#NEXUS [written Sun Sep 06 12:10:49 CST 2015 by Mesquite version 3.01 (build 658) at TOSHIBA/192.168.0.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=35; TAXLABELS Alliaria_petiolata Arabidopsis_lyrata Alyssum_alyssoides Arabidopsis_thaliana Barbarea_vulgaris Brassica_rapa Aethionema_subulatum Physaria_newberryi Boechera_canadensis Turritis_glabra Cleome_serrulata Sisymbrium_officinale Rorippa_sylvestris Aethionema_grandiflorum Camelina_sativa Cardamine_pensylvanica Chorispora_bungeana Capsella_rubella Catolobus_pendulus Hesperis_matronalis Coincya_monensis Erysimum_cheiranthoides Brassica_nigra Berteroa_incana Cakile_maritima Hirschfeldia_incana Raphanus_raphanistrum Lepidium_campestre Lunaria_annua Lepidium_didymum Eutrema_salsugineum Thlaspi_arvense Schrenkiella_parvula Smelowskia_tibetica Thlaspi_alliaceum ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=405; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Alliaria_petiolata ATGATACCGCAGAAATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Arabidopsis_lyrata ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGCATAA Alyssum_alyssoides ATGATACCGGAAAAGTGGACGCCGCCGTGTGGGAATCAGTGCACGCACAA Arabidopsis_thaliana ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGAATAA Barbarea_vulgaris ATGATACCGCAGCGATGGACGCCGCCGTGTGGGAGTCAATGCACGCACAA Brassica_rapa ATGATACCGCAGCAATGGACGCCACCGTGTGGGAGTCAATGCACGCACAA Aethionema_subulatum ATGATACCGCAACAATGGACGTCGCCGTGTGGGAGTCAATGCACGCAAAA Physaria_newberryi ATGATACCGCATCAATGGACGCCTCCGTGTGGAAATCAATGTACGCATAA Boechera_canadensis ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTAAATGCACCCATAA Turritis_glabra ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGCATAA Cleome_serrulata ATGATACCGCAACAATGGTCGTCGCCGTGCAGAAACGAATGCACTCACAA Sisymbrium_officinale ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACACACAA Rorippa_sylvestris ATGATACCGCAGCGATGGACGCCGGCGTGTGGGAGTCAATGCACGCATAA Aethionema_grandiflorum ATGATACCGCAACAATGGACGTCGCCGTGTGGGAGTCAATGCACGCAAAA Camelina_sativa ---------AGAGAGATGATACCGCCGTGTGGGAAAAAGTGCACGCATAC Cardamine_pensylvanica ATGATACCGCAGCGATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Chorispora_bungeana ATGATTCCGCAGGAATGGACGCCGCCGTGCGGGAATCAGTGCACGCACAA Capsella_rubella ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGCAAAA Catolobus_pendulus ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCAAATGCACGCATAA Hesperis_matronalis ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTGAATGCACGCATAA Coincya_monensis ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Erysimum_cheiranthoides ATGATACCGCAACAATGGACGCCGCCTTGTGGGAGTAAATGCACGCATAA Brassica_nigra ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Berteroa_incana ATGATATCGGAAAAATGGACACCGCCGTGTGGGAATCAATGCACGCATAA Cakile_maritima ATGATACCGCAGCAATGGACGCGGCCGTGTGGGAGTCAATGCACGCATAA Hirschfeldia_incana ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Raphanus_raphanistrum ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Lepidium_campestre ATGATACCGCAGCAATGGACACCGCCATGTGGGAGTCAATGCACGCATAA Lunaria_annua ATGATACCCCAGCAGTGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Lepidium_didymum ATGATACCGCAGAAATGGACACCGCCATGTGGGAGTGAATGCACGCATAA Eutrema_salsugineum ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGCCAATGCACGCAGAA Thlaspi_arvense ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Schrenkiella_parvula ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCAAAA Smelowskia_tibetica ATGATACCACAGCAATGGACGCCGCCGTGTGGGAAACAATGCACGCATAA Thlaspi_alliaceum ATGATACCGCAGCAATGGACGCCGCCGTGTGGGAGTCAATGCACGCATAA Alliaria_petiolata GTATGCAGCTCTTATGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Arabidopsis_lyrata GTACTCAGCTTTTACGCAGCTTCCATGGAGAGTGTTCTGCAAAAAGGGAT Alyssum_alyssoides GTATGCGGCTCTTTTGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGCT Arabidopsis_thaliana GTACTCAGCATTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGAT Barbarea_vulgaris GTATGCAGCTATTACGCAGCTTCCATGGAGAGTCTTCTGCAAAAAGGGAT Brassica_rapa GTATGCAGCTCTTACGCAGATTCCATGGAGAGTATTCTGCAAAAAGGGAT Aethionema_subulatum ATATGCAGCTCTTATGCAGATTCCATGGAGAGTATTCTGCAAAAAGGGAT Physaria_newberryi GTATGCAGCTCTTACCCAGATTCCGTGGAGAGTATTCTGCAAAAAGGGAT Boechera_canadensis GTATTCAGCTTTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGAT Turritis_glabra GTATTCAGCTTTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGAT Cleome_serrulata ATACGCAGCTCTGACCCAGATTCCATGGAGAGTATTCTGCAAAAAAGGCT Sisymbrium_officinale GTATGCAGCTCTGATGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Rorippa_sylvestris GTATGCAGCTATTACGCAGCTTCCATGGAGAGTCTTCTGCAAAAAGGGAT Aethionema_grandiflorum ATATGCAGCTCTTATGCAGATTCCATGGAGAGTATTCTGCAAAAAGGGAT Camelina_sativa GTATTCAGCGTTTACGCAGATTCCATGGAGAGTATTCTGCAAAAAGGGTT Cardamine_pensylvanica GTATGCAGCTCTTACGCAGCTTCCGTGGAGAGTCTTCTGCAAAAAGGGAT Chorispora_bungeana GTATGCAGCTCTTATGCAGATTCCATGGAGAGTATTCTGCAAAAAGGGAT Capsella_rubella GTACTCAGCTTTTACGCAGATTGCATGGAGAGTATTCTGCAAAAAGGGAT Catolobus_pendulus GTATTCAGCTTTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGAT Hesperis_matronalis ATACGCAGCTCTTACGCAGATTCCATGGAGAGTATTCTGCAAAAAGGGAT Coincya_monensis GTATGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Erysimum_cheiranthoides GTATTCAGCTTTTACGCAGCTTCCATGGAGAGTATTCTGCAAAAAGGGAT Brassica_nigra GTACGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Berteroa_incana GTACGCGGCGCTTTTGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Cakile_maritima GTATGCAGCTCTTACGCAGATTCCTTGGAGAGTATTCTGCAAAAAGGGAT Hirschfeldia_incana GTATGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Raphanus_raphanistrum GTATGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Lepidium_campestre GTTTGCATCTCTTACGCAGATTCCGTGGAGAATATTCTGCAAAAAGGGAT Lunaria_annua GTATGCAGCTCTTATGCAGATTCCATGGAGAGTATTCTGTAAAAAGGGAT Lepidium_didymum GTTTGCATCTGTTATGCAGATTCCTTGGAGAATATTCTGCAAAAAGGGAT Eutrema_salsugineum GTATGCAGCACTTATGCAGATTCCATGGAGAGTTTTCTGCAAAAAGGGAT Thlaspi_arvense GTATGCAGCTCTTATGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Schrenkiella_parvula GTATGCAGCTCTTATGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Smelowskia_tibetica GTATGCAGCTCTTACGCAGATTCCGTGGAGAGTATTCTGCAAAAAGGGAT Thlaspi_alliaceum GTATGCAGCTCTTACGCAGATTCCATGGAGAGTGTTCTGCAAAAAGGGAT Alliaria_petiolata GTGATGCCGATAGTGACTCATGGGAAGATTGTGTATCAGACTGCAGTGAG Arabidopsis_lyrata GTGATGCCGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Alyssum_alyssoides GTGATGCGGATGGTGACAACTGGGAAGAATGTGTAGCAGAGTGCAGTGAG Arabidopsis_thaliana GTGATGCCGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Barbarea_vulgaris GTGATACTGATAGTGACTCATGGGAAGATTGTGTAGCAGACTGCAGTGAG Brassica_rapa GTGATGCCGATAGTGACTCATGGGAAGATTGTGTGTCAGATTGCAGTGAG Aethionema_subulatum GTGATGGCGATGGTGATACGTGGGAAGAATGTATAGCAGACTGCAGTGAG Physaria_newberryi GTGATACTGATAGTGACTCATGGGAAGATTGTGTAGCAGACTGTAGTGAG Boechera_canadensis GTGATGCCGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Turritis_glabra GTGATACCGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Cleome_serrulata GTGATGCAGATGGTGACACATGGGAAGAATGTGTAGCGGAATGCAACGAG Sisymbrium_officinale GTGATGCCGATAGTGACTCATGGGAAGATTGTGTATCAGATTGCAGTGAG Rorippa_sylvestris GTGATACTGATAGTGACTCATGGGAAGATTGTGTAGCAGACTGCAGTGAA Aethionema_grandiflorum GTGATGGCGATGGTGACACGTGGGAAGAATGTATAGCAGACTGCAGTGAG Camelina_sativa GTGATGCCGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Cardamine_pensylvanica GTGATACTGATAGTGACTCATGGGAAGATTGTGTAGCAGACTGCAGTGAA Chorispora_bungeana GTGATGCCGATAGTGACACGTGGGAAGACTGTGTAGTTGATTGCAGTGAG Capsella_rubella GTGATGCTGACAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Catolobus_pendulus GTGACGCCGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Hesperis_matronalis GTGATGCAGATGGTGACACGTGGGAAGAATGTGTAGCAGAGTGTAGTGAG Coincya_monensis GTGATGCCGATAGTGACTCATGGGAAGATTGTGTATCAGATTGCAGTGAG Erysimum_cheiranthoides GTGATGCTGATAGTGACTCATGGGAAGATTGTGTAGGAGACTGCAGTGAA Brassica_nigra GTGATGCCGATAGTGACTCATGGGAAGATTGTGTATCAGATTGCAGTGAG Berteroa_incana GTGATGCCGATAGTGACAACTGGGAAGAATGTGTAGCAGAGTGCAGTGAG Cakile_maritima GTGATGCTGATAGTGACTCATGGGAAGATTGTGTGTCAGATTGCAGTGAG Hirschfeldia_incana GTGATGCCGATAGTGACTCATGGGAAGATTGTGTATCAGATTGCAGTGAG Raphanus_raphanistrum GTGATGCCGATAGTGACTCATGGGAAGATTGTGTATCAGATTGCAGTGAG Lepidium_campestre GTGATACCGATAGTGACTCATGGGAAGATTGTGTAGCAGCCTGCAGTGAG Lunaria_annua GTGATGCCAATAGTGACACATGGGAAGATTGTGTAGCAGATTGCAGTGAG Lepidium_didymum GTGATGCCGATTGTGACTCATGGGAAGATTGTGTAGCAGCCTGCAGTGAG Eutrema_salsugineum GTGACGCCGATAGTGACACATGGGAAGATTGTATTGTAGCCTGCAGTGAG Thlaspi_arvense GTGATGCTGATAGTGATACATTTGAAGATTGTGTATCAGACTGCAGCGAG Schrenkiella_parvula GTGATGCCGATAGTGACACATGGGAAGATTGTGTATCAGATTGCAGTGAG Smelowskia_tibetica GTGATACTGATAGTGACTCATGGGAAGATTGTGTAGCAGACTGCAGTGAA Thlaspi_alliaceum