#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=22; TAXLABELS Sarcodon_atroviridis_EU293831 Sarcodon_atroviridis_JN135190 Sarcodon_atroviridis_KC571768 Sarcodon_atroviridis_KC571769 Sarcodon_atroviridis_KC571770 Sarcodon_bairdii_AV990_KR698938 Sarcodon_colombiensis_AV_2084_KP972654 Sarcodon_fuligineoviolaceus_EU293830 Sarcodon_fuscoindicus_EU834220 Sarcodon_glaucopus_JQ888205 Sarcodon_imbricatus_FJ845438 Sarcodon_leucopus_EU293828 Sarcodon_pakaraimensis_KC155390 Sarcodon_pakaraimensis_TH9554_KM668103 Sarcodon_pallidogriseus_KR698939 Sarcodon_portoricensis_KM668100 Sarcodon_quercophilus_KM668101 Sarcodon_rufogriseus_AV1989_KR698937 Sarcodon_scabripes_EU293829 Sarcodon_squamosus_AF103896 Sarcodon_umbilicatus_KM668102 Thelephoroid_Mycorrhizal_root_tip_AF351871 ; END; BEGIN CHARACTERS; TITLE Sarcodon_in_the_Neotropics_ITS1; DIMENSIONS NCHAR=892; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Sarcodon_atroviridis_EU293831 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTAGCCTCTTTAGGAA-------TTGTGCACACCTGG-ATCATCATGTA---ATAACCATTTAATACT----TTTATTACCCT-TGTGCACA----ACCTGTAGCTTGACCATTTTAACAAA-------------------------ATTGGTTTGAGTTATGAATGC----TTT----TCAATTTACAC--------------ATTTTGAAGTTTGGGG-----TCATTATATTAGA--------ATAATATA----TAATAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGCCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGATT---TTATCAAAGTGAAGTTGGACTA-TGGAGGGT---TTTAATGCAGACAAAG----------------------------CTTTTGCCTGCTCCTCCAAAATATAT------------------TATC-TTGAGG---------CAAATTCTC-------ATCATCA--ATGTGATAAATTTACAAC---ATTG---TTTGATAGTCTATACA--------------TACCCAAGTTTCATAGAAATATAA---------------------------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_atroviridis_JN135190 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTAGCCTCTTTAGGAA-------TTGTGCACACCTGG-ATCATCATGTA---ATAACCATTTAATACT----TTTATTACCCT-TGTGCACA----ACCTGTAGCTTGACCATTTTAACAAA-------------------------ATTGGTTTGAGTTATGAATGC----TTT----TCAATTTACAC--------------ATTTTGAAGTTTGGGG-----TCATTATATTAGA--------ATAATATA----TAATAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGCCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGATT---TTATCAAAGTGAAGTTGGACTA-TGGAGGGT---TTTAATGCAGACAAAG----------------------------CTTTTGCCTGCTCCTCCAAAATATAT------------------TATC-TTGAGG---------CAAATTCTC-------ATCATCA--ATGTGATAAATTTACAAC---ATTG---TTTGATAGTCTATACA--------------TACCCAAGTTTCATAGAAATATAA---------------------------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_atroviridis_KC571768 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTAGCCTCTTTAGGAA-------TTGTGCACACCTGG-ATCATCATGTA---ATAACCATTTAATACT----TTTATTACCCT-TGTGCACA----ACCTGTAGCTTGACCATTTTAACAAA-------------------------ATTGGTTTGAGTTATGAATGC----TTT----TCAATTTACAC--------------ATTTTGAAGTTTGGGG-----TCATTATATTAGA--------ATAATATA----TAATAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCCGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGCCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGATT---TTATCAAAGTGAAGTTGGACTA-TGGAGGGT---TTTAATGCAGACAAAG----------------------------CTTTTGCCTGCTCCTCCAAAATATAT------------------TATC-TTGAGG---------CAAATTCTC-------ATCATCA--ATGTGATAAATTTACAAC---ATTG---TTTGATAGTCTATACA--------------TACCCAAGTTTCATAGAAATATAA---------------------------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_atroviridis_KC571769 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTAGCCTCTTTAGGAA-------TTGTGCACACCTGG-ATCATCATGTA---ATAACCATTTAATACT----TTTATTACCCT-TGTGCACA----ACCTGTAGCTTGACCATTTTAACAAA-------------------------ATTGGTTTGAGTTATGAATGC----TTT----TCAATTTACAC--------------ATTTTGAAGTTTGGGG-----TCATTATATTAGA--------ATAATATA----TAATAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGCCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGATT---TTATCAAAGTGAAGTTGGACTA-TGGAGGGT---TTTAATGCAGACAAAG----------------------------CTTTTGCCTGCTCCTCCAAAATATAT------------------TATC-TTGAGG---------CAAATTCTC-------ATCATCA--ATGTGATAAATTTACAAC---ATTG---TTTGATAGTCTATACA--------------TACCCAAGTTTCATAGAAATATAA---------------------------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_atroviridis_KC571770 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTAGCCTCTTTAGGAA-------TTGTGCACACCTGG-ATCATCATGTA---ATAACCATTTAATACT----TTTATTACCCT-TGTGCACA----ACCTGTAGCTTGACCATTTTAACAAA-------------------------ATTGGTTTGAGTTATGAATGC----TTT----TCAATTTACAC--------------ATTTTGAAGTTTGGGG-----TCATTATATTAGA--------ATAATATA----TAATAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGCCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGATT---TTATCAAAGTGAAGTTGGACTA-TGGAGGGT---TTTAATGCAGACAAAG----------------------------CTTTTGCCTGCTCCTCCAAAATATAT------------------TATC-TTGAGG---------CAAATTCTC-------ATCATCA--ATGTGATAAATTTACAAC---ATTG---TTTGATAGTCTATACA--------------TACCCAAGTTTCATAGAAATATAA---------------------------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_bairdii_AV990_KR698938 -----------------------------------------------AGAGCAATATTATAT-----------------------------------------------ATGTGCACACCTGA-ATCATTATGTAA---AAACCATTTAATATT----TTTATTATCCT-TGTGCACAACTTGTTTGTAGCTTAAC--TTAT--------------------------------------TAAGCTATGAATGC----CTT----TTATTATACAC---------------TACTAGAATATTAGGGA---TAATTAAGTATCA----------AATAAA-----AATAACTTTCAGCAACGGATCTCTTGGCTCTTGCATCGATGAAGAACACAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAATGCATCTTGCACTCCTTGGTACTCTGAGGAGTATGCCTGTTTGAGTGTTATA-ATATTATCAACTACTTTGATT---TTATCAAAATGAAGTTGGATTA-TGAAGGCA-TTTTAAATGCAGACCAGT------------------------------TATGTTTGCTCCTTTAAAATATATTCAAGGATGCACT-----TATC-TTGGGGT-----A------------------TTCATCAATATATGATAAACTTACTACTATATTG---TTGATA---------------------------CCAAGTTTGTGTCCAAAATATATGTTTATATAACAA------------------------------------GTTTTAACCTCAAATCAGGTAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-- Sarcodon_colombiensis_AV_2084_KP972654 AAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTGGCCCTCTGGGGCAAATAT--ATGTGCACACCTAG-ATCATCATGTAT--ATAACCATTTAATAATT---TTTATTACCCT-TGTGCACA---TCCTTGTAGCTTAGCTATTCTACCATATAG----------------------------TTAAGTTATGAATGC----CTT----TTATTATACAC-----------------TTGGAATTTTTGGGCATTATTGAATGTTATA---------ATATATA----ATATAACTTTCAGCAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGTCTGTTTGAGTGTCATATAATTTATCAACTACTTTGTTT---TTATCAAAGTGAAGTTGGACTA-TGAAGGAT--------TGCAGTCAAAG----------------------------TTTTTGACTGCTCCTTTAAAATGTATGAGGTAAA----------TATCTTTAGGGGTATTTA--AGAAAT----------ATCATCA--ATGAGATAAG-TTAAAAC---ATTG---TTGATATGGTATTACA----------------CCCTAAGGTTTTATCAGAATCTATAAAGTTAT-----------------------------------------AATTTGACCTCAAATCAGATAGGATTACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAA Sarcodon_fuligineoviolaceus_EU293830 ------------------------------------------------ATGAAATC-CACGTCTGGTTA--------AGGTTGCTGCTGGCCCCTCCTCGGGGC-----ATGTGCACGCCTTG-ACCGG---------------GTTTATGTCCC---TCCTTCACACC-TGTGCACC----AACTGTAGCTGGGG-ATGATCACGGAGCCTGTCGGTT-----------CCGAATGCCCT-CGCTATGAACGT----TTT--------TACACAC--CTATAATAAAGTCTTTTAGAATGTTTTG-----CCAGCGTGTAACG-----ACGCGAACGAA----ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAATTATCAACTGCTTCGGCTTTGTT-TCGAAGTGAAGTTGGATT--TGGAGTGC-------TTGCTGGCGT------------------------------CGTTTG---GCTCCTCCCAAAAGCAT---AAACCCCCTTC----CCTC-TTGGTGG--------AAAAGT----------ATCCTTG--ATGTGATAAT-CCTTTAC---GTCG---CGGAGAAAGCCTTGAAGTGGG--------------AGTGGCTTGGTGGGGGAGGTTATCGTTGATGACCCCCTTCATTTTTTCTTCTTGAC--------------AATTCGACCTCAAATC----------------------------------------------- Sarcodon_fuscoindicus_EU834220 ------------------------------------------------ATGAAATC-TATACGTCTGAGAG------AGGTTGTTGCTGGTCCCCTCCTGGGGTGC---ATGTGCACGCTTTG-ATCG-------------GATGTTTATGTCC----TCCTTTACACC-TGTGCACC----AACTGTAGCTGGGG-ATGATCACGGAGCTGTCGGTT------------CCGAATGCCCT-CGCTATGAATGT----TTT----------TACACCCTATAATAAAGTTTTTTTGGAATGTTTCA-----TCTGCGTGTAACA-----GCGCGAATTAA----ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAATTATCAACTGCTTTGGCTTTTGTTTCAAAGTGAAGTTGGATT--TGGAGTGT-------TTGCCGGCGTGT----------------------------------TCGGCTCCTCTCAAAAGCAT---CGAACCT--------TCTC-TTGGGGC-----A--GAAAGT----------ATCTTTG--ATGTGATAAT-CATCTAC---GTCG---CAGAGAAAGCTCCGAG-----------------TGGAAGTGTGCTTGTGTGGAAGGGAAAGTTGTTATGACCTCCCTCTTCCCTCATTTGACA------------AGTTCGACCTCAAATC----------------------------------------------- Sarcodon_glaucopus_JQ888205 ------------------------------------------------ATGAAACACCGAACGTTTGGGAATCGTCTGGGTTGTTGCTGGCCTCTTCGTTGAGGT----ATGTGCACGCCTTG-ACCCCTG----------GCGTTTCAGTCCT----TTCTTCACACCTTGTGCACC----AACTGTAGCTGGGG-ATGATCACGAAGCCTTTTGGTT-----------TCGAATGCCTC-GGCTATGAA-GT----TTT-------ACGAACGC---TTTGTTAAAGTCTATTAGAACGTTTGTA----ACCGCGTCTGA--------CGCGAATTGA----ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAATTCTCAACTGCCCTCTTTTCTTAAAGAGGGTGAAGTTGGATT--TGGAGCGC------TTTGCTGGCCT-----------------------------TTTGTTACCGGCTGCTCCTAAAAGCATTCCAAGCCTTTTGT----TATC-TCGGCGC---------AAAGT----------ATCTTTG--ACGTGATAAT-TATCTAC---GTCG---CAGAGAAAGCCTAGAG-------------------GGGGCTTGTTAAAGCATTT------------------------------------------CTTTGACC-CTTTCGACCTCAAATC----------------------------------------------- Sarcodon_imbricatus_FJ845438 ------------------------------------------------ATGAAACATGAACCTC-------GTGAA-GGGTTGTTGCTGGCCTCTAGAGGT--------ATGTGCACGCCTGG-ATC-----------------GTTCATCCTCCC--TTTCTTACACC-TGTGCACA----ACCTGTAGCTTGGG-ATGATCACGGAGTGTGCTGCTTTTGTAGTCACTTTGAATGCCCT-CTCTATGAAC?C----TTT------TATATACAC---CTTTATAAAGTCTTGTAGAATGTTGA------TAAGCGTGTAACA-----GCGCGAAAATA----ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAGTTCTCAACTGCTTTGACTTTATTGTTGAAGTGAAGTTGGATT--TGGAGGAT-----CTTTGCTGGCGCGAGCTTGTGTGCAGAGATTGTATGCTTGCTTGCTTGTCGGCTCCTCTTAAAAGTAT---GAAACCTTTCCAGTAGATC-TTGGCGAA-------AAGAGT----------ATCTTCG--ACGTGATAAC-TATCTGC---GTCG---TTGAGAAAGCTTAAGAGCAGGGCC------CTTCAAAGGCTCCTACAGGGAAAG------GTTAATGCATATGTCTTCTTCCCAGTGAGACTGCTGCCTTGACC-AATTCGACCTCAAATC----------------------------------------------- Sarcodon_leucopus_EU293828 ------------------------------------------------ATGAAACA-AACCTTC-------GTGAA-GGGTTGTTGCTGGCCTCTCTTGGAGGGC----ATGTGCACACCCGG-ATC-----------------GTTTATCCTCA---TTTCCTACACC-TGTGCACA----ACCTGTAGCTTGGG-ATGATTACGAGGGACACC---------------TCGAATGCCCT-TGCTATGAATGT----TTT-----TATTACACAC---CCTTATAAAGTCTTGTAGAATGTTGA------TCAGCGTGTAACA-----GCGCGAATAAA-----TACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCCAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAAT?CTCAACTGCTCTAGCTTTTTTGTTAGAGCGAAGTTGGACT--TGGAGGAT-----CATTGCTGGCGTGA-------------GCATGCATGCATGCTTACTTGTTGGCTCCTCTTAAATGTAT---GAAACCTTTCCGGTAGATC-TTGGCA------A--AAGAGT----------ATCTTCG--ACGTGATAAC-TATCTGC---GTCG---TTGAGAAAAGCTTAGAGCAGAGCCC-----TTCACAAGGCTCCTACACACAAATGTTCATGT---------------CTTTCTTATCAAAGGGAGATCTTGACC-AATTCGACCTCAAATC----------------------------------------------- Sarcodon_pakaraimensis_KC155390 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTGGCCCTCTGGGGCAATAT---ATGTGCACACCTAG-ATCATCATGTGTATATAACCATTTAATAATT---TTTATCACCCT-TGTGCACA---TCCTTGTAGCTTAGC-ATTATAGC-----------------------------------TAAGTTATGAATGC----CTT----TTATTATACAC-----------------TTGGAATTTTTGGGCATTATTGAATGTGATA-----------ATATA----ATATAACTTTCAGCAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGTCTGTTTGAGTGTCATATAATTCATCAACTACTTTGTTT---TTATCAAAGTGAAGTTGGACTA-TGAAGGAT--------TGCAGTCAAAG----------------------------TTTTTGAATGCTCCTTTAAAATATATGAGGTAAA----------TATCTTTAGGGTATTTAAGAAAT-------------ATCATCA--ATGAGATAAG-TTAAAAC---ATTG---TTGATATAGCATTACT------------TACACCCTAAGGTTTTATCAGAATCTATTTTATATAAGTTATTAT--------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_pakaraimensis_TH9554_KM668103 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCTGGCCCTCTGGGGCAATAT---ATGTGCACACCTAG-ATCATCAT?TGTATATAACCATTTAATAATT---TTTATCACCCT-TGTGCACA---TCCTTGTAGCTTAGC-ATTATAGC-----------------------------------TAAGTTATGAATGC----CTT----TTATTATACAC-----------------TTGGAATTTTTGGGCATTATTAAATGTGATA-----------ATATA----ATATAACTTTCAGCAATGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGTCTGTTTGAGTGTCATATAATTCATCAACTACTTTGTTT---TTATCAAAGTGAAGTTGGACTA-TGAAGGAT--------TGCAGTCAAAG----------------------------TTTTTGAATGCTCCTTTAAAATATATGAGGTAAA----------TATCTTTAGGGTATTTA---AGAAAT----------ATCATCA--ATGAGATAAG-TTAAAAC---ATTG---TTGATATAGCATTACT------------TACACCCTAAGGTTTTATCAGAATCTATTTTATATAAGTTATTAT--------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_pallidogriseus_KR698939 ----------------------------------------------------------------------------------GTAGCTGGTCCTCTAGGGC--------ATATGCACACCTGG-ATCATT---TATGTAATATCATTAAATAATTT--TTTATTACCCT-TGTGCAT-----ACCTGTAGCTTGAGCCTTGATATA------------------------CTTATTGGTTTAAGCTATGAAT------TTT--AATAGCTACACAC---------------TTGAAAAATGTTGGGAT---TTATTATTGAATA-----A--------------ATATAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGCATGTCTGTTTGAGTGTCATAATTATTATCAACTGCTTTGGTT---TTATCAAAGTGAAGTTGGATGAGTGAAGGAG--------TGCAGGCAAAA-----------------------CTTTTTATATGTTTGCTCTTTCAAAATATATTTAAGGACTG--------TATC-TTGGATGAAGCTATTAATGCTTAGTGAAAAGATCATCA--ATATGATAAA-TTACTAT---ATTG---TTGATAAACATATACA-----------------TCCAAGCTTCTGTCTATATAAGCATATATAA-----------------------------------------TATTTGACCTCAAATCAGATAAGACTACCCGCTGAACTTAAGCATATCAATA----------- Sarcodon_portoricensis_KM668100 ------------------------------------------------ATGGAAAA-TATTTACATTGTATGTGAA-GGGTTGTAGCCA-------TAGGAA-------TTGTGCACACCTGG-ATCATCATGTA---ATAACCATTTAATACT----TTTATTACCCT-TGTGCACA----ACCTGTAGCTTGACCAT------------------------------------TAGGTTGAGTTATGAATGT----TTT-----CAATTTACAC--------------ATTTTGAAGTTTGGGG-----TCATTAGGAA------------TAATATA----TAATAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGATT---TTATCAAAGTGAAGTTGGACTA-TGGAGGTT----TTAATGCAGACAAAG-----------------------------TTTTGCCTGCTCCTTTGAAATACAT------------------TATC-TTGGGG---------CAAATTCTC-------ATCATCA--ATGTGATAAATTTACAAC---ATTG---TTGATAGTCTATAATA-----------------CCCAAGTTTTCATAGAGATATATA------------------------------------------------AAATTGACCTCAAATC----------------------------------------------- Sarcodon_quercophilus_KM668101 ------------------------------------------------AGGGAAAA-CATTTACATTGTATGTGAA-GGGTTGTAGCCAGCCTCTTATAGGAA------TTGTGCACACCTGA-ATCATCATGTA---ATAACCATTTAATACT----TTTATTACCCT-TGTGCACA----ACCTGTAGCTTGACCATTTTAACAA--------------------------AATTGGTTGAGTTATGAATGC----TTT----TCAATTTACAC--------------ATTTTGAAATTTGGGG-----TCATTATATTGGA--------ATAATATA----TAATAACTTTCAGCAATGGATCTCTTGGCTCTTGCATCGATGAAGAACGCAGCAAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGCCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGATT---TTATCAAAGTGAAGTTGGACTA-TGAAGGTT---TTTAATGCAGACAAAA------------------------AAAGCTTTTGCCTGCTCCTTTGAAATATAT------------------TATC-TTGGGG---------CAAATTCTC-------ATCATCA--ATGTGATAAATTTACAAC---ATTG---TTGA-TAGTTGATAAA---------------TACCCAAGTTTTCATAGAGATATATAATAA--------------------------------------------AATTTGACCTCAAATC----------------------------------------------- Sarcodon_rufogriseus_AV1989_KR698937 ---------------------------------------------------------------------------------------TGGCCCTCTGGGTA--------ATGTGCTCGCCTAG-ATCATCATGTAT--ATAACCATTTAATATTTCTATCTATCACCCT-TGTGCACAATGTACTTATAGCTTTA--ACTATAG-----------------------------------TTAAGTTATAAATGCCTTTTTTAATCATATCACACAA-----------------TGGGAATTTTGG------GTACCATTTTAAATATGGATGGTAATATATAATATATAACTTTCAGCAATGGATCTCTTGGCTCTCGCATCGATGAAGAACACAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCACTCCTTGGTATTCTGAGGAGTATGCCTGTTTGAGTGTCATATAACTTATCAACTACTTTG------TTACCAAAGTGAAGTTGGATTA-TGAAGGACCTTTGAAATGCAGTCAG------------------------------TTGCTGACTGCTCCTTCAAAATGTAT---------ATCAGGTAATATC-TTGGGGTATTTAAAAAG--------------ATCATCA--ATGAGATAAG---TCAAC---ATTG---TTGATGTTTTTTATTA------------TGCACTCTAAGATTCTATCAGAATTTATTTTATAAACTTTTTATACAAGTTTATAAAGCAAGTTTTTAT--------AATTTGACCTCAAATCAGGTAGGATTACCCGCTGAACTTAAGCATATCAATAA---------- Sarcodon_scabripes_EU293829 ------------------------------------------------ATGAAACA-AAAGCTC-------GTGAA-GGGTTGTTGCTGGCCCTCTTTTGGGGGGT---ATGTGCACACCTGG-ATC-----------------GTTCATCCTCCT--TTTCTTACACC-TGTGCACA----ACCTGTAGCTTGGG-ATGATCACGGAGTGGCCTTGCT-----------TCGAATGCCCT-TGCTATGAACAC----TTTGTGTTTATAACACAC---TCTTGTAAAGTTCTCTAGCATGTCAA------ATAGCGTGTAACA-----ACGCGAATATA----ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAATTCTCAACTGCTTCAGCT---TTGTTGAAGTGAAGTTGGACT--TGGAGGAT-----CTTTGCTGGCGTAA------GTGTACACAATATTGTAACATTTGCTTGTTGGCTCCTCTTAAAGACAT---GAAGCTTTTCTAGTAGATCTTTGGCA------G--AAAAGT----------ACCATTG--ATGTGATAAT-TATCTGC---ATCG---TTGAGAAAGCCATAGAGCAGAGTCCTACTTTA-TAAGGGCTCCTACAGAAAA------TGTTTATGATGTTCGTTGCCTTTCAACGATGATCACAA--TTGACCAAATTCGACCTCAAATC----------------------------------------------- Sarcodon_squamosus_AF103896 ------------------------------------------------ATGAAATGTGAACATC-------GTGAAAGGGTTGTTGCTGGCCTCTCTGTATAGAGAGGTATGTGCACGCCTTGGATC-----------------GTTCATCCTCCC--TTTCTTACACC-TGTGCACA----ACCTGTAGCTTGGG-ATGATCACGGGGTGTGCTGCTTTTGTGGCCGCCTTGAATGCCCT-CGCTATGAACGC----TTT-----TTATATACAC---CTTTATAAAGTCTTGTAGAATGTTGA------TAAGCGTGTAACA-----GCGCAAAAATA----ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAGTTCTCAACTGCTTTGACTTTATTGTTGAAGTGAAGTTGGATT--TGGAGGAT-----CTTTGCTGGCGTGAGCTTGAGTGT--ACATTGTATGCATGCTTGCTTGTCGGCTCCTCTCAAAAGTAT---GAAACCTTTCCAGTAGATC-TTGGCG------A-AAAGAGT----------ATCTTCG--ACGTGATAAC-TATCTGC---GTCG---TTGAGAAAGCTTAAGAGCAGGGCCC-----TT-CAAAGGCTCCTACAGGGAAAA----GGTTCACGCAATATGTCTTCTTCCCAGGGAGACTGCTGCCTTGACC-AATTCGACCTCAAATC----------------------------------------------- Sarcodon_umbilicatus_KM668102 ------------------------------------------------ATGGAGAA-TAT-----TTGTATGTGAA-GGGTTGTAGCTGGCCTTCTAGG----------CAGTGCACACCTGG-ATCATCATGT-------ATTATTTA---------TTATCTACCCCTTGTGCACA----ACCTGTAGCTTTAA-ACACTAGTG---------------------------------TTAAGCTATGAATAC----CTT----TAATTATACAT-----------------TTGAAATTTTTGGGGTT-AAAAAGTGGAATA-----T--------------ATATAACTTTCAGCAATGGATCTCTTGGCTCTCGCATCGATGAAGAACACAGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCACTCCTTGGTATTCTGAGGAGTATGTCTGTTTGAGTGTCATA-AATTTATCAACTACTTTGTTT---TTGTCAAAGTGAAGTTGGATTA-TGAAGGAT-TTT-AAATGCAGGCTAAA------------------------ATGCTTTTTATCTGCTCCTTCAAAATATAT---AAAGGGCATATAAT---CCTTTGAAGG------------------------ATCATCA--ATGAGATAAGTTTATAAC---ATTG---TTGA--------------------------TTTTCAAGGTTTTGTCTAAAATTTTATATACTTTGAT--------------------------------------AATTTGACCTCAAATC----------------------------------------------- Thelephoroid_Mycorrhizal_root_tip_AF351871 ----------------------------------------AACTGCGGAAGGACATTAAAGAATATTGGATGCCAAGGGGTTGTTGCTGGTCTTTGAC-----------ATGTGCACATCTTG-A-------------------AGTCATCCTTTTCTTACCACACACC-TGTGCACC----ATCTGTAGCGTAGGGATGAT--CGACGCAAGTCGATCGATCGATCAGATCGAATGCCCTATGTTACG---------TTT-------ATACACACACACTATGT------CTTTAGAATGTAATGTAAT-ATTGCGTGTTATA-----TCGCAGATGAA----ATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATG-AAATTCTCAACTGCTTTGTTT---TTAACAAAGTGAAGTTGGATT--TGGAGGTG------TTTGCTGGCATA---------------------------------TGTCAGCTCCTCTCAAATGCAT---TAAAGCTTTGTTGT-TATC--------------------------------ATTCTTTGGACGTGATAAT-TATCTAC---GTCGGATTGGAATGGTGGTTACGGCTTATCTGTTCATTTTTTGAACCTTGGAC-----------------------------------------------------------CATCTGACCTCAAATCARGGCAGGACTACCCCGCTG--------------------------- ; END; BEGIN TREES; Title Sarcodon_in_the_Neotropics_ITS1; LINK Taxa = Taxa; TRANSLATE [0] 1 Sarcodon_atroviridis_EU293831, [1] 2 Sarcodon_atroviridis_JN135190, [2] 3 Sarcodon_atroviridis_KC571768, [3] 4 Sarcodon_atroviridis_KC571769, [4] 5 Sarcodon_atroviridis_KC571770, [5] 6 Sarcodon_bairdii_AV990_KR698938, [6] 7 Sarcodon_colombiensis_AV_2084_KP972654, [7] 8 Sarcodon_fuligineoviolaceus_EU293830, [8] 9 Sarcodon_fuscoindicus_EU834220, [9] 10 Sarcodon_glaucopus_JQ888205, [10] 11 Sarcodon_imbricatus_FJ845438, [11] 12 Sarcodon_leucopus_EU293828, [12] 13 Sarcodon_pakaraimensis_KC155390, [13] 14 Sarcodon_pakaraimensis_TH9554_KM668103, [14] 15 Sarcodon_pallidogriseus_KR698939, [15] 16 Sarcodon_portoricensis_KM668100, [16] 17 Sarcodon_quercophilus_KM668101, [17] 18 Sarcodon_rufogriseus_AV1989_KR698937, [18] 19 Sarcodon_scabripes_EU293829, [19] 20 Sarcodon_squamosus_AF103896, [20] 21 Sarcodon_umbilicatus_KM668102, [21] 22 Thelephoroid_Mycorrhizal_root_tip_AF351871; TREE PAUP_1 = ((12:0.125799,19:0.167031,(11:0.024975,20:0.03011):0.067603,(22:0.421588,(10:0.300248,(8:0.128488,9:0.195979):0.079937):0.065253):0.129837):0.322143,(15:0.240998,(6:0.220319,((21:0.25687,(18:0.180867,(7:0.034103,(13:0.004715,14:0.001747):0.031806):0.046551):0.053008):0.05854,((16:0.047512,17:0.039737):0.031575,(1:0.00000001,2:0.00000001,3:0.002485,4:0.00000001,5:0.00000001):0.050354):0.123098):0.086644):0.049623):0.322143)[% ] [% ] [% setBetweenBits = selected ]; END;