#NEXUS [written Sun Sep 06 12:13:55 CST 2015 by Mesquite version 3.01 (build 658) at TOSHIBA/192.168.0.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=38; TAXLABELS Alliaria_petiolata Arabidopsis_lyrata Alyssum_alyssoides Arabidopsis_thaliana Barbarea_vulgaris Aethionema_subulatum Iberis_gibraltarica Physaria_newberryi Boechera_canadensis Turritis_glabra Cleome_serrulata Sisymbrium_officinale Erysimum_cheiri Aethionema_grandiflorum Cardamine_pensylvanica Chorispora_bungeana Capsella_rubella Catolobus_pendulus Hesperis_matronalis Coincya_monensis Erysimum_cheiranthoides Brassica_nigra Rorippa_globosa Berteroa_incana Cakile_maritima Hirschfeldia_incana Raphanus_raphanistrum Iberis_sempervirens Lepidium_campestre Lunaria_annua Pachycladon_fastigiatum Lepidium_didymum Rorippa_indica Eutrema_salsugineum Thlaspi_arvense Schrenkiella_parvula Smelowskia_tibetica Thlaspi_alliaceum ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=483; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Alliaria_petiolata TTGCCGTCTTGGCTGACAAAGATTACCGCGAAAATTCGTGAAAGCTCGGG Arabidopsis_lyrata TTACCTTCCTGGCTGACAAAGATTACAGCGAAAATTTGTGAAAGCTCGGG Alyssum_alyssoides TTACCTTCTTGGCTAACAAAGATTACAGAAAAAATTCATGAAAGCTCGGