#NEXUS [written Thu Sep 03 09:28:03 EDT 2015 by Mesquite version 3.04 (build 725) at Emilys-MacBook-Air.local/192.168.1.101] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=34; TAXLABELS Barrenia_taeda_WSF14P13 Barrenia_taeda_WSF14P22 Barrenia_taeda_CM14P64 Barrenia_panicia_CM11m2 Barrenia_panicia_AL5m2 Barrenia_panicia_WSF1R37 Phialocephala_dimorphospora_AB671465 Acephala_applanata_KF951051 Phialocephala_fortinii_AB671466 Loramyces_macrosporus_DQ470957 Acidomelania_panicicola_KF874621 Acidomelania_panicicola_KF874622 Mollisia_cinerea_DQ470942 Vibrissea_truncorum_FJ176874 Lachnum_virgineum_AY544646 Neobulgaria_lilacina_EU940141 Varicosporium_elodeae_JN941371 Hyaloscypha_aureliella_EU940152 Hyaloscypha_vitreola_FJ477058 Cudoniella_clavus_DQ470944 Chlorovibrissea_sp_DQ257352 Neobulgaria_pura_FJ176865 Collembolispora_aristata_KC005811 Mollisia_dextrinospora_HM116757 Bulgaria_inquinans_DQ470960 Spathularia_velutipes_FJ997861 Neofabraea_malicorticis_AY544662 Fabrella_tsugae_AF356694 Lambertella_subrenispora_DQ470978 Botryotinia_fuckeliana_AY544651 Monilinia_laxa_AY544670 Dermea_acerina_DQ247801 Leotia_lubrica_AY544644 Microglossum_rufum_DQ470981 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "BarreniaLSU.nexus"'; DIMENSIONS NCHAR=811; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Barrenia_taeda_WSF14P13 GAAAGCTGCC-----AACAGGCCGCATTGTAATTTGTAGAAGATGCTTTGGGGGTTGGCCTAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTAG-TGCCTTCTCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCAGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTCGGTGGCGGGATAAAGGCTCTAGGAATGTGGCTCTTC--------GGAGTGTTATAGCCTAGGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAGCCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Barrenia_taeda_WSF14P22 GAAAGCTGCC-----AACAGGCCGCATTGTAATTTGTAGAAGATGCTTTGGGGGTTGGCCTAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTAG-TGCCTTCTCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCAGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTCGGTGGCGGGATAAAGGCTCTAGGAATGTGGCTCTTC--------GGAGTGTTATAGCCTAGGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAGCCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Barrenia_taeda_CM14P64 GAAAGCTGCC-----AACAGGCCGCATTGTAATTTGTAGAAGATGCTTTGGGGGTTGGCCTAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTAG-TGCCTTCTCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCAGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTCGGTGGCGGGATAAAGGCTCTAGGAATGTGGCTCTTC--------GGAGTGTTATAGCCTAGGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAGCCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Barrenia_panicia_CM11m2 GAAAGCTGCC-----AACAGGCCGCGTTGTAATTTGTAGAAGATGCTTTGGGGGTCGGCCTAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTAG-TGCCGGCTCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCAGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTTGGTGGCGGGATAAAGGCTCTAGGAATGTGGCTCTTC--------GGAGTGTTATAGCCTAGGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAGCCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Barrenia_panicia_AL5m2 GAAAGCTGCC-----AACAGGCCGCGTTGTAATTTGTAGAAGATGCTTTGGGGGTAGGCCTAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTAG-TGCCTGCTCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCAGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTTGGTGGCGGGATAAAGGCTCTAGGAATGTGGCTCTTC--------GGAGTGTTATAGCCTAGGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAGCCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Barrenia_panicia_WSF1R37 GAAAGCTGCC-----AACAGGCCGCGTTGTAATTTGTAGAAGATGCTTTGGGGGTCGGCCTAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTAG-TGCCGGCTCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCAGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTTGGTGGCGGGATAAAGGCTCTAGGAATGTGGCTCTTC--------GGAGTGTTATAGCCTAGGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAGCCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Phialocephala_dimorphospora_AB671465 GAAAGCTGCC-----AACAGGCCGCATTGTAATTTGTAGAAGATGCTTTGGGTGTCGGTCCAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTGG-TGCCGGTACCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTTC-TCAGGCCAGCATCGGTTTCGGTGGTGGGATAAAGGCTGTGGGAATGTGGCCCTTC--------GGGGTGTTATAGCCCACGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Acephala_applanata_KF951051 GAAAGCTGCC-----AACAGGCCGCGTTGTAATTTGTAGARGCTGCTTTGGGTGTCGGCCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATCGG-TGCCGTTGCCCGTGTAAAGCGCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTTC-TCAGGCCAGCATCGGTTTCCGGGGTGGGATAAAGGCGGTGGGAATGTGGCTCTTC--------GGAGTGTTATAGCCCACCGTGCAATGCCGCCACCGGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTAAGAGCCCTTTAGGGTGCATTATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Phialocephala_fortinii_AB671466 GAAAGCTGCC-----AACAGGCCGCGTTGTAATTTGTAGAAGCTGCTTTGGGTGTCGGCCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATCGG-TGCCGTTGCCCGTGTAAAGCGCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGGGCGGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTTC-TCAGGCCAGCATCGGTTTCCGGGGTGGGATAAAGGCGGTGGGAATGTGGCTCTTC--------GGAGTGTTATAGCCCACCGTGCAATGCCGCCACTGGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTAAGAGCCCTTTAGGGTGCATTATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Loramyces_macrosporus_DQ470957 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCTATATCATCTAAAGCTACATATTGGCCAGAGGCCGATAGCGCACAAGTAGAGTGATCGAAAGATG?AAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCAGGCGGTTGATCATCCGGGGTTT-TCCCCGGTGCACTCGATCGTCT-TCAG??CAGCATCAGTTCTCGTGGTGGGATAAAGGCTGTGAGAATGTGGCTCTTC--------GGAGTGTTATAGCTCACGGTGCAATGCTGCCTACGGGGACTGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Acidomelania_panicicola_KF874621 GAAAGCTGCC-----AACAGGCCGCGTTGTAATTTGTAGAAGATGCTTTGGGTGTCGGCCCAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTGG-TGCCGTCCCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCAGGCGGTTGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTCAGTGGTGGGATAAAGGCTGTGAGAACGTGGCTCTTC--------GGAGTGTTATAGCTCACGGTGCAATGCCGCCTACTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGACCCCATTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Acidomelania_panicicola_KF874622 GAAAGCTGCC-----AACAGGCCGCGTTGTAATTTGTAGAAGATGCTTTGGGTGTCGGCCCAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTGG-TGCCGTCCCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCAGGCGGTTGATCATCCGAGGTTC-TCCCCGGTGCACTCGATCGTCT-TCAGGCCAGCATCGGTTTCAGTGGTGGGATAAAGGCTGTGAGAACGTGGCTCTTC--------GGAGTGTTATAGCTCACGGTGCAATGCCGCCTACTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGACCCCATTAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Mollisia_cinerea_DQ470942 GAAAGCTACC-----AACAGGTCGCATTGTAATTTGTAGAAGATGCTTTGGGTGTTGACCTAGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATTAG-TGTCAGCCCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCAGGCAGTCGATCATCCGAGGTTC-TCCCCGGTGCACTCGATTGTCT-TCAGGCCAGCATCGGTTTCGGTGGTGGGATAAAGGCTGTGGGAATGTGGCTCTTC--------GGAGTGTTATAGCCCACGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTTAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Vibrissea_truncorum_FJ176874 GAAAGCTGCC-----AACAGGCCGCATTGTAATTTGTAGAGGATGCTTTGGGGGTTGGCCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGCCCGG-TGCCCGCCCCCGTGTAAAGCTCCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCAGGCGGTCGATCATCCGGGGTTC-TCCTCGGTGCACTCGGCCGTCT-TCAGGCCAGCATCAGTTTCGGTGGTGGGATAAAGGCCTTGGGAATGTAGCTTCTT------CGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGGGACTGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGGAATGAAAGTGAACGGAGGTAAGAACCCTTTAGGGCGCATTATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Lachnum_virgineum_AY544646 GAAATCTGGCTCTTTTAGGGTCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTGTGGCCCTGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTAGGTGCCTTCGCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTAGTTGCTGCCGATCATCCAGGGTTC-TCCCTGGTGCACTCGGTAGTAT-CTAGGCCAGCATCGGTTTGGGTGGTGGGATAAAGGCCTTGGGAATGTAGCTTCTTTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCCGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCCACCCGTCTTGAAACACAGACCAAGGAGTCTAACATCTATGCGAGTATTTGGGTGTTAAACCCATATGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Neobulgaria_lilacina_EU940141 GAAATCTGGCTCTTTTAGGGTCCGAGTTGTAATTTGTAGAAGATGCTTCGGGTGCGGTCCCGGTCTAAGTTCCTTGGAAGAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACCGGGTGCCCGCGCCCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCGCGCCGTCGATCATCCCAGGTTC-TCCTGGGTGCACTCGGCGGCGT-TCAGGCCAGCATCGGTTCTGGTGGTGGGATAAAGGCCTTGGGAATGTAGCTCCTTTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGCTAAGAACCCTTTAGGGTGCATTAGCGACCGATCCTGATGTCTTCGGACGGATTTGAGTACGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGCATAGGGGC-GAAAGACTAATCG Varicosporium_elodeae_JN941371 GAAATCTGCC-----GCAAGGCCGAGTTGTAATTTGTAGAAGATGCTTTGGGTATGGCCCCGGTCTAAGTTCGTTGGAACACGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGGTGCTTTTGCCTATGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCACGCTGTTGATCATCCAGGCTTC-TGTTTGGTGCACTCAACTGTGT-TCAGGCCAGCATCGGTTTTGGTGGTGGGATAAAGGCCTTGGGAATGTAGCTTCTTTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATTAACGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Hyaloscypha_aureliella_EU940152 GAAATCTGGCTCCTGCGGGGCCCGAGTTGTAATTTGTAGAAGATGCTTTGAGCGTGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGGTGCCTCCGTTCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCTGCTGATCATCCGAGGTTC-TCCCCGGTGCACTCGGCAGCGA-TCAGGCCAGCATCGGTTCTGGTGGGCGGATAAAGGCCTTGGGAATGTAGCTTCCTTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCGCCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Hyaloscypha_vitreola_FJ477058 GAAATCTGGCTCTTTCAGGGTCCGAGTTGTAATTTGTAGAAGATGCTTTGAGTGTGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTACGTGACTGGGTGCCTCCGCTCATGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCATGCAGTTGATCATCCGAGCTTT-TGCCCGGTGCACTCGATTGTAT-TCAGGCCAGCATCGGTTTCGGTGGGCGGATAAAGGCCTTGGGAATGTAGCTTCTTTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCGCCCTATCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Cudoniella_clavus_DQ470944 GAAATCTGGCTCTTTCAGGGTCCGAGTTGTAATTTGTAGAAGATGCTTCGGGTGTGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGTTGCCTTCGCCCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCACGTCGTCGATCATCCTCAGTTC-TCTGGGGTGCACTCGGCGGTGT-TCAGGCCAGCATCGGTTTCGGTGGTGGGATAAAGGCCTTGGGAATGTGGCTCCTCTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTTAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Chlorovibrissea_sp_DQ257352 GAAATCTGGC-----TTCGGCCCGAGTTGTAATTTGCAGAAGATGCTTTGGGGGTGGTCCCGGTCTAAGTCCCTTGGAACAGGACGTCATAGAGGGTGAGAACCCCGTATGTGACCGG-TGCCCGCTCCCGTGTAAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACTAGACTCGCAGGCCGTCGATCACCCGGTGTTC-TCACCGGGGCACTCGGCGGTCT-TCGGGCCAGCATCGGTTTGGGTGGTGGGAGAAAGACCTTGGGAATGTGGCTCCTC------CGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACCCAGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTATTTGGGTGTTAAACCCATATGCGAAATGAAAGTGAACGTAGGTGAGAACCCTTTAGGGTGCATCATCGACCGATCCTAATGTCTTCGGACGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTAAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Neobulgaria_pura_FJ176865 ----------------------CGAGTTGTAATTTGCAGAAGAGTCTTCGGGTGTGGCCCCGGTCTAAGTCCCTTGGCACAGGACGTCATAGAGGGTGAGAACCCCGTATGTGACCGGGCGCCTACGCCCATGTGAAGCTCTTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTCCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTCAAATAGTACGTGAAATTGTTAAAAGGGAAGCTCTTGCTACCAGACGCGGGCGCCGTTGATCATCCTAGGTTC-TCCTGGGTGCACTCGGCGGTGC-TCGGGTCAGCATCGGTTTGGGTGGCGGGACAAAGGCCTTGGGAATGTAGCTCCCCCCTCGGGGGGAGTGTTATAGCCCTCGGTGTAATGCCGCCTACCCGGACCGAGGACCGCGCTTC-GGCGAGGATGCTGGCATAATGGTCGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGGTAAACCCATTCGCGGAATGAAAGTGAACTTAGCTGAGAACCCCTCGGGGCGCACCAGCGACCGATCCTGATGTCTTCGGACGGATTTGAGTATGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCTTGCATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATGTGGGCATAGGGGC-GAAAGACTAATCG Collembolispora_aristata_KC005811 GAAAGCTGGCTCTTTTAGGGTCCGCGTTGTAATTTGTAGAAGATGCTTCGGGTGTGGCCCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGGTGCTTTCGCTCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGCGCTGATGATCATCCGGGCTTC-TGTCCGGTGCACTCGTCTGCGC-TCAGGCCAGCATCGGTTTCGGTGGTGGGATAAAGGCCTTGGGAATGTGGCTCCTCTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Mollisia_dextrinospora_HM116757 GAAAGCTAGCTCTTCTAGGGTTCGCATTGTAATTTGTAGAAGATGCTTCGGGTGTGGCCCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGGTGCTTTCGCTCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGCGCTGATGATCATCCGGGCTTC-TGTCCGGTGCACTCGTCTGCGC-TCAGGCCAGCATCGGTTTCGGTGGTGGGATAAAGGCCTTGGGAATGTAGCTTCTTTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCCGCCTACTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Bulgaria_inquinans_DQ470960 GAAATCTGGCCCTTTCAGGGTCCGAGTTGTAATTTGTAGAGGATGTTTCGGGCGTGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGTAGCCTATGCCCATGTGAAACTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCACGTGGCCGATCAACCGGTGTTC-TCACCGGTGCACTCGGTTGCGT-TCAGGCCAGCATCGGTTTCGACGGTTGGATAAAGGCCCCGGGAATGTAGCTTCTTTC----GGGGAGTGTTATAGCCCGGGGTGCAATGCAGCCTGTTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Spathularia_velutipes_FJ997861 GAAAGCTGGCTCTTGCAGAGCCCGCGTTGTAATTTGTAGAGGATGCTTCGGGTGCGGCGCTGGTCTAAGTTCTTTGGAACAAGACGTCATAGAGGGTGAGAATCCCGTATGTGACTAGCTGCCTGTGCCTGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTGTACTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCGCGGCGTCGATCAACCTGGGTTC-TCCCTGGTGCACTCGGCGCTGC-TCAGGCCAGCATCAGTTTCAGCGGTTGGATAAAGGCCTAGGGAACGTGGGTTACTTC----GGTGACTGTTATAGCCCTAGGTGCAATGCAGCCTGCTGGGACTGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTGTAATATTTATGCGAGTTTTTGGGTGTTAAACCCATAAGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAACTATTGCGACCCGAAAGATGATGATCTATACTTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Neofabraea_malicorticis_AY544662 GAAATCTGGGTCTTTCAGGCTCCGAGTTGTAATTTGTAGAAGATGCTTCGGGTGCGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATCGGTTGCTTGCGCCCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGTGTCGTCGATCATCCGGGGTTC-TCCCCGGTGCACTCGGCTTCAC-TCAGGCCAGCATCGGTTTCGGTGGTTGGATAAAGGCCTTGGGAATGTAGCTCCTCTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCAGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGGAAAGACTAATCG Fabrella_tsugae_AF356694 GAAATCTGGCTCTTTCAGGGTCCGAGTTGTAATTTGTAGAAGATGTTTCGGGTGTGGCCCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGGTGCCTACGCCTATGTGAAACTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCGCCTGGGCGATCATCTGGGGTTC-TCCCCAGTGCACTCGTTCAGGC-TCAGGCCAGCATCGGTTTCGGTGGTTGGATAAAGGCCTTGGGAATGTGGCCCCTCTC----GGGGGGTGTTATAGCCCTCGGTGCAATGCAGCCTACCGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACAGGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Lambertella_subrenispora_DQ470978 GAAATCTGGCTCTTTCAGGGTCCGAGTTGTAATTTGTAGAAGATACTTCGGGTGTGGTACCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACCGGTGGCCTACGCCCATGTGAAGTTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCGCCTAGTTGATCATCTGGGCTTC-TGTCCAGTGCACTCGATTAGGC-TCAGGCCAGCATCGGTTTGAGTGGTTGGATAAAGGCTTAGGGAACGTGGCCTCTCTC----GGGAGGTGTTATAGCCCTAGGTGCAATGCAGCCTACTTGGACCGAGGGCCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATTTATGCGAGTATTTGGGTGTTAAACCCATATGCGTAATGAAAGTGAACGGAGGTAAGAACTCTTAAGAGTGCATTATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAACTGTTGGGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Botryotinia_fuckeliana_AY544651 GAAATCTGGCTCTTTTAGAGTCCGAATTGTAATTTGTAGAAGATGCTTCGGGTGTGGTTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGATACCTATGCTCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGAGGTATATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCACTTGGT-GTTCATCAGGGTCTCGTACCCTGTGTACTTCATCAAGT-TCAGGCCAGCATCAGTTTGAGTGGTTAGATAAAGGCTTAGAGAATGTGGCCCTCTTC----GGGGGGTGTTATAGCTCTAGGTGCAATGTAGCCTACTTGGACTGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACCGACC-AGGAGTGTACCTAATATGCGAGTGTTTGGGTGTTAAACCCATACGCGTAATGAAAGTGAACGCTGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCTTGATGTCTTCGGATGGATTTGAGTAAGAGCATATTGGGTGCGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Monilinia_laxa_AY544670 GAAATCTGGCTCTTTTAGAGTCCGAGTTGTAATTTGTAGAAGATGCTTCGGGTGTGGTTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGACTGGATACCTATGCTCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAATCAGACTTGCACTTGGT-GTTCATCGGGGTTTC-TACCCCGTGTACTTCATCAAGT-TCAGGCCAGCATCAGTTTGGGTGGTTAGATAAAGGCTTAGAGAATGTGGCCCTCTTC----GGGGGGTGTTATAGCTCTAGGTGCAATGTAGCCTACCTGG??TGAGG?CCGCGCTTC-GGCTA?GATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTGTACCTAATATGCGAGTGTTTGGGTGTT-AACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAGCCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATATTGGGTGCGACCCGAAAGATGGTGATCTATACGTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGCGTATAGGGGC-GAAAGACTAATCG Dermea_acerina_DQ247801 GAAATCTGGGTCTTTTAGGCTCCGAGTTGTAAT?TGTAGAAGATGCTTCGGGTGCGGCTCCGGTCTAAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTATGTGATCGGGGGCTTGCGCCCATGTGAAGCTCTTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTATATTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGGGCGGGGTTGATCATCTAGGGTTC-TCCCTAGTGCACTCGACCTCGC-ACAGGCCAGCATCGGTTCCGGTGGTTGGATAAAGGCCTTGGGAATGTAGCTTCTTTC----GGGGAGTGTTATAGCCCTCGGTGCAATGCAGCCTACTGGGACCGAGGACCGCGCTTC-GGCTAGGATGCTGGCGTAATGGTTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCATACGCGTAATGAAAGTGAACGGAGGTGAGAACCCTTAAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG Leotia_lubrica_AY544644 GAAATCTGGCCCA--CGTGGCCCGAGTTGTAATTTGTAGAGGATGCTTCGGGCGTGG-TCCGGCCTAAGTCCCTTGGCACAGGGCGTCATAGAGGGTGAGAACCCCGTATGTGGCCGGGTGCCTAGGCCCGTGTGAAGCTCCGTCGACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTTGGGCGCGGCTGATCATCCGGCGTTC-TCGCCGGTGCACTCGGCCGCGTGCCAGGCCAGCATCGGTTCCGGCGGCCAGACAAAGGCCGGGCGAACGTGGCTCCCCC-----AGGGAGTGTTATAGCGCCCGGCGCCATGTGGCCTGCTGGGACCGAGGACCGCGCCTCTGGCTAGGATGCTGGCGTAATGGTCGCAAGCGACCCGTCTTGAAACACGGACCAAGGAGTGGAATAATCATGCGAGTGTTTGGGTG-CAAACCCATGCGCGAAATGAAAGTGAACGGAGGTGAGAGCCCGCCAGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATGGCTGTTCCGACCCGAAAGATGGTGAACTATGCGTGGATAAGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATCTGTGCATAGGGGC-GAAAGACTAATCG Microglossum_rufum_DQ470981 GAAATCTGGC---CTTCGGGCCCGAGTTGTAATTTGTAGAGGATGCTTCGGGCGT-GGTCTGGCCTAAGTTCCTTGGAACAGGACGTCGTAGAGGGTGAGAATCCCGTATGCGGCCGGGTGCCTAAGCCTATGTGAAGCTCCTTCGATGAGTCGGGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCGTGCGGCTGATCATCCGGCGTTC-TCGCCGGTGCACTCGGCCGCAC-ACAGGCCAGCATCGGTTCTGGTGGCTAGACAAAGGCCCTGGGAATGTGGCTCCCTTT----GGGGAGTGTTATAGCCCTCGGTGCAATGTAGCCCACTAGGATCGAGGACCGCGCCTCTGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGAAACACGGACCAAGGAGTGGAATATCTATGCGAGTGTTTGGGTGTTAAACCCCTACGCGGAATGAAAGTGAACGGAGGTGAGAGCCCTTCAGGGTGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTATTCCGACCCGAAAGATGGTGATCTATACCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC-GAAAGACTAATCG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "BarreniaLSU.nexus"') = unord: 1 - 811; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "BarreniaLSU.nexus"') = universal: 1 - 811; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "BarreniaLSU.nexus"') = 'Jukes-Cantor': 1 - 811; END; BEGIN TREES; Title 'Trees from "LSUtree.tre"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Barrenia_taeda_WSF14P13, [1] 2 Barrenia_taeda_WSF14P22, [2] 3 Barrenia_taeda_CM14P64, [3] 4 Barrenia_panicia_CM11m2, [4] 5 Barrenia_panicia_AL5m2, [5] 6 Barrenia_panicia_WSF1R37, [6] 7 Phialocephala_dimorphospora_AB671465, [7] 8 Acephala_applanata_KF951051, [8] 9 Phialocephala_fortinii_AB671466, [9] 10 Loramyces_macrosporus_DQ470957, [10] 11 Acidomelania_panicicola_KF874621, [11] 12 Acidomelania_panicicola_KF874622, [12] 13 Mollisia_cinerea_DQ470942, [13] 14 Vibrissea_truncorum_FJ176874, [14] 15 Lachnum_virgineum_AY544646, [15] 16 Neobulgaria_lilacina_EU940141, [16] 17 Varicosporium_elodeae_JN941371, [17] 18 Hyaloscypha_aureliella_EU940152, [18] 19 Hyaloscypha_vitreola_FJ477058, [19] 20 Cudoniella_clavus_DQ470944, [20] 21 Chlorovibrissea_sp_DQ257352, [21] 22 Neobulgaria_pura_FJ176865, [22] 23 Collembolispora_aristata_KC005811, [23] 24 Mollisia_dextrinospora_HM116757, [24] 25 Bulgaria_inquinans_DQ470960, [25] 26 Spathularia_velutipes_FJ997861, [26] 27 Neofabraea_malicorticis_AY544662, [27] 28 Fabrella_tsugae_AF356694, [28] 29 Lambertella_subrenispora_DQ470978, [29] 30 Botryotinia_fuckeliana_AY544651, [30] 31 Monilinia_laxa_AY544670, [31] 32 Dermea_acerina_DQ247801, [32] 33 Leotia_lubrica_AY544644, [33] 34 Microglossum_rufum_DQ470981; TREE tree1 = (((((((((((1:0.0,2:0.0)0.266:0.0,(3:0.0,(4:0.0,(5:0.0,6:0.0)0.232:0.0)0.662:0.00622472)0.022:0.0)0.994:0.04139257,((7:0.01471216,(8:0.0,9:0.00626509)1.0:0.05513326)0.526:0.0108467,(10:0.04854514,(11:0.0,12:0.0)0.944:0.00969462)0.634:0.02317705)0.162:0.0)0.154:0.00612302,13:0.0)0.738:0.04968341,14:0.03347888)0.09:0.00697446,((15:0.06357728,16:0.02359031)0.014:0.00430747,(17:0.01271177,(18:0.03016061,19:0.03005182)0.504:0.03064032)0.044:0.0)0.038:0.00569785)0.004:0.00603928,(20:0.00000249,(21:0.03802578,22:0.07457027)0.676:0.02930768)0.246:0.02746162)0.082:0.01304063,(23:0.01909038,24:0.0)0.494:0.00665163)0.174:0.01460374,((25:0.05422782,26:0.10702918)0.288:0.01950369,(27:0.01498726,(28:0.02145335,(29:0.01774886,(30:0.01416389,31:0.00995386)0.998:0.11343261)0.734:0.06425648)0.578:0.05827925)0.052:0.01826003)0.016:0.0)0.216:0.0204968,32:0.01880319)0.728:0.03252099,(33:0.2113544,34:0.03907507)0.728:0.04136104); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1441286883652; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2975151441021149846; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2219923836721038409; mqVersion 304; checksumv 0 3 3066003132 null getNumChars 811 numChars 811 getNumTaxa 34 numTaxa 34 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 564888.0 sumSquares 4.6116860184274176E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 349; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1390 572; setLocation 36 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2975151441021149846 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1460.1441226998927.5718979282185008326; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1041 500; setLocation 36 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2219923836721038409 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 400; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1041 500; setLocation 36 25; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;