTEEIKKAGLDKEVLVVRTGCFGLCELGPVVVVYPEGVFYSRVKPDYVPEIVEEHLLKGRPVKKYLYGESVTE--KAI---KPLEETPFFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIKEKRCPAGVCQALLRFYIDPDKCKACGICAKNCPVNAISG-KPKVPYVIDQDKCIKCGTCIEKCPFGAIYKK- 'Thermoanaerobacter italicus YP_003476669.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSDSDKVAERFTEEIKKAGLDKEVLVVRTGCFGLCELGPVVVVYPEGVFYSRVKPDYVPEIVEEHLLKGRPVKKYLYGESVTE--REI---KPLEETPFFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVIEAMAIAGYAIGANYGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWSKPTIINNVETFANIPPIILNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIKEKKCPAGVCQALLRFYIDPDKCKGCGICAKNCPVNAISG-KPRQPYVIDQDKCIKCGTCIEKCPFGAIYKK- 'Thermoanaerobacter pseudethanolicus YP_001665443.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSDSDKVAERFTEEIKKAGLDKEVLVVRTGCFGLCELGPVVVVYPEGVFYSRVKPDYVPEIVEEHLLKGRPVKKYLYGESVTE--REI---KPLEETPFFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIDEVKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLELLEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIKEKKCPAGVCQALLRFYIDPDKCKGCGICAKNCPVNAISG-KPRQPYVIDQDKCIKCGTCIEKCPFGAIYKK- 'Thermoanaerobacter siderophilus WP_006570152.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSDSDKVAERFTEEIKKAGLDKEVLVVRTGCFGLCELGPVVVVYPEGVFYSRVKPDYVPEIVEEHLLKGRPVKKYLYGESVTE--KAI---KPLEETPFFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNGKKFKAAQTGGPSGGCIPTEHLDTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIKEKRCPAGVCQALLRFYIDPDKCKACGICAKNCPVNAISG-KPKVPYVIDQDKCIKCGTCIEKCPFGAIYKK- 'Thermoanaerobacter sp. YP_001663747.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSDSDKVAERFTEEIKKAGLDKEVLVVRTGCFGLCELGPVVVVYPEGVFYSRVKPDYVPEIVEEHLLKGRPVKKYLYGESVTE--REI---KPLEETPFFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIDEVKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRRMLEVLDKITSGKGEEGDIERLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIKEKRCPAGVCQALLRFYIAPDKCKGCGICAKNCPVNAISG-KTKEPYVIDQDKCIKCGTCIEKCPFGAIYKK- 'Thermoanaerobacter wiegelii YP_004819692.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSDSDKVAERFTEEIKKAGLDKEVLVVRTGCFGLCELGPVVVVYPEGVFYSRVKPDYVPEIVEEHLLKGRPVKKYLYGESVTE--KAI---KPLEETPFFRKQKRIALRNCGIINPEDIREAIAFDGYKALAKVLTQMTPKEVIEEVKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIKEKRCPAGVCQALLRFYIDPDKCKACGICAKNCPVNAISG-KPKVPYVIDQDKCIKCGTCIEKCPFGAIYKK- 'Thermoanaerobacter WP_004401669.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSDSDKVAERFTEEIKKAGLDKEVLVVRTGCFGLCELGPVVVVYPEGVFYSRVKPDYVPEIVEEHLLKGRPVKKYLYGESVTE--KAI---KPLEETPFFRKQKRIALRNCGIINPEDIREAIAFDGYRALAKVLTQMTPKEVIEEVKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKIAIEQAREYGLLGKNIFGTGFDFDIEIRLGAGAFVCGEETALLNSVMGRRGEPRPRPPFPAVKGVWDKPTIINNVETFANIPPIILNGAEWFSSIGTEKSKGTKVFALTGKVNNTGLIEVPMGTTLREIIYEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLINVGSMMGSGGLVVMDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTRRMLEILEKITSGKGEEGDIEKLEELAKTIKATALCGLGQTAPNPVLSTIRYFRDEYEAHIKEKRCPAGVCQALLRFYIDPDKCKGCGICAKNCPVNAISG-KPKVPYVIDQDKCIKCGTCIEKCPFGAIYKK- Thermoanaerobacterium_aotearoense_ETO38913.1 ------------ML-----------------------------------YRSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGLDKEVQVVRTGCFGLCELGPVVVVYPEGVFYSCVKEEYVPEIVEEHLLKGRVVKKYLYGESVTE--EGI---KPLEETAFFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVINEIKKSGLRGRGGGGFPTGIKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETALLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSKGTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLLNIGSMKGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRRMLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTIRYFRDEYEAHIKEKRCPAGVCQALLKFRIDPDKCKGCGICAKNCPTNAISG-KVKQPHVIDQDKCIKCGTCMDKCPFDAIYKK- 'Thermoanaerobacterium saccharolyticum YP_006392730.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGLDKEVQVVRTGCFGLCELGPVVVVYPEGVFYSCVKEEYVPEIVEEHLLKGRVVKKYLYGESVTE--EGI---KPLEETAFFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVINEIKKSGLRGRGGGGFPTGIKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETALLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSKGTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRRMLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTIRYFRDEYEAHIKEKRCPAGVCQALLKFRIDPDKCKGCGICAKNCPTNAISG-KVKQPHVIDQDKCIKCGTCMDKCPFDAIYKK- 'Thermoanaerobacterium thermosaccharolyticum YP_003851723.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGLDKEIQVVRTGCFGLCELGPVVVVYPEGVFYSRVKEEYVPEIVEEHLLKGRIVKKYLYGESVTE--EGI---KPLEETGFFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVISEIKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETALLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFSSIGTEKSKGTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLLSIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRRMLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTLRYFRDEYEAHIKEKRCPAGVCQALLRFRIDPEKCKGCGICAKNCPTNAISG-KVKQPHVIDQDKCIKCGTCMDKCPFDAIYKK- 'Thermoanaerobacterium thermosaccharolyticum YP_007298420.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSNSDRIAKCFEEEIANKGLDKEIQVVRTGCFGLCELGPVVVVYPEGVFYSRVKEEYVPEIVEEHLLKGRIVKKYLYGESVTE--EGI---KPLEETGFFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEEVISEIKKSGLRGRGGGGFPTGVKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETALLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFSSIGTEKSKGTKVFALGGKINNTGLVEIPMGTTLREIIFEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLLSIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTRRMLELLNKITSGKGEEGDIEKLETLANSIKASSLCGLGQTAPNPVLSTLRYFRDEYEAHIKEKRCPAGVCQALLKFRIDPEKCKGCGICAKNCPTNAISG-KVKQPHVIDQDKCIKCGTCMDKCPFDAIYKK- 'Thermoanaerobacterium xylanolyticum YP_004471284.1' ------------ML-----------------------------------YRSHVMVCGGTGCTSSNSDRVAKCFEEEIANKGLDKEVQVVRTGCFGLCELGPVVVVYPEGVFYSRVKEEYVPEIVEEHLLKGRVVKKYLYGESVTE--EGI---KPLEETTFFKKQQRVALRNCGLINPEDIKEAIAFDGYKALAKVLTEMTPEQVIAEIKKSGLRGRGGGGFPTGIKWEFAYN--QKET-PKYVVCNADEGDPGAFMDRSVLEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLQIAIDQAREYGLLGKNIFNTGFDFDIEIRLGAGAFVCGEETALLNSVMGKRGEPRPRPPFPAVKGVWEKPTIINNVETYANIPAIILNGAEWFASIGTEKSKGTKVFALGGKINNTGLVEVPMGTTLREIIFEIGGGIPNGKKFKAAQTGGPSGGCIPAEHLDTPIDYDSLLNIGSMMGSGGLIVMDEDNCMVDIAKFFLEFTVDESCGKCSPCRIGTKRMLELLNKITSGKGEEGDIEKLEALANSIKASALCGLGQTAPNPVLSTIKYFRDEYEAHIKEKRCPAGVCQALLKFRIDPDKCKGCGICAKNCPTNAISG-KVKQPHVIDQDKCIKCGTCMDKCPFDAIYKK- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 653; END; BEGIN NOTES; TAXABITS TAXA = Taxa NAME = newlyAddedTaxon on = 1 - 17; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 653; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 653; END; BEGIN TREES; Title 'Trees from "hydB.tre"'; LINK Taxa = Taxa; TRANSLATE [0] n0 'Caldanaerobacter subterraneus pacificus_CDSM653_0932', [1] n1 'Caldanaerobacter subterraneus tengcongensis_NP_622545.1', [2] n2 'Caldanaerobacter subterraneus yonseiensis_ERM93009.1', [3] n3 'Coprothermobacter platensis WP_018962528.1', [4] n4 'Coprothermobacter proteolyticus YP_002246550.1', [5] n5 'Thermoanaerobacter ethanolicus WP_003870980.1', [6] n6 'Thermoanaerobacter italicus YP_003476669.1', [7] n7 'Thermoanaerobacter pseudethanolicus YP_001665443.1', [8] n8 'Thermoanaerobacter siderophilus WP_006570152.1', [9] n9 'Thermoanaerobacter sp. YP_001663747.1', [10] n10 'Thermoanaerobacter wiegelii YP_004819692.1', [11] n11 'Thermoanaerobacter WP_004401669.1', [12] n12 Thermoanaerobacterium_aotearoense_ETO38913.1, [13] n13 'Thermoanaerobacterium saccharolyticum YP_006392730.1', [14] n14 'Thermoanaerobacterium thermosaccharolyticum YP_003851723.1', [15] n15 'Thermoanaerobacterium thermosaccharolyticum YP_007298420.1', [16] n16 'Thermoanaerobacterium xylanolyticum YP_004471284.1'; TREE tree_1 = ((((n9:0.008007,(n11:0.000001,((n8:0.002006,n5:0.000001)0.0000:0.000001,n10:0.002004)0.4220:0.002006)0.9600:0.011691)0.4040:0.004414,(n6:0.010115,n7:0.000001)0.8750:0.004894)0.8670:0.012991,((n3:0.063308,n4:0.03381)1.0000:0.162289,(n2:0.002036,(n1:0.000001,n0:0.000001)0.0000:0.000001)0.9970:0.051988)0.8440:0.021371)0.9960:0.071011,(((n12:0.001944,n13:0.000001)0.7210:0.002463,(n14:0.001944,n15:0.000001)0.9920:0.017282)0.7980:0.007461,n16:0.008645)0.9690:0.042405)root; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1440595839992; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5854871551631382735; tell It; setDefaultOrder 11 10 9 7 8 3 5 6 2 0 4 1 12 13 14 15 16; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1946236073968617237; mqVersion 304; checksumv 0 3 2777157376 null getNumChars 653 numChars 653 getNumTaxa 17 numTaxa 17 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.12105142014633E14 sumSquares 1.12105142014633E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 234; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 802 631; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5854871551631382735 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5854871551631382735; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 568 559; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1946236073968617237 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 568 559; setLocation 51 24; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;