NEXUS
[File created by TreeBASE:  7/26/07  21:18:12]
[Matrix accession#: M3271]

BEGIN TAXA;
	TITLE M3271;
	DIMENSIONS  NTAX=21;
	TAXLABELS
		Dothistroma_pini_DQ915451	Dothistroma_septosporum_DQ915452	Mycosphaerella_graminicola_AF440398	'Cercospora zeae-maydis DQ264761'	Cercospora_zeina_DQ264762	Cercospora_beticola_DQ192582	Stemphylium_sp._AY340942	Pleospora_gracilariae_AY335173	Phaeosphaeria_nodorum_AY212019	Leptosphaeria_maculans_AY174049	Septoria_passerinii_AF483194	Pyrenopeziza_brassicae_AJ006072	Gibberella_zeae_AF318048	Gibberella_circinata_AY219874	Emericella_nidulans_AY328028	Cryphonectria_parasitica_AF380364	Cochliobolus_kusanoi_AF129742	Cochliobolus_heterostrophus_AF027687	Alternaria_alternata_AB009452	Fusarium_oxysporum_AB011378	Magnaporthe_grisea_AB080673
	;
END;

BEGIN CHARACTERS;
	TITLE M3271;
	DIMENSIONS NCHAR=249;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Dothistroma_pini_DQ915451                  GCGAAGGTTGCACGCCCAAAGAACGCATTCATGATCTACCGTCTCGACCACCACGCAAGCGTCTCAGCTGCGCATCCTGGGATGCATAACAACGACATCTCCAAGATCATCGGCAACATGTGGTCTCGCCAGAGTCAAGCTGTCAAAGACGAGTACAAGCAGAGAGCTGAGGACGAGAAGCGCCAGCATGCGATTGCCCATCCGGGCTACCAGTACCAGCCACGCAAGCCATCCGAGAAGAAGAAGCGC
		Dothistroma_septosporum_DQ915452           GCGAAAGTTGCACGCCCAAAGAACGCATTCATGATCTACCGTCTCGACCACCACGCAAGCGTCCTAGCTGCGCACCCTGGAATGCATAACAATGACATCTCCAAGATCATCGGCAACATGTGGTCTCGCGAGAGTCAAGCTGTCAAAGACGAGTACAAGCAGAAAGCTGAGGACGAGAAGCGCCAGCATGCGATCGCCCATCCGGGCTACCAGTACCAGCCACGCAAGCCATCCGAGAAGAAGAAGCGC
		Mycosphaerella_graminicola_AF440398        GGCAAGATCAAGCGCCCAAAGAACGCGTTCCTGATCTATCGCCTCGAGCACCATGCGTTGACTGCAGCCTTGAACCCCGACATGCACAACAACGACATCTCCAAGGTCATCGGCAAGCGTTGGTCCAGCGAGTCTCAGGAGGTCCGAGACCAATATAAGCAGAAGGCTGAGGAGGAGAAGCGTCAGCATGCCATTGAGCATCCGGGATACCAGTACAAGCCTCGCAAGCCATCGGAGAAGAAACGTCGC
		'Cercospora zeae-maydis DQ264761'          GAGAAGACTCCACGTCCCAAGAATGCATTCATGATCTACCGTCTCGACCTCCACGCAACTGTTGCAGCTCAGAACCCTGGCATGCACAACAATGACATTTCCAAGATCATCGGCGCCAGATGGCGATCCGAGAAGCCACATGTCGTAAAAGAGTACAAGAACCGAGCTGAAGAAGAGAAGCGCCAGCACGCAATCGATCATCCAGGCTATCGGTATCAGCCACGCAAGCCGTCCGAGAAGAAGAAGCGC
		Cercospora_zeina_DQ264762                  GAGAAGACTCCGCGTCCAAAGAATGCATTCATGATCTACCGTCTCGACCTCCACGCAACTGTTGCAGCTCAGAACCCTGGCATGCACAACAATGACATTTCCAAGATCATCGGCGCCAAATGGCGATCCGAGAAGCCACATGTCGTAGAAGAGTACAAGAACAGAGCTGAAGAAGAGAAGCGTCAGCACGCAATCGATCATCCAGGCTATCGGTATCAGCCACGCAAGCCATCCGAGAAGAAGAAGCGC
		Cercospora_beticola_DQ192582               GAGAAGACTCCGCGCCCGAAGAATGCATTCATGATCTACCGTCTCGACCTCCACGCGACCGTTGCAGCTCAGAACCCTGGCATGCACAACAATGACATTTCCAAGATCATTGGCGCCAGATGGCGATCCGAGAAGCCACACGTCGTAGAAGAGTACAAGAGCAGAGCTGAAGAGGAGAAGCGTCAGCACGCAATCGACCATCCAGGCTATCGGTATCAGCCACGCAAGCCATCCGAGAAGAAGAAGCGC
		Stemphylium_sp._AY340942                   AAGAAGGCCCCACGTCCGATGAATTGTTGGATCATCTTCCGAGATGTGATGCACAAGCAGCTCAAGGCTGAGCTCCCCAACCTCACAGTCCAGGAGATCTCCACTCGTTGCTCCCGCATCTGGCACAACCTATCTCCCGAAGCCAAGAAGCCCTGGCAGGATGCTGCTCGGTCCGCAAAAGAAGAGCACCTTCGCCAACATCCCGACTACAAGTATAGCCCTAGGAAGCCCGGTGAGAAGAAGAAGCGC
		Pleospora_gracilariae_AY335173             AAAAAGGCCCCACGCCCGATGAATTGTTGGATCATCTTCCGAGATGTGATGCACAAGCAGCTCAAGGCTGAGCTCCCCAACCTCACCGTCCAGGAGATCTCTACTCGTTGCTCCCGCATTTGGCACAACCTATCACCCGAAGCCAAGAAGCCCTGGCAGGATGCTGCTCGATCCGCAAAAGAAGAGCACCTTCGCCAGCATCCCGACTACAAGTATAGCCCTAGGAAGCCTGGCGAGAAGAAGAAACGC
		Phaeosphaeria_nodorum_AY212019             AAGGGCCCACCCCGCCCCATGAACAAGTGGATGCTCTACCGAGATTCGCAATACAAGGTGTTGAAGGTCGAGCAACCTGATCTCACCGTCCAGAAGATCTCCAAGATTTGCTCCGAGCGCTGGCGCAACCTCACTCCAGAAGAGAAGGCATTCTGGGATGCAGCTGGTGCTCGAGCTGCCGAAGAACATGACCGGCTTTACCCTGGCTACAAGTACAATCCACGCAAGCCTGGTGAGAAGAAGAAGCGA
		Leptosphaeria_maculans_AY174049            AAGAGGGCACCTCGTCCCATGAACTGCTGGATCATCTTCAGGGATGCCATGCACAAGAAGCTCAAGTCGGAGAATCCGTCTCTCACTGTACAGCAGATATCGACTCGTTGCTCCGAGATCTGGCACGCTTTCTCTCCCGACGAGAAGAAGGTCTGGCAGACTGCTGCCAAGAATGCGAAGGAGGAGCACTCTCGCCAGCACCCTGATTACAAGTATAGCCCTCGCAAGCCTGGTGAGAAGAAGAAGCGC
		Septoria_passerinii_AF483194               GGCAAGATCAAGCGTCCAAAGAATGCGTTCCTGATCTATCGCCTGAAGTATCACGCGGTGACTGCGGCGCTGAACCCTGGAATGCACAACAACGACATTTCCAAGGCCATCGGGGAGCGCTGGGCTGCCGAGTCTCAAGAAGTCAAGGCCGATTACAAGAAGAAGGCTGAAGAGGAGAAGCGTCAGCATGCCATTGAGCATCCGGGCTACCCGTACAAGCCTCGCAAGCCATCCGAGAAGAAACGCCGC
		Pyrenopeziza_brassicae_AJ006072            AATGTCATCGCTCGTCCACCAAACTGCTTCATTCTCTTCCGCCAGGCAATGCACGCTGCCGTCGTCGCTGCTAACCCCGGTGTTCACAATAACGTTATCTCCCGTCTCATCTCCGGAATGTGGCGCGAATCGCCCCCCGAAATCATTGAGCATTACAAGGCCCTCGCTGAGCTAGCCAAGGCCCGCCACCTTCACTTGTACCCAAACTACAGGTTCACTCCCCGCAAGTCCTCCGACAAGAAGCGCCGT
		Gibberella_zeae_AF318048                   CCTCGTATCCCACGACCTCCCAACGCTTACATCCTCTACCGCAAGGAGCGTCACCAGATCGTCAAGGGAAAGCGCCCTGGTATCACCAACAACGAGATTTCTCAAGTTCTTGGACGATGCTGGAACATGGAGCATCCTGACATTCGCACCTACTACAAGAAGATGGCAGACGACATTAAGGAGGAGCACAAGCGCCTGTACCCTGATTACCAGTACCGCCCTCGCAAGTCTAGAGAGCGACGCCGCCGC
		Gibberella_circinata_AY219874              GCCAAGATCCCACGACCTCCCAATGCCTACATACTTTACCGTAAGGAGCGTCACCATTCGATCAAGGCTCAGCGCCCCGACATCACCAACAATGAAATCTCCCAGGTCCTTGGCCGCCTCTGGAACTCCGAGACCCGCGAGGTTCGCGCACTCTACAAGCAGATGGCGGATCAGAAAAAGGCCGAACATCGCCGACAGTACCCCGACTACCAGTACCGCCCTCGTCGTCCTTCTGAGCGACGCCGTCGC
		Emericella_nidulans_AY328028               GCAAAGATTCCTCGGCCTCCAAATGCGTTCATCCTCTATAGGCAGCATCATTACCCCAAAGTAAAGGAGGCACGACCGGACCTCTCGAACAACGAAATCTCGGTGATAATAGGAAAGAAATGGAGAGCAGAGCCGGAAGAGGGGAAGCTGCACTTCAAGAACCTAGCGGAAGAGTTCAAAAAGAAGCACGCGGAGGAATACCCTGACTACCAGTACACTCCTCGGAAGCCTTCTGAAAAGAAGCGTCGT
		Cryphonectria_parasitica_AF380364          GATCACATTCCTCGTCCCCCTAACCCCTTTATTATCTACCGTGCTGCTCACCACCGGACTGTCTCTGAGGCCCACCCTGACGCATCCAACATCGAGATCTCCAAGAAGATCGGACGTCAGTGGCAGAGCGAGAGCGAGGAAGTCCGTGACGCCTACCGAAAGAAGGCTGCCGACATCAAGGCTGCTTTCATGATAGCCCACCCCGACTACAAGTACCATCCTCGCAAGTCGTCTGAGGTTAAACGCCGT
		Cochliobolus_kusanoi_AF129742              AAAAAGGTTCCACGGCCGATGAATTGCTGGATGATCTTCCGAGACGCAATGCACAAGCATCTTAAGACTGAATTCCCCCACCTCACCATTCAAGAAATCTCTACTCGTTGCTCCCATATTTGGCACAACCTAACCCCCGAGGCCAAGAAGCCTTGGCGGGATGCTGCACAATCCGCGAAGGAAGAACACTCGCGCCGGCATCCTTACTACAAGTACAGCCCGAGAAGACCTGGTGAGAAGAAGAAACGT
		Cochliobolus_heterostrophus_AF027687       AAAAAGGCTCCCCGCCCGATGAACTGTTGGATTATTTTCCGAGATGCAATGCACAAGCATCTAAAGGCCGAATTCCCACACCTCACTATTCAAGAGATCTCTACGCGTTGCTCTCACATTTGGCACAACCTCTCTCCTGAAGCCAAAAAGCCCTGGCAGGACGCTGCCCAATCTGCAAAAGAAGAACACCTCCGCCAGCACCCCAATTACAAGTACACTCCAAGGAAGCCTGGCGAGAAGAAAAAACGT
		Alternaria_alternata_AB009452              AAGAAGGCTCCTCGACCGATGAACTGCTGGATCATCTTTCGAGATGCGATGCACAAGCAGCTGAAGGCTGAATTTCCGAATCTCACTGTTCAGGAGATCTCTACACGCTGCTCCGAAATTTGGCGCAGCCTGACCCCAGAAGGCAAGAAGCCCTGGCAGGCTGCTGCACAGTCGGCGAAAGAAGAGCACCTCCGCCAGCACCCCGACTACAAGTATACTCCCAGGAAACCTGGCGAGAAAAAGAAACGT
		Fusarium_oxysporum_AB011378                GCCAAGATCCCACGACCTCCCAATGCCTACATTCTTTACCGTAAGGAACGTCACCAGTCGATCAAGGCTCAACGCCCGGACATCACCAATAATGAAATCTCCCAGGTCCTTGGCCGCCTCTGGAACTCCGAGACCCGTGAGGTTCGCGCACTCTACAAGCAGATGGCGGATCAGAAAAAGGCCGAACATCGCCGACAGTACCCCGACTACCAGTACCGCCCTCGTCGTCCTTCTGAGCGACGCCGTCGC
		Magnaporthe_grisea_AB080673                GACAAGATCCCTCGTCCTGCGAATGCCTACATCCTGTACCGCAAGGATTGGCATCCCATAGTCAAGTCTGCAAATCCAGGAATCCATAACAACGAAATCTCAAAAATCCTGGGGAAGCAGTGGGCAGCTGAGACACCGGAAGTGCGGGCTGAGTACAAGGAGCTCGCGGAGGAGAAGAAGAGAGAGTTCTACGCAAAGTACCCTACATATCGCTACTCTCCTCGTCGGCCGAGTGAGATAATGCGCCGA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 249 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;