GTGACGCGGATAGTGACTCATTTGAAGATTGTGTATCAGACTGCAGCGAG Alliaria_petiolata ATATGCTATAAAGATCCTGTGCTAAAAGACCGACAATGGAGTGCATACAT Arabidopsis_lyrata ATATGCTACAAAGATCCTGTGCTAAAAGACAGACCATGGACTGCAGTTAT Alyssum_alyssoides ATATGCTATAAGGACCCTGTGCTAAAAGACCAACAATGGAGTGCATTTAT Arabidopsis_thaliana ATTTGCTACAAAGATCCTGTGCTAAAAGACAGACCATGGACTGCTGTTAT Barbarea_vulgaris ATATGCTACAAAGATCCTGTGATAAAAGACCGGGAATGGAGTAAATACAT Brassica_rapa ATATGCTACAAAGATCCTGTGCTAAAAGACCGACAATGGAGTGCTTATAT Aethionema_subulatum CTATGCTATAAAGATCCTGTACTTAAAGACCGACAATGGAGCGCATATAT Physaria_newberryi ATATGCTACAAAGATCCTGTGCTAAAAGACCGAGAATGGACTGCATATAT Boechera_canadensis ATATGCTACAAAGATCCTGTGGTAAAAGACCGACCATGGACTGCAGTTAT Turritis_glabra ATATGCTACAAAGATCCTGTGGTAAAAGACCGACCTTGGACTGCAGTTAT Cleome_serrulata ATATGCTACAAAGATCCCGTGTTAAAGGATCGTCAATGGAGTGCTTATAT Sisymbrium_officinale ATATGCTACAAAGATCCTGTGCTAAAAGACCGACAATGGAGTGCATATAT Rorippa_sylvestris ATATGCTACAAAGATCCTGTTATAAAAGACCGGCAATGGAGTAAATATAT Aethionema_grandiflorum CTATGCTACAAAGATCCTGTACTAAAAGACCGGCAATGGAGCGCATATAT Camelina_sativa ATATGCTACAAAGATCCTGTGGTAAAAGACCGACCATGGACTGCAGTTAT Cardamine_pensylvanica ATATGCTACAAAGACCCTGTTATAAAAGACCGTGAATGGAGTAAATACAT Chorispora_bungeana ATATGCTACAAAGATCCTGTGCTAAAAGATCGACAATGGAGCGCATATAT Capsella_rubella ATATGCTACAAAGATCCTGTGGTAAAAGACATACCATGGACTGCTGTTAT Catolobus_pendulus ATATGCTACAAAGATCCTGTGGTAAAAGACCGACCATGGACTGCAGTTAT Hesperis_matronalis ATATGCTACAAAGATCCTGTGCTAAAAGACCAACAATGGAGCGCATATAT Coincya_monensis ATATGCTATAAAGACCCTGTGCTAAAAGACCAACAATGGAGTGCATTTAT Erysimum_cheiranthoides ATATGCTACAAAGATCCTGTGATAAAAGACAGACCATGGAGTGCAGTTAT Brassica_nigra ATATGCTACAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCTTATAT Berteroa_incana ATATGCTATAAGGATCCTGTGCTAAAAGACCAACAATGGAGTGCATATAT Cakile_maritima ATATGCTACAAAGATCCTGTGCTAAAAGACAGGCAATGGAGTGCCTACAT Hirschfeldia_incana ATATGCTACAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCATACAT Raphanus_raphanistrum ATATGCTACAAAGACCCTGTGCTAAAAGACCGACAATGGAGTGCTTATAT Lepidium_campestre ATATGCTACAAAGATCCTGTGCTAAAAGATCGAGAATGGACTGCATATAT Lunaria_annua ATATGCTACAAAGATCCTGTGTTAAAAGACCAACAATGGAGTGCATATAT Lepidium_didymum ATATGCTACAAAGATCCTGTGCTAAAAGATCGAGAATGGACTGCATATAT Eutrema_salsugineum ATATGCTACAAAGATCCTGTGCTAAAGGACCGACAATGGAGTGCATATAT Thlaspi_arvense ATATGCTATAAAGATCCTGTGCTAAAAGACCGACAATGGAGTGCATACAT Schrenkiella_parvula ATATGCTACAAAGATCCTGTGCTAAAAGACCGACAATGGAGTGCATATAT Smelowskia_tibetica ATATGCTACAAAGATCCTGTGCTAAAAGACCGAGAATGGACCGCTTATAT Thlaspi_alliaceum ATATGCTATAAAGATCCTGTGCTAAAAGACCGACAATGGAGTGCATACAT Alliaria_petiolata AGATCGGTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Arabidopsis_lyrata AGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAATGCTTTCACGCAT Alyssum_alyssoides AGACCGTTCTCCTGGATCTGCAAGCTACTCTGAGGATTGCTTTCACGCGT Arabidopsis_thaliana AGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAATGCTTTCACGCAT Barbarea_vulgaris AGATCGTTCTCCTGGAGCTGCTAGCTGCTCTGAGGATTGCTTTCACGCGT Brassica_rapa AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCATGCAT Aethionema_subulatum AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAAGAATGTTTTCACGCAT Physaria_newberryi TGATCGTTCTCCTGGAGCTGCCAGATACTCTGAGGAATGCTTTCACGCAT Boechera_canadensis AGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAATGTTTTCACGCAT Turritis_glabra AGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAATGCTTTCACGCGT Cleome_serrulata AGATCGGTCTCCGGGATCCGCTAGCTACTCTGAAGAATGCTTTCACGCTT Sisymbrium_officinale AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Rorippa_sylvestris AGATCGTTCTCCTGGAGCTGCCAGCTGCTCTGAGGATTGCTTTCATGCGT Aethionema_grandiflorum AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAAGAATGTTTTCACGCAT Camelina_sativa GGATCGTTCTCCTGGAGATGCCAAATACTCTGAGGAATGCTTTCACGCAT Cardamine_pensylvanica AGATCGTTCTCCTGGAGCTGCCAGCTGCTCTGAGGATTGCTTCCACGCGT Chorispora_bungeana AGATCGTTCTCCTGGAGCCGAGCGCTACTCTGAGAAATGCTTTCACGCAT Capsella_rubella AGATCGTTCCCCTGGAGATGCCAAATACTCTGAGGAATGTTTTCACGCAT Catolobus_pendulus AGATCGTTCCCCTGGAGATGCCAAATACTCTGAGGAATGTTTTCACGCAT Hesperis_matronalis AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGAAATGCTTTCACGCAT Coincya_monensis AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Erysimum_cheiranthoides AGATCGTTCACCTGGAGATGCCAAATACTCTGAGGAATGCTTTCACGCGT Brassica_nigra AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Berteroa_incana TGACCGTTCTCCTGGAGCTGCTGGTTACTCTGAGGATTGCTTTCACGCGT Cakile_maritima AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCAT Hirschfeldia_incana CGATCGTTCTCCTGGAGCTGCCAGCTATTCTGAGGAATGCTTTCACGCGT Raphanus_raphanistrum AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Lepidium_campestre AGATCGTTCTCCTGGAGCTGCCGGCTACTCTGAGAATTGCTTTCACGCAT Lunaria_annua AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCTT Lepidium_didymum AGATCGTTCTCCTGGAGCTGCCAGCTACTCTCAGGATTGCTTTAAAGCAT Eutrema_salsugineum TGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Thlaspi_arvense AGATCGTTCTCCTGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Schrenkiella_parvula AGATCGTTCTCCCGGAGCTGCCAGCTACTCTGAGGAATGCTTTCACGCGT Smelowskia_tibetica AGATCGTTCTCCTGGATCTGCCAGATACTCTGAGGAATGCTTTCACGCGT Thlaspi_alliaceum AGATCGTTCTCCTGGAGCTGCCAGCTACTCAGAGGAATGCTTTCACGCGT Alliaria_petiolata GTGTTGCAGGCTGTGGTTACAAGTTTGAAGTTGAATCTGAGGAAGTCAAT Arabidopsis_lyrata GTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTCAAT Alyssum_alyssoides GTGTTTCAGGCTGTGGTTACAAGTTTGATGTCAAATCTGAGGAAGTCGAT Arabidopsis_thaliana GTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTCAAT Barbarea_vulgaris GTGTTGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGGAAGTCAAT Brassica_rapa GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAATCTGAGGAAGTCAAT Aethionema_subulatum GTGTCTCAGGCTGCGGTTACAAATTTGAAGTTGATTCAGAGGAAGTTGCT Physaria_newberryi GTGTTGCAGGCTGTGGTTATAAGTTTGATGTTGAAGCTGGGACAGTGAAT Boechera_canadensis GTGTCGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTCAAT Turritis_glabra GTGTTGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGACAGTCAAT Cleome_serrulata GTGTTGCGGGTTGCGGGTATAAGTTTGAAGTTGAAACGGAGAAAGTTGAC Sisymbrium_officinale GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAATCTGAGGAAGTCGAT Rorippa_sylvestris GTGTCGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGGAAGTCAAT Aethionema_grandiflorum GTGTCTCAGGCTGCGGTTACAAATTTGAAGTTGATTCAGAGGAAGTTGCT Camelina_sativa GTGTTGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTCAAT Cardamine_pensylvanica GTGTCGCAGGCTGTGGTTACAAGTTTGATATTGAAGCTGAGGAAGTCAAT Chorispora_bungeana GTGTTGCAGGCTGCGGTTACAAGTTTGATGTCGAATCTGAGGAAGTCGAT Capsella_rubella GTGTTGCTGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGAAAGTCAAT Catolobus_pendulus GTGTTGCTGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGAAAGTCAAT Hesperis_matronalis GTGTTTCAGGCTGCGGTTACAAGTTTGATGTTGACTCTGAGGAAGTCAGT Coincya_monensis GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAGTCGGATGAGGTCGAT Erysimum_cheiranthoides GTGTTGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGATAGTCGAT Brassica_nigra GTGTTGCAGGCTGTGGTTACAAGTTTGAAGTTGAGTCGGAGGAAGTCGAT Berteroa_incana GTGTTTCAGGCTGTGGTTACAAGTTTGATGTCAAATCCGAGGAAGTTGAG Cakile_maritima GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAATCAGAGGAAGTCAAT Hirschfeldia_incana GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAGTCGGAGGAAGTCGAT Raphanus_raphanistrum GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAGTCGGGGGAAGTCGAT Lepidium_campestre GTGTAGCAGGCTGTGGTTACAAGTTTGATGTTGAAGCTGAGGAAGTCAAA Lunaria_annua GTGTCGCAGGCTGTGGTTACAAGTTTGATGTTGAATCTGAGGAAGTCGAT Lepidium_didymum GTGTCGCAGGCTGTGGTTACAAGTTTGATGTTGAAGATGAGGAAGTGAAG Eutrema_salsugineum GTATCTCAGGCTGTGGTTACAAGTTTGAAGTTGAATCTGAGGAAGTCAAG Thlaspi_arvense GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAATCTGAGGAAGTCAAT Schrenkiella_parvula GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTCGAATCTGAGGAAGTCAAT Smelowskia_tibetica GTGTCGCAGGCTGTGGTTACAAGTATGATGTTGATTCTGAGGAAGTCAAA Thlaspi_alliaceum GTGTCGCAGGCTGTGGTTACAAGTTTGAAGTTGAATCTGAGGAAGTCAAT Alliaria_petiolata AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACC Arabidopsis_lyrata AAGGTGAAACCAAAGAGACCTCCACCACCACCAAAGCCACAACCACCACC Alyssum_alyssoides AAAGCAAAGCCAAAGAGACCACCACCGCCACCAAAGCCGCAGCCACCACC Arabidopsis_thaliana AAGGTGAAACCAAAGAGACCTCCACCACCACCAAAGCCACAACCACCACC Barbarea_vulgaris AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCTCC Brassica_rapa AAGGTGAAACCAAAGAGACCACCACCACCGCCAAAGCCACAACCACCACC Aethionema_subulatum AAGGTGAAGCCAAAGAGACCACCACCACCGCCGAAGCTGCAACCACCACG Physaria_newberryi ACGGTGAAACCAAAGAGACCACCACCACCGCCA---CCACTACCAAAGCC Boechera_canadensis ACGGTGAAACCAAAGAGGCCACCACCACCACCAAAACCACAACCACCACC Turritis_glabra -------------------------------------------------- Cleome_serrulata AAAGTTAAGCCAAAGAGATCACCACCAATAACACCGCCAAAGCCAAAGCC Sisymbrium_officinale AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACC Rorippa_sylvestris AAGGTGAAACCTAAGAGACCACCACCACCACCAAAGCCACAACCACCTCC Aethionema_grandiflorum AAGGTGAAGCCAAAGAGACCACCACCACCGCCAAAGCTGCAACCACGACG Camelina_sativa AAGGTGAAACCAAAGAGACCTCCACCACCACCAAAGCCACAACCACCACC Cardamine_pensylvanica AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCT----- Chorispora_bungeana AAAATGAAGCCAAAGAGACCACCACAGCCACCAAAGCCGCAACCACAACC Capsella_rubella AAGGTGAAACCAATCAGACCACCACCACCACCAAAGCCACAACCAATACC Catolobus_pendulus AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACC Hesperis_matronalis AAAGCAAAGCCAAAGAGACCACCACCGCCACCAAAGCCACAACCACCACC Coincya_monensis AAGGTGAAACCAAAGAGACCACCACCGCCACCAAAGCCACAGCTACCGCC Erysimum_cheiranthoides AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACC Brassica_nigra AAGGTGAAACCAAAGAGACCACCACCGCCACCAAAGCCACAGCCACCACC Berteroa_incana ACAGTGAAGCCAAAAAGACCACCACCGCCACCAAAGCCGCAACCACCACC Cakile_maritima AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAGCCACCACC Hirschfeldia_incana AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAGCCACCACC Raphanus_raphanistrum AAGGTGAAACCAAAGAGACCACCGCCACCACCAAAGCCACAGCCACCACC Lepidium_campestre AAGGCGAAACCAAAGAGACCACCA------CCAAAGCCACAACCACCACC Lunaria_annua AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACC Lepidium_didymum AAGGCGAAACCAAAGAGACCACCACCACCACCGAAACCACAGCCACCACC Eutrema_salsugineum AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACC Thlaspi_arvense AAGGCGAAACCAAAGAGACCACCACCGCCACCAAAGCCACAACCACCACC Schrenkiella_parvula AAGGTGAAACCAAAGAGACCACCACCACCTCCAAAGCCACAACCACCACC Smelowskia_tibetica AAGGTGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACG Thlaspi_alliaceum AAGGCGAAACCAAAGAGACCACCACCACCACCAAAGCCACAACCACCACC Alliaria_petiolata ACGAGCTAAAAGACCAATGCAGTCTCCTACTGAGGACGTTCCTACAACTT Arabidopsis_lyrata ACCACCACAAAAACCAAAGCAGCCTCCTACTGAGGATGTTCCTGCAACTT Alyssum_alyssoides ACGGTCTCCACGGCCACCCAAGTCCCCAACTGAGGATGTTCCTACAACTT Arabidopsis_thaliana ACCACCACAAAAACCAATGCAGCCTCCTACTGAGGATGTTCTTGCAACTT Barbarea_vulgaris ACAGCCTCAAAGACCAATGCAGCCTCCAACTGAGGATGTTCCTGCAACTT Brassica_rapa ACGAGCTAAAGGACCAAAGCAGCCACCTAGTGAGGAGGTTCCTGGAACTT Aethionema_subulatum ACCATCTCAAGGACCAGTACCGGTTCCTGGGGAGGATGTTCCTGCAACTT Physaria_newberryi ACAACCTCAAAAGCCAATGCAGCTTCCTACTGAGGATGTTCCTACAACAT Boechera_canadensis ACGACCTCAAAAATCTATGCAGCCTCCTACTGAGGATGTTCCTGCAACTT Turritis_glabra -------------------------------------------------- Cleome_serrulata AAAGCCAAAAGCAAACCCGCCACTTCCTCCAGAGGATCTTCCTGCAATAT Sisymbrium_officinale ACGAGCTAAAGGACCAATGCAGCCTTCTACT---GATGTTCCTGAAACTT Rorippa_sylvestris ACAGCCTCAAAGACCAATGAAGCCTCCTACTGAGGATGTTCCTGGAACTT Aethionema_grandiflorum ACCATCTCAAGGACCAGTACCGGTTCCTGGGGAGGATGTTCCTGCAACTT Camelina_sativa AAGGTCTCAAAAACCAATGCAGCCTTCTACTGAGGATGTTCTTGCAACAT Cardamine_pensylvanica -------CAAAGACCAATGCAGCCTCCTACTGAGGATGTTCCAACAACTT