#NEXUS
[written Wed Aug 26 10:50:22 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=13;
	TAXLABELS
		'Caldanaerobacter_subterraneus_subsp.pacificus_CDSM653_108' 'Caldanaerobacter subterraneus tengcongensis_NP_621830.1' 'Caldanaerobacter subterraneus yonseiensis_ERM91341.1' 'Thermoanaerobacter wiegelii YP_004818935.1' 'Thermoanaerobacter WP_004399984.1' 'Thermoanaerobacter ethanolicus WP_003868944.1' 'Thermoanaerobacter siderophilus WP_006569906.1' 'Thermoanaerobacter italicus YP_003477423.1' 'Thermoanaerobacter mathranii YP_003677319.1' 'Thermoanaerobacterium saccharolyticum YP_006391305.1' 'Thermoanaerobacterium xylanolyticum YP_004469848.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003850797.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007297555.1' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=307;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter_subterraneus_subsp.pacificus_CDSM653_108' --------------------------------------------------------------------------MEEIVIIRDVLETNKNIASENKAIKDERNILMVNLIGSPGAGKTSFIIKAIEHMK---VPCAVIEGDVTS-DIDARKMAERN-IPVVQINTGGACHLNAASVNKALQALNFDN-GIVFIENVGNLICPSAFELGEDFKLAMANVPEGDDKPYKYPALFSKAKAVVLNKIDMLPYFEFDRKFFYDGVRAL-NQEAPIFEVSARTGEGFGEFARWLEEEYHKFRQGK--------
	'Caldanaerobacter subterraneus tengcongensis_NP_621830.1'   --------------------------------------------------------------------------MEEIVIIRDVLETNKNIASENKAIKDERNILMVNLIGSPGAGKTSFIIKAIEHMK---VPCAVIEGDVTS-DIDARKMAERN-IPVVQINTGGACHLNAASVNKALQALNFDN-GIVFIENVGNLICPSAFELGEDFKLAMANVPEGDDKPYKYPALFSKAKAVVLNKIDMLPYFEFDRKFFYDGVRAL-NQEAPIFEVSARTGEGFGEFARWLEEEYHKFRQGK--------
	'Caldanaerobacter subterraneus yonseiensis_ERM91341.1'      --------------------------------------------------------------------------MEEIVIIRDVLETNKNIASENKAIKDERNILMVNLIGSPGAGKTSFIIKAIEHIK---VPCAVIEGDVTS-DIDARKMAERN-IPVVQINTGGACHLNAASVNKALQALNFDN-GIVFIENVGNLICPSAFELGEDFKLAMANVPEGDDKPYKYPALFSKAKAVVLNKIDMLPYFEFDKKFFYDGVRAL-NQEAPIFEVSARTGEGFGEFARWLEEEYHKFRQGK--------
	'Thermoanaerobacter wiegelii YP_004818935.1'                --------------------------------------------------------------------------MEEIVIIRDVLEANNNVASENKAIKDERNILMVNIIGSPGAGKTSFILRAIEHLK---VPCGVIEGDVTS-DIDAKKMAEKK-IPVVQINTGGSCHLNAGSVNRALQSLSFDN-GIVFIENVGNLICPSEFELGEDFKLAMANVPEGDDKPYKYPALFTKAKAVVLNKIDMLPYFEFDKKFFYDGIRAL-NPDAPIFEVSARTGEGFGEFAKWLEEEYQKFRQNK--------
	'Thermoanaerobacter WP_004399984.1'                         --------------------------------------------------------------------------MEEIVIIRDVLEANNNVASENKAIKDERNILMVNIIGSPGAGKTSFILRAIEHLK---VPCGVIEGDVTS-DIDAKKMAEKK-IPVVQINTGGSCHLNAGSVNRALQSLSFDN-GIVFIENVGNLICPSEFELGEDFKLAMANVPEGDDKPYKYPALFTKAKAVVLNKIDMLPYFEFDKKFFYDGIRAL-NPDAPIFEISARTGEGFGEFAKWLEEEYQKFRQNK--------
	'Thermoanaerobacter ethanolicus WP_003868944.1'             --------------------------------------------------------------------------MEEIVIIRDVLEVNNNVAHENKVIKDEKNILMVNLIGSPGAGKTTFILRAIENLK---VPCAVIEGDVTS-DIDARKMAERN-IPVVQINTGGSCHLNAGSVNKALKALSFDD-GIVFIENVGNLICPSAFELGEDFKLAMANVPEGDDKPYKYPALFTKAKAVVLNKIDMLPFFEFNKKFFYDGIRAL-NPDAPIFEVSARTGEGFGEFAKWLEEEYHKFRQDK--------
	'Thermoanaerobacter siderophilus WP_006569906.1'            -------------------------------------------------------------------------MEEIIVIIRDVLEANNNVASENKAIKDERNILMVNIIGSPGAGKTSFILRAIEHLK---VPCGVIEGDVTS-DIDAKKMAEKK-IPVVQINTGGSCHLNAGSVNRALQSLSFDN-GIVFIENVGNLICPSEFELGEDFKLAMANVPEGDDKPYKYPALFTKAKAVVLNKIDMLPYFEFDKKFFYDGIRAL-NPDAPIFEVSARTGEGFGEFAKWLEEEYQKFRQNK--------
	'Thermoanaerobacter italicus YP_003477423.1'                --------------------------------------------------------------------------MEEIIIIRDVLEANNNVASENKAIKDERNILMVNIIGSPGTGKTSFILKAIEHLK---VPCGVIEGDVTS-DIDAKKMAEKK-IPVVQINTGGSCHLNAGSVNRALQSLAFDN-GIVFIENVGNLICPSGFELGEDFKLAMANVTEGDDKPYKYPLLFTKAKAVVLNKIDMLPYFEFNKKFFYDGVRAL-NPNAPIFEVSARTGEGFGELAKWLEEEYQKFRQNK--------
	'Thermoanaerobacter mathranii YP_003677319.1'               --------------------------------------------------------------------------MEEIIIIRDVLEANNNVASKNKAIKDERNILMVNIIGSPGTGKTSFILKAIEHLK---VPCGVIEGDVTS-DIDAKKMAEKK-IPVVQINTGGSCHLNAGSVNRALQSLAFDN-GIVFIENVGNLICPSGFELGEDFKLAMANVTEGDDKPYKYPLLFTKAKAVVLNKIDMLPYFEFNKKFFYDGVRAL-NLNAPIFEVSARTGEGFGELAKWLEEEYQKFRQNK--------
	'Thermoanaerobacterium saccharolyticum YP_006391305.1'      ---------------------------------------------------------------------------MEIKIIKDVLEANNNIAEENKNIKDERKIMMVNIIGSPGTGKTSFILKLIENMD---IPCGVIEGDVAS-DIDARKMAERN-IPVVQINTGGACHLNANSINKALSTLDFEG-GILFIENIGNLICPSDFELGEDFKLAMANVAEGDDKPYKYPLLFSKAKAVVINKIDLLPYFDFNKQYFYDGVKTL-NDEAEIFEVSARTGEGFEVLAKWLKKKYSEYVQGK--------
	'Thermoanaerobacterium xylanolyticum YP_004469848.1'        ---------------------------------------------------------------------------MEIKIIKDVLEANNNIAEENKSIKDGRKIMMVNIIGSPGTGKTSFILKLIENMD---IPCGVIEGDVAS-DIDARKMAERN-IPVVQINTGGACHLNANSINKALSTLDFEG-GILFIENIGNLICPSDFELGEDFKLAMANVAEGDDKPYKYPLLFSKAKAVVINKIDLLPYFDFNKQYFYDGVKTL-NDEAEIFEVSARTGEGFEVLAKWLKEKYDEYVQGK--------
	'Thermoanaerobacterium thermosaccharolyticum YP_003850797.1' ---------------------------------------------------------------------------MEIKIIKNVLEANNNIAEENKNIKDERKILMVNIIGSPGTGKTSFILKLIENMD---IPCGVIEGDVAS-DIDARKMAERN-IPVVQINTGGECHLNANSVNKALSSIDFHD-GILFIENIGNLICPSEFELGEDFKLAMANVAEGDDKPYKYPLLFSKAKAVVLNKIDLLPYFDFNKQYFYDGVKTL-NDKAEIFEVSSRTGEGFEVLAKWLKEIYNQYMQSK--------
	'Thermoanaerobacterium thermosaccharolyticum YP_007297555.1' ---------------------------------------------------------------------------MEIKIIKNVLEANNNIAEENKNIKDERKILMVNIIGSPGTGKTSFILKLIENMD---IPCGVIEGDVAS-DIDARKMAEMN-IPVVQINTGGECHLNANSVNKALSSIDFHD-GILFIENIGNLICPSEFELGEDFKLAMANVAEGDDKPYKYPLLFSKAKVVVLNKIDLLPYFDFNKQYFYDGVKTL-NDKAEIFEVSSRTGEGFEVLAKWLKEIYNQYMQSK--------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  307;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  13;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  307;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  307;
END;

