#NEXUS [written Thu Sep 03 09:50:11 EDT 2015 by Mesquite version 3.04 (build 725) at Emilys-MacBook-Air.local/192.168.1.101] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=21; TAXLABELS Barrenia_panicia_AL5m2 Barrenia_panicia_CM11M2 Barrenia_panicia_WSF1R37 Acephala_sp._GU973749_Sugarcane_root_Brazil Acephala_sp._HQ889709_Cymbidium_insigne_root_China Barrenia_taeda_CM14P64 Barrenia_taeda_WSF14P22 Barrenia_taeda_WSF14P13 Phialocephala_sp._JQ272328_Rhododendron_root_USA Mollisia_cinerea_DQ491498 Phialocephala_scopiformis_AF486126 Loramyces_macrosporus_DQ471005 Acidomelania_panicicola_KF874619 Acidomelania_panicicola_KF874620 Acephala_macrosclerotiorum_HM189719 Vibrissea_truncorum_EU434855 Acephala_applanata_AY078145 Phialocephala_fortinii_AB671499 Hyaloscypha_aureliella_JN943611 Lachnum_virgineum_DQ491485 Dermea_acerina_AF141164 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "BarreniaITS.nexus"'; DIMENSIONS NCHAR=573; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Barrenia_panicia_AL5m2 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TCTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GCGGGCTCTGCCT-GCGTGTGCCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTAGCTTGGTATTGGGGTTCGCGGT--CCCGCGGCCCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTCCCC---------------------------CCGGTTGCCCGC Barrenia_panicia_CM11M2 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TCTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GCGGGCTCTGCCT-GCGTGTGCCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTAGCTTGGTATTGGGGTTCGCGGT--CCCGCGGCCCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTCCCC---------------------------CCGGTTGCCCGC Barrenia_panicia_WSF1R37 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TCTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GCGGGCTCTGCCT-GCGTGTGCCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGGACTCGCGGT--TCCGCGGCCCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTCCCT---------------------------CCGGTTGCCTGC Acephala_sp._GU973749_Sugarcane_root_Brazil GTGTCTC-----------------------------------------------------------------------------------------------------------------------TCTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GCGGGCTCTGCCT-GCGTGTGCCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGGGTTCGCGGT--TCCGCGGCCCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTCCCC---------------------------CCGGTTGCCTGC Acephala_sp._HQ889709_Cymbidium_insigne_root_China GTGTCTC-----------------------------------------------------------------------------------------------------------------------TCTACTCT----TGT-TGCTTTGGCAGGTCG--------TG-GCCC-CCACC--GCGGGCTCTGCCT-GCGTGTGCCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGGGTTCGCGGT--TCCGCGGCCCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTCCCC---------------------------CCGGTTGCCTGC Barrenia_taeda_CM14P64 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TTTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GTGGGCTCTGTCT-ACGCGTGTCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGGGTACGCGGC--TTCGCGGCTCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTTCCT---------------------------CTGGTTGCTTGC Barrenia_taeda_WSF14P22 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TTTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GTGGGCTCTGTCT-ACGCGTGTCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGGGTACGCGGC--TTCGCGGCTCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTTCCT---------------------------CTGGTTGCTTGC Barrenia_taeda_WSF14P13 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TTTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GTGGGCTCTGTCT-ACGCGTGTCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGGGTACGCGGC--TTCGCGGCTCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTTCCT---------------------------CTGGTTGCTTGC Phialocephala_sp._JQ272328_Rhododendron_root_USA GTGTCTA-----------------------------------------------------------------------------------------------------------------------TTTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACC--GTGGGCTCTGTCT-ACGCGTGTCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGGGTACGCGGC--TTCGCGGCTCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTAAGCGTAGTAA-ATCTCCTCGCTATAGGGTTCCT---------------------------TTGGTTGCTTGC Mollisia_cinerea_DQ491498 GTGTCTA-----------------------------------------------------------------------------------------------------------------------CATACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GTCT-CCACT--GTGGGCTCTGCCT-ACATGTGCCTGCCAGAGGA-CC--AAAATCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTATTGGAGTTTGCGGT--TCCGCAGCTCCTAAAATCAGTGGCGGTGCCGGTGTGGCTCTACGCGTAGTAA-TTCTTCTCGCGATGGAGTTCCC---------------------------CTGGTTGCTTGC Phialocephala_scopiformis_AF486126 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TCTACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACT--GTGGGCTCTGCCT-GCATGTGCCTGCCAGAGGA-TT--AAACTCTGAATTTTAGTGATGTCTGAGAACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGGCTTGGTGTTGGGGTTTGCGGT--TCCGCAGCCCCTAAAATCAGTGGCGGTGCCGGTG-GGCTCTACGCGTAGTAA-ATCTCCTCGCGATTGAGTTCCC---------------------------CCGGTGGCCTGC Loramyces_macrosporus_DQ471005 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TATACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GTCT-CGACCCTGTGGGCTTTGCCT-GCATGTGCCTGCCAGAGGA-CC--AAACTCTGAATTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCTCTATCAACCTACACGCTCCGCGTGGAATTGGGGCCTGCGGTCACCTGCAGCCCTAGAACCCAACAGCGATACCGAGT-GGTCCTCAGCGTAGTAC-ATACCC-CGCTACAGGCCTCCT---------------------------CTGGTGTTCTGC Acidomelania_panicicola_KF874619 GTGTCTA-----------------------------------------------------------------------------------------------------------------------CATACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCTCCCACT--GTGGGCTCAGCCT-GCATGTGCCTGCCAGAGGA-CC--AAACTCTGAATGTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCGGTGGCATTCCGCCGGGTATGCCTGTTCGAGCGTCATTATAACCACTCAAGCCTGTCTTGGTGTTGGGGATTGCGAAT-CTCGCAGCCCTAGAGTCCAGTAGCGTCACCTGTG-GGTCCTAAGCGTAGTAATTTCTCCTCGCTACAGAGCCTGCTCGTGGATAGTGTAAATCCAGTTCGGTCTGGTATCCCGC Acidomelania_panicicola_KF874620 GTGTCTA-----------------------------------------------------------------------------------------------------------------------CATACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCTCCCACT--GTGGGCTCAGCCT-GCATGTGCCTGCCAGAGGA-CC--AAACTCTGAATGTTACTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACCCGGTGGTATTCCGCCGGGTATGCCTGTTCGAGCGTCATTACAACCACTCAAGCCTGTCTTGGTGTTGGGGATTGCGAAT-CTCGCAGCCCTAGAGTCCAGTAGCGTCACCTTTA-GGTCCTAAGCGTAGTAATTTCTCCTCGCTACAGAACCTGCCGGTGGATAGTATAAATCCAGTTAAGTCTGGTATCCCGC Acephala_macrosclerotiorum_HM189719 GTGTCTA-----------------------------------------------------------------------------------------------------------------------TATACTCT----TGT-TGCTTTGGCGGGCCG--------TG-GCCT-CCACT--GCGGGCTCTGCTC-GTGAGTGCCCGCCAGAGAA-CC--AAACTCTGAATGTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATT-TAACCACTCAAGCCTAGCTTGGTATTGGGGCACGTGGT--TCCGCGGCCCTCAAAATCAGTGGCGGCGCCGGTG-GGCTCTAAGCGTAGTAC-ATACTCCCGCTATAGAGTTCCC---------------------------CCGGTCGCTCGC Vibrissea_truncorum_EU434855 GTGTTTA-----------------------------------------------------------------------------------------------------------------------CATACTCT----TGT-TGCTTTGGCAGGCCG--------TG-GCCT-CCACT--GCGGGCTCTGCTC-GTACGTGCCCGCCAGAGGA-CC--AAACTCTGAATGTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGGTGGTATTCCGCCGGGCATGCCTGTTCGAGCGTCATTATAACCAATCACGCCTGGCGTGGTGTTGGGGCACACGGC--TCCGTGGCCCTCAAAATCAGTGGCGATGCCGGTT-GGCTCTAAGCGTAGTAA-CTTCTCTCGCTATAGATGTCTG---------------------------CTGGTTGCTCGC Acephala_applanata_AY078145 GTGTTTA-----------------------------------------------------------------------------------------------------------------------CATACTAT----TGT-TGCTTTGGCGGGCCG--------TG-GCCT-CCACT--GCGGGCTCTGCTC-GTGTGTGCCCGCCAGAGAA-CC--AAACTCTGAATGTTAGTGATGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATT-TAACCACTCACGCCTAGCGTGGTATTGGGGCACGCGGTC-TCCGCGGCCCTCAAAATGAGTGGCGGCGCCGGTG-GGCTCTAAGCGTAGTAC-ATACTCCCGCTATAGAGTTCCC---------------------------CCGGTGGCTCGC Phialocephala_fortinii_AB671499 GTGTTTA-----------------------------------------------------------------------------------------------------------------------CATACTAT----TGT-TGCTTTGGCGGGCCG--------TG-GCCT-CCACT--GCGGGCTCTGCTC-GTGTGTGCCCGCCAGAGAA-CC--AAACTCTGAATGTTAGTGATGTCTGAGTACTATCTAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTGTGGTATTCCGCAGGGCATGCCTGTTCGAGCGTCATT-TAACCACTCACGCCTAGCGTGGTATTGGGGCACGCGGTC-TCCGCGGCCCTCAAAATGAGTGGCGGCGCCGGTG-GGCTCTAAGCGTAGTAC-ATACTCCCGCTATAGAGTTCCC---------------------------CCGGTGGCTCGC