Chorispora_bungeana ACGGGCTCAACCACCGATGCAGTCTCCTACTGAGGATGTTCCTGCAACTT Capsella_rubella ACGATCTCAAAGACCAATGAAGTCTCCTAGTGAGGATGTTCCAGCATCTT Catolobus_pendulus ACGACCTCAAAGACCAATGCAGTCTCCTACTGAGGATGTTCCTGCAACTT Hesperis_matronalis ACGGGCTCAACGACCAACGCAGTCTCCTGCTGAGGATGTTCCTGCAACTT Coincya_monensis ACGAGCTAAAAGACCAGTGCAACCACCTAGTGAGGATGTTCCTGGAACGT Erysimum_cheiranthoides ACGACCTCAAGGACCAACGCAGCCTCCTGCTGAGGATGTTCCTGCAACTT Brassica_nigra ACGAGCTAAAAGACCAATGCAACCATCTAGTGAAGATGTTCCTGGAACGT Berteroa_incana ACGGTCTCCACGACCACCCAAGTCTCCTACTGAGGAGGTTCCTACAACTT Cakile_maritima ACGAGATAAGAGACCAATGCAGCCGCCTTCTGATGAGGAATTTCCTGCAA Hirschfeldia_incana ACGAGCTAAAAGGCCAATGCAACCACCTACTGAGGATATTCCTGAAACGT Raphanus_raphanistrum GCGAGCTAAAAGACCAATGCAACCACCTAGTGAGGATGTTCCTGGAACGT Lepidium_campestre ACGACCTCAAAAACCAATGCAGCCTTCTACTGAGGATGTTCCTGGAACTT Lunaria_annua ACGAGCTAAAGGACCAATGCAGTCTCCTACTGAGGATGTTCCTGCAACTT Lepidium_didymum ACGACCTCAAAAACCAATGCACCCTTCTACTGAGGATGTTCCTGGAACTT Eutrema_salsugineum ACGAGCTAAAACACCAATGCAGTCTCCTTCGGAGGATGTTCCTACAACTT Thlaspi_arvense ACGAGCTAAAAGACCAATGCAGTCTCCTACTGAGGATGTTCCTACAACTT Schrenkiella_parvula ACAAGCTCAAAAGCCGATGCAGCCTCCTACTGAGGATGTTCCTACAACTT Smelowskia_tibetica ACGACCTCAGAGACAAATGCAGGCTTCTACTGAGGATGTTCCTGCAACTT Thlaspi_alliaceum ACGAGCTAAAAGACCAATGCAGTCTCCTACTGAGGATGTTCCTACAACTT Alliaria_petiolata CTGCT Arabidopsis_lyrata CCGCT Alyssum_alyssoides CTGCT Arabidopsis_thaliana CCGCT Barbarea_vulgaris CCGCT Brassica_rapa CAGCT Aethionema_subulatum CCGCT Physaria_newberryi CCGCT Boechera_canadensis CCGCT Turritis_glabra ----- Cleome_serrulata CAGCT Sisymbrium_officinale CTGCG Rorippa_sylvestris CCGCT Aethionema_grandiflorum CCGCT Camelina_sativa CAGCT Cardamine_pensylvanica CTGCC Chorispora_bungeana CTGCT Capsella_rubella CCGCT Catolobus_pendulus CCGCT Hesperis_matronalis CTGCT Coincya_monensis CTGCT Erysimum_cheiranthoides CCGCT Brassica_nigra CAGCT Berteroa_incana CTGCT Cakile_maritima GTTCT Hirschfeldia_incana CTGCT Raphanus_raphanistrum CTGCT Lepidium_campestre CTGCT Lunaria_annua CTGCT Lepidium_didymum CTGCT Eutrema_salsugineum CTGCC Thlaspi_arvense CTGCT Schrenkiella_parvula CTGCT Smelowskia_tibetica CCGCT Thlaspi_alliaceum CTGCT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 405; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 405; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 405; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1441512649536; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4253739716576914097; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2899525805660204862; mqVersion 301; checksumv 0 3 3551260658 null getNumChars 405 numChars 405 getNumTaxa 35 numTaxa 35 short true bits 15 states 15 sumSquaresStatesOnly 274293.0 sumSquares 274293.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2899525805660204862 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;