#NEXUS
[written Wed Aug 26 10:35:23 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=12;
	TAXLABELS
		'Caldanaerobacter subterraneus pacificus_CDSM653_0929' 'Caldanaerobacter subterraneus tengcongensis_NP_622542.1' 'Caldanaerobacter subterraneus yonseiensis_ERM93006.1' 'Thermoanaerobacter italicus YP_003476666.1' 'Thermoanaerobacter mathranii YP_003676612.1' 'Thermoanaerobacter wiegelii YP_004819689.1' 'Thermoanaerobacter pseudethanolicus YP_001665446.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003851720.1' 'Thermoanaerobacterium xylanolyticum YP_004471287.1' 'Thermoanaerobacterium saccharolyticum YP_006392733.1' 'Coprothermobacter proteolyticus YP_002246547.1' 'Coprothermobacter platensis WP_018962525.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=202;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus pacificus_CDSM653_0929'      ---------------MQGMKEASLEEKLVEKF---GKDKVEKFKKSIEDYREIPGSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSGKYKINLCMGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACALAPVMMINGEVFGRLTPNDVDEILKKFE---------------
	'Caldanaerobacter subterraneus tengcongensis_NP_622542.1'   ---------------MQGMKEASLEEKLVEKF---GKDKVEKFKKSIENYREIPGSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSGKYKINLCMGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACALAPVMMINGEVFGRLTPNDVDEILKKFE---------------
	'Caldanaerobacter subterraneus yonseiensis_ERM93006.1'      ---------------MQGMKEASLEEKLVEKF---GKDKVEKFKKSIEDYREIPGSLIAVMNDAQEIFGYLPIEVQLFISQEMKVPLTEIFGISTFYSRFTLKPSGKYKINLCMGTACYVRGAAMLLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACALAPVMMINGEVFGRLTPNDVDEILKKFE---------------
	'Thermoanaerobacter italicus YP_003476666.1'                ------------------------MDALYQKF---GEEKVERFKKALEELKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLSEIFGIATFYSRFTLKPSGKYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGETTEDGKFSLEPTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKFE---------------
	'Thermoanaerobacter mathranii YP_003676612.1'               ------------------------MDALCQKF---GEEKVERFKKALEELKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSGKYKINLCMGTACYVRGAAMVLEKIKEKLGIEVGEATEDGKFSLEPTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKFE---------------
	'Thermoanaerobacter wiegelii YP_004819689.1'                ------------------------METLYQKF---GKEKVERFKKALEELKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSGKYKINLCMGTACYVRGAAMVLGKIKEKLGIQVGETTPDGKFSLEPTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKFE---------------
	'Thermoanaerobacter pseudethanolicus YP_001665446.1'        ------------------------METLCRKF---GEEKVERFKKALEELKNIPGSLIAIMNEAQEIFGYLPIEVQLYISKEMNVPLTEIFGIATFYSRFTLKPSGKYKINLCMGTACYVRGAAMVLEKIKEKLGIQVGETTPDGKFSLEPTRCLGACGLAPVMMINGEVFGRLTPDDVDEILSKFE---------------
	'Thermoanaerobacterium thermosaccharolyticum YP_003851720.1' ------------------------MQAIYEKF---DEEKVNKFKKVIDELKNVDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFGIATFYSRFTLKPSGKYKIGLCLGTACYVKGSAMVLDKLKEKLGISVGDVTSDGKFSLEATRCLGACGLAPVMMINGEVFGRLTPDDVDDILKKFD---------------
	'Thermoanaerobacterium xylanolyticum YP_004471287.1'        ------------------------MQAIYEKF---SQENINKLKKVIDQLKDTDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFGIATFYSRFTLKPSGKYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLEATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKFD---------------
	'Thermoanaerobacterium saccharolyticum YP_006392733.1'      ------------------------MQAIYEKF---SEENINKLKKVIDQLKDTDGSLIAVMNEAQEIFGYLPIEVQQFISEEMNVPLTEIFGIATFYSRFTLKPSGKYKIGVCLGTACYVKGSAMVLDKLKEKLGISVGDVTGDGKFSLEATRCLGACGLAPVMMINGEVFGRLTPDDVEDILKKFD---------------
	'Coprothermobacter proteolyticus YP_002246547.1'            ------------------------MEQLYELF---GIDRVEEFRAKLEELKKVPGSMISILNEAQEMFGYIPFQVQELISKETGVPLTEIFGIVTFYSRFSIVPAGKYKISLCLGTACYVRGSGQILEKLKENLGINEGETTSDGMFSLEAARCLGACALAPVMMINGEVYGRLTPDEAVKVIQRIKKQDLSQAAAE---VE
	'Coprothermobacter platensis WP_018962525.1'                ------------------------MEQLYELF---GTDRVEEFRAKLDELKNVPGSMISILNEAQEIFGYVPFEVQELISRETGVPLTEIFGIVTFYSRFSIIPAGKYKISLCLGTACYVKGSGQILEKLEEKLGIKEGNTTSDGMFSLSAARCLGACALAPVMMINGEVYGRLTPDSAVKVIEKIKQQDLSQAASE---VE

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  202;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  12;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  202;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  202;
END;

BEGIN TREES;
	Title 'Trees from "hydC.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter subterraneus pacificus_CDSM653_0929',
[1] 		n1 'Caldanaerobacter subterraneus tengcongensis_NP_622542.1',
[2] 		n2 'Caldanaerobacter subterraneus yonseiensis_ERM93006.1',
[3] 		n3 'Thermoanaerobacter italicus YP_003476666.1',
[4] 		n4 'Thermoanaerobacter mathranii YP_003676612.1',
[5] 		n5 'Thermoanaerobacter wiegelii YP_004819689.1',
[6] 		n6 'Thermoanaerobacter pseudethanolicus YP_001665446.1',
[7] 		n7 'Thermoanaerobacterium thermosaccharolyticum YP_003851720.1',
[8] 		n8 'Thermoanaerobacterium xylanolyticum YP_004471287.1',
[9] 		n9 'Thermoanaerobacterium saccharolyticum YP_006392733.1',
[10] 		n10 'Coprothermobacter proteolyticus YP_002246547.1',
[11] 		n11 'Coprothermobacter platensis WP_018962525.1';
	TREE tree_1 = ((n11:0.054575,n10:0.062816)1.0000:0.296303,(((n9:0.000001,n8:0.000001)0.9110:0.023302,n7:0.000001)0.8560:0.04601,(((n6:0.000001,n5:0.007767)0.9040:0.015401,(n4:0.007563,n3:0.007548)0.0000:0.000001)0.8650:0.026544,(n2:0.000001,(n1:0.000001,n0:0.000001)0.0000:0.000001)0.9670:0.053767)0.9430:0.074525)0.4980:0.063894)root;

END;


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end;