Hyaloscypha_aureliella_JN943611 GTGCCTGGTCTAAGATATAGTCGGTCCCGGCCCGAAAGGGCCGGGGAACAGCGTCCGTAGGTGAACCTGCGGAAGGATCATTACAGAGTTCATGCCCTCACGGGTAGATCTCCCACCCTTGAATACCTTACCTT----TGTCTGCTTTGGCGGGCCA--------CG-TCCG-C--GT--GCCGGCTCCGGCT-GGTTGCGCCCGCCAGAGGACCC--AAACTCTTTTGTTTAGTGATGTCTGAGTACTATATAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTATGACCACTCAAGCCTGGCTTGGTGTTGGGGTCCGCGGT--CCCGCGGCCCTTAAAATCAGTGGCGGCGCCATCT-GGCTCTCAGCGTAGTAA-TACTCCTCGCTACAGGGTCCC---------------------------------------- Lachnum_virgineum_DQ491485 TTGTGTA------------------------------------------------------------------------------------------------------------------------TCATTATAGAATGT-TGCTTTGGCGGGCTG--------CGTGCCTAGCACG--CCTCGATTCGCGTCGAGCGCGCCCGCCAGAGGACCCCTAAACTSTGAATGTTAGTGTCGTCTGAGTACTATTAAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTTATACCAATCTARCCTGGCTAGGTGTTGGGCCTCGCCAG--TTGGCGGGCCTTAAAACTAGTGGCGGTGCTCTTC-AGCTCTACGCGTAGTA--ATTTTCTCGCTATAGGGTCTGG---------------------------GGAGATGCTTGC Dermea_acerina_AF141164 GTGTCGT-----------------------------------------------------------------------------------------------------------------------TATACCTT----CGT-TGCTTTGGTGGGCCGCTGGGCTTCG-GCCT--GGCT--CCTGGCTCCGGCTAGGGAGTGCCCGCCAGAGGACCT--TAAAACCTGAAGTTAGTGTCGTCTGAGTACTATACAATAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTACAACC-CTCAAGCTCTGCTTGGTATTGGGCGTCACCGGGTTCGGTGTGCCTTAAAATCAGTGGCGGCGCCGTCT-GGCTCTAAGCGTAGTAC-ATACTCTCGCTATGGACGCCTG---------------------------GCGGATGCTTGC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "BarreniaITS.nexus"') = unord: 1 - 573; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "BarreniaITS.nexus"') = universal: 1 - 573; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "BarreniaITS.nexus"') = 'Jukes-Cantor': 1 - 573; END; BEGIN TREES; Title 'Trees from "ITStree.tre"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Barrenia_panicia_AL5m2, [1] 2 Barrenia_panicia_CM11M2, [2] 3 Barrenia_panicia_WSF1R37, [3] 4 Acephala_sp._GU973749_Sugarcane_root_Brazil, [4] 5 Acephala_sp._HQ889709_Cymbidium_insigne_root_China, [5] 6 Barrenia_taeda_CM14P64, [6] 7 Barrenia_taeda_WSF14P22, [7] 8 Barrenia_taeda_WSF14P13, [8] 9 Phialocephala_sp._JQ272328_Rhododendron_root_USA, [9] 10 Mollisia_cinerea_DQ491498, [10] 11 Phialocephala_scopiformis_AF486126, [11] 12 Loramyces_macrosporus_DQ471005, [12] 13 Acidomelania_panicicola_KF874619, [13] 14 Acidomelania_panicicola_KF874620, [14] 15 Acephala_macrosclerotiorum_HM189719, [15] 16 Vibrissea_truncorum_EU434855, [16] 17 Acephala_applanata_AY078145, [17] 18 Phialocephala_fortinii_AB671499, [18] 19 Hyaloscypha_aureliella_JN943611, [19] 20 Lachnum_virgineum_DQ491485, [20] 21 Dermea_acerina_AF141164; TREE tree1 = (((((((((1:0.0,2:0.0)0.954:0.00544487,3:0.00544293)0.116:0.0,(4:0.0,5:0.00544096)0.89:0.002726)0.732:0.00219417,((6:0.0,7:0.0)0.228:0.0,(8:0.0,9:0.0)0.212:0.0)1.0:0.02919395)0.618:0.01151005,((10:0.02247703,11:0.0194149)0.89:0.01100049,(12:0.10709963,(13:0.0024776,14:0.01422255)1.0:0.05869083)0.962:0.03975681)0.47:0.01161509)0.678:0.01842592,(15:0.01155763,(16:0.05593375,(17:0.00774464,18:0.00886126)0.614:0.00854673)0.488:0.0090619)0.846:0.02870202)0.908:0.04320339,19:0.09213045)0.928:0.0324798,20:0.14174607)0.0:0.01963146,21:0.07310212); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1441288211957; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3813246832167543632; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8829887353204751536; mqVersion 304; checksumv 0 3 1221468388 null getNumChars 573 numChars 573 getNumTaxa 21 numTaxa 21 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 197961.0 sumSquares -4.6116860184273439E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 349; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1164 553; setLocation 83 66; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3813246832167543632 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2319.1441288195438.3197812908513610617; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 815 481; setLocation 83 66; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8829887353204751536 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 271; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 815 481; setLocation 83 66; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;