NEXUS
[File created by TreeBASE:  7/26/07  21:18:12]
[Matrix accession#: M3270]

BEGIN TAXA;
	TITLE M3270;
	DIMENSIONS  NTAX=21;
	TAXLABELS
		Pyrenopeziza_brassicae_AJ006073	Emericella_nidulans_AY339600	Septoria_passerinii_AF483193	Mycosphaerella_graminicola_AF440399	Dothistroma_septosporum_DQ915450	Dothistroma_pini_DQ915449	'Cercospora zeae-maydis DQ264747'	Cercospora_zeina_DQ264748	Cercospora_beticola_DQ192582	Stemphylium_sp._AY339860	Phaeosphaeria_nodorum_AY212018	Leptosphaeria_maculans_AY174048	Cochliobolus_kusanoi_AF129742	Pleospora_gracilariae_AY335173	Cochliobolus_heterostrophus_AF029913	Alternaria_alternata_AB009451	Cryphonectria_parasitica_AF380365	Fusarium_oxysporum_AB011379	Gibberella_zeae_AF318048	Gibberella_circinata_AY219876	Magnaporthe_grisea_AB080672
	;
END;

BEGIN CHARACTERS;
	TITLE M3270;
	DIMENSIONS NCHAR=174;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Pyrenopeziza_brassicae_AJ006073            CTTCCGAAGAAATCACTGAATTCTTGGATGGCTTTCAGATCCTTCTATCAAAATCT------CTTTCCCCATTTGCAGCAGAAGGAAGCCTCGATCTATCTTACCGCCTTGTGGAAGCGCGACCCGTTCAAGGCCAAGTGGACAATCATTGCTGCTGCATACTCCAAGATTCGT
		Emericella_nidulans_AY339600               GGGAAACGAAGGCCTCTCAATAGTTTCATCGCATTCAGAAGTTTCTACTCTGCCAT------CTTCCCAGACATCACTCAAAAATCAAAGTCCGGTATTCTTCGCTTCCTTTGGCAGAACGACCCTTTCAAAGCCAAGTGGACCATACTCGCGAAGGCCTATTCCATCATTCGT
		Septoria_passerinii_AF483193               CCGCCGAAGCGTCCGCTCAACGCGTGGATGGGATTTCGCAACTTCTACCTCAAGGT------TCTGGAGGGCCTCGCGCAGAAGGACATCTCCAAGACGATGACTGTTTTCTGGGCCAACGATCCGTTCAAGTCAAAGTGGGCTCTGTTGTCCAAGGCTTACAGTGTCGCCCGC
		Mycosphaerella_graminicola_AF440399        CCACCGAAGCGTCCGCTCAACTCGTGGATGGCATTTCGCAACTTCTACATTCCTCT------TATGCTGGGCGTTCCGCAGAAGTGTGTCTCCAAGACGATGACTATGTTGTGGTCCAACGATCTTTTCAAGGCAAAGTGGGCTCTCCTGTCCAAGGCCTACAGTGTCGCTCGC
		Dothistroma_septosporum_DQ915450           GGTCCAAAGAGACCGCTCAACTCCTGGATGGCATTCCGCAAGTTCTACAATGCAAT------GCTCAGGGGACACACTCAGAAAGCGATCTCCAAGGCCTTAACGATCCTGTGGCGTGCAGATCCCTTCGAGGCCAAGTGGTAAGCTCTCGCCAAGGCATACAGTGTCTTGCGT
		Dothistroma_pini_DQ915449                  GGGCCAAAGAGACCGCTCAACTCCTGGATGGCATTCCGAAAGTTCTACAATGCAAT------GCTCGGAGGGCACACTCAGAAAGCGATCTCCAAGGCCTTGACGATCCTGTGGCGTGCAGATCCCTTCGAGGCCAAGTGGTAAGCTCTCGCCAAGGCATACAGTGTCTTGCGT
		'Cercospora zeae-maydis DQ264747'          GGGCCAAAGCGACCGCTCAACTCCTGGATGGCATTTCGCAAACACTACAACAGAGT------GCTCGCACCACACACTCAGAAAGCGATCTCAGGCTGCCTGGCTCAGTTGTGGAAAGCAGATCTCTTCACGGCAAAGTGGGCTCTTCTTGCCAAGGCATACAGCGTTGTGCGC
		Cercospora_zeina_DQ264748                  GGACCAAAGCGACCGCTCAACTCCTGGATGGCATTTCGCAAACACTACAACAGAGT------GCTCGCACCATACACTCAGAAAGCGATCTCAGGCTGCCTGGCTCAGTTGTGGAAGGCAGATCTCTTCACGGCAAAGTGGGCTCTTCTTGCCAAGGCATACAGCGTTGTGCGC
		Cercospora_beticola_DQ192582               GGGCCAAAGCGACCGCTCAACTCCTGGATGGCATATCGCAAATACTACAACAGAGT------GCTCGCACCACACACTCAGAAAGCGATCTCAGGCTGCCTGGCTCAGTTGTGGAAAGCAGATCTTTTCACGGCAAAGTGGGCTCTTCTTGCCAAGGCATACAGCGTTGTGCGC
		Stemphylium_sp._AY339860                   AAGGCTAGAAAAGCTCTCAATGCCTTCGTCGGATTCCGCTGCTATTACATCACGATCCCCATGTTCAAACAATGGCCCATGAAGAAGCTCTCCAACCTCATTGGACTTTTATGGGAAGCTGATCCAAACAAGTCACTTTGGTCATTGATGACGAAGGCTTGGTCTACTATTCGT
		Phaeosphaeria_nodorum_AY212018             AAGCTCAAGAAGGCGCTGAACGGATTCATAGGCTATCGTTCCTGGCTCAAAGCTATACCCTTCTTCAACATGTGGCCGATGAAGAATATTTCGTCCTATATCGGTCAGCTGTGGGAGCATGAACCCGACAAGCCTCTGTGGACCCTGATGACAAAGGCCTGGTCCGCCATCCGC
		Leptosphaeria_maculans_AY174048            AAGAACAAGAAAGCTCTCAACGCGTTTGTGGGTTTTCGTTGTTACTACATTGCGATCCCCATGTTCAAGTCGATCCCCATGAAGTTGCTCTCGCAGCCCATTGGTATGATTTGGGAGGTAGACCCTAACAAGTCGCTTTGGTCTTTAATGGCCAAGGCCTGGTCCTTGATCCGC
		Cochliobolus_kusanoi_AF129742              AGAGCGAGAAAAGCACTCAACGCCTTTGTCAGATTCCGCTGTTACTACGTCGCGATCCCGATGTTCAAGCAATGGCCCATGAAGAAGCTTTCCAATCTCATTGGCCTTTTATGGGAGGCAGATCCAAACAAGTCACTTTGGTCCTTGATGACGAAAGCCTGGTCCACCATCCGT
		Pleospora_gracilariae_AY335173             AAAGCTAGAAAAGCTCTCAATGCTTTCGTCGGATTCCGCTGCTATTACATTACGATCCCCATGTTCAAGCAATGGCCCATGAAGAAGCTCTCCAACCTCATTGGGCTGCTGTGGGAGGCAGATCCAAACAAATCACTTTGGTCTCTGATGACGAAGGCCTGGTCGACTATTCGT
		Cochliobolus_heterostrophus_AF029913       AAAGCGAGAAAGGCTCTTAATGCGTTCGTTGGATTCCGCTGCTACTATGTTACGATTCCGATGTTTAAGTCATGGCCTATGAAGAAGCTTTCCAACCTGATTGGACTCCTATGGGAAGCAGATCCAAACAAATCACTTTGGTCTTTGATGGCGAAAGCCTGGTCTACTATCCGT
		Alternaria_alternata_AB009451              AAAGCTAAGAAAGCTCTTAATGCCTTTGTTGGATTTCGGTGTTACTACATCTCAATCCCTCATTTCAAGTCATGGCCCATGAAGAAGCTCTCCAACCTCATCGGACTCCTATGGGAGACCGATCCAAACAAGTCACTATGGTCGTTGATGACGAAAGCCTGGTCCGCCATTCGC
		Cryphonectria_parasitica_AF380365          AAGGCTAGAAAGCCGGTCAATTCCTTCGTCCTTTACCGATCTATGATGCTTGATCT------CTATCCTCAGTTTACCCAGGCTCACCGGTCTCGCTTGATTCGACAGATGTGGAATCTTGAGCAGCACAAGACCAGCTACTCAGTCATGGCCCGAGTTTGGACTTTCATTCGC
		Fusarium_oxysporum_AB011379                AGGGCTAAGCGCCCTCTTAACGCCTTCATGGCCTTTCGCACCTACTATTTGAAGCT------GTTCCCCGATACCCAGCAGAAGAATGCCTCCGGTTTCCTGACCCAGCTCTGGGGCGGCGACCCTCACCGAAACAAATGGGCCCTGATTGCTAAAGTCTATTCCTTTCTTCGC
		Gibberella_zeae_AF318048                   CGTGCTAAGCGCCCTCTGAATGGCTTCATGGCCTTTCGAACCTACTACTTGAAGCT------GTTCCCCGATACTCAGCAGAAGGACGCTTCTGGTTTTTTGACTCAGCTCTGGGCTACAGACCCCAATCGAAACAAATGGGCCCTAATTGCTAAGGTTTACTCCTTCACCCGA
		Gibberella_circinata_AY219876              AGGGTTAAGCGCCCTCTTAACGCCTTCATGGCCTTTCGCACCTACTATCTGAAGTT------ATTCCCCGACACCCAGCAGAAGAATGCTTCCGGTTTCCTGACTCAGCTCTGGGGCGGCGACCCTCACCGAAACAAATGGGCCCTGATTGCTAAAGTCTATTCCTTCCTCCGC
		Magnaporthe_grisea_AB080672                AAAAACAAGAAGAAAGTCAATGGATTTATGGCATTTCGATCCTACTACGCTGGCAT------CTTTCAGGATAGACCGCAGAAAGAACGTTCGCCCTTCATCACTCTACTCTGGCAGAAGGAAACGCTCAAGTCAAGATGGACTCTCATGGCCAATGTTTTCTCTCGCATTAGG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 174 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;