BEGIN TREES;
	Title 'Trees from "hypB.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		n0 'Caldanaerobacter_subterraneus_subsp.pacificus_CDSM653_108',
[1] 		n1 'Caldanaerobacter subterraneus tengcongensis_NP_621830.1',
[2] 		n2 'Caldanaerobacter subterraneus yonseiensis_ERM91341.1',
[3] 		n3 'Thermoanaerobacter wiegelii YP_004818935.1',
[4] 		n4 'Thermoanaerobacter WP_004399984.1',
[5] 		n5 'Thermoanaerobacter ethanolicus WP_003868944.1',
[6] 		n6 'Thermoanaerobacter siderophilus WP_006569906.1',
[7] 		n7 'Thermoanaerobacter italicus YP_003477423.1',
[8] 		n8 'Thermoanaerobacter mathranii YP_003677319.1',
[9] 		n9 'Thermoanaerobacterium saccharolyticum YP_006391305.1',
[10] 		n10 'Thermoanaerobacterium xylanolyticum YP_004469848.1',
[11] 		n11 'Thermoanaerobacterium thermosaccharolyticum YP_003850797.1',
[12] 		n12 'Thermoanaerobacterium thermosaccharolyticum YP_007297555.1';
	TREE tree_1 = (((n12:0.008967,n11:0.000001)0.9460:0.036462,(n10:0.012322,n9:0.007514)0.9130:0.02985)0.9490:0.081589,((((n8:0.009274,n7:0.000001)0.9850:0.047586,((n6:0.000001,n3:0.000001)0.0000:0.000001,n4:0.004612)0.0000:0.000001)0.9480:0.040615,n5:0.047797)0.3090:0.037259,(n2:0.004487,(n1:0.000001,n0:0.000001)0.7640:0.004709)0.9290:0.035525)0.9650:0.111914)root;

END;


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		endTell;
end;