#NEXUS
[written Sun Aug 23 23:16:53 BRT 2015 by Mesquite  version 3.04 (build 725) at fernando-HP-Pavilion-15-Notebook-PC/127.0.1.1]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=9;
	TAXLABELS
		'Caldanaerobacter subterraneus pacificus_CDSM653_01577' 'Caldanaerobacter subterraneus tengcongensis_NP_623293.1' 'Caldanaerobacter subterraneus yonseiensis_ERM92226.1' 'Escherichia coli WP_000132963.1' 'Geobacillus sp. Y4.1MC1 YP_003989199.1' 'Geobacillus thermoglucosidasius YP_004587930.1' 'Moorella thermoacetica YP_431014.1' 'Thermacetogenium phaeum YP_006921304.1' 'Thermoanaerobacter sp. YS13 THYS13_RS04615' 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=160;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	'Caldanaerobacter subterraneus pacificus_CDSM653_01577'  ----VITVGNEMMGDDGAGPLLARLLEQNPIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGNLDFPHLDD-------
	'Caldanaerobacter subterraneus tengcongensis_NP_623293.1' MKRIVITVGNEMMGDDGAGPLLARLLEQNPIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGNLDFPHLDD-------
	'Caldanaerobacter subterraneus yonseiensis_ERM92226.1'   MKRIVITVGNEMMGDDGAGPLLARLLEQNPIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGNLDFPHLDD-------
	'Escherichia coli WP_000132963.1'                        MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVKEE----
	'Geobacillus sp. Y4.1MC1 YP_003989199.1'                 MKRLVITVGNEMMGDDGAGPLLARLLERNRIPGWEVIDGGSVPENYFHRVRDMKPEVAVVVDACDMNLKAGSVRLISENDIADEWILSTHRLPLSFFISALKELVPEVYFIGIQPSIVAFGVPVSPEIRQAVEMVYQKLK--AGKMDFPTLDD-------
	'Geobacillus thermoglucosidasius YP_004587930.1'         MKRLVITVGNEMMGDDGAGPLLARLLERNRIPGWEVIDGGSVPENYFHRVRDMKPEVAVVVDACDMNLKAGSVRLISENDIADEWILSTHRLPLSFFISALKELVPEVYFIGIQPSIVAFGVPVSPEIRQAVEMVYQKLK--AGKMDFPTLDD-------
	'Moorella thermoacetica YP_431014.1'                     MKGLVITVGNELMGDDGAGPLLARLLEQKRIPGWEVINGGPAPENYLHQVRDLKPGAVVVVDACEMNLQAGSIRLISEKDIACEFFLTTHRLPLSFFISALKELVPEVYFIGIQPAVVAFGLPVSPEVKQAVETVYQKLQ--AGKLDFQCLGQLGEKEDA
	'Thermacetogenium phaeum YP_006921304.1'                 MKKLVLTVGNELMGDDAAGPLLAKLLEKNPLSNWEVIDGGTTPENYLYRIREMRPDLVLVVDAADMNLPPGSIRLIPPEAIGEHLLMTTHNLPLTYLIRALREFVPQVYLLGIQPRDVLFGLPAFIGVKKAVATVYEKLK--QGDLNFDTL---------
	'Thermoanaerobacter sp. YS13 THYS13_RS04615'             VKRIVITVGNEMMGDDGAGPLLARLLKQNLIPGWQVIDGGSVPENYLHKIRYLKPDVVVVVDACEMNLKAGSIRLISESHIVCKFILSTHNLPLTFFISALREVVPEVYFIGIQPAAVGFGMPISSEVCRAVQIVYQKLQ--TGSLDFPHLDD-------

;


END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  160;

END;

BEGIN NOTES;

	TAXABITS   TAXA = Taxa NAME = newlyAddedTaxon on =  1 -  9;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  160;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  160;
END;

BEGIN TREES;
	Title 'Trees from "hycI.tre"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 'Caldanaerobacter subterraneus pacificus_CDSM653_01577',
[1] 		2 'Caldanaerobacter subterraneus tengcongensis_NP_623293.1',
[2] 		3 'Caldanaerobacter subterraneus yonseiensis_ERM92226.1',
[3] 		4 'Escherichia coli WP_000132963.1',
[4] 		5 'Geobacillus sp. Y4.1MC1 YP_003989199.1',
[5] 		6 'Geobacillus thermoglucosidasius YP_004587930.1',
[6] 		7 'Moorella thermoacetica YP_431014.1',
[7] 		8 'Thermacetogenium phaeum YP_006921304.1',
[8] 		9 'Thermoanaerobacter sp. YS13 THYS13_RS04615';
	TREE tree_1 = (((((2:0.000001,1:0.000001)0.0000:0.000001,3:0.000001)0.0000:0.000001,9:0.020877)0.9490:0.138122,(7:0.11913,(6:0.000001,5:0.000001)0.9830:0.127459)0.5600:0.075672)0.9510:0.274609,8:0.307734,4:0.610221)root;

END;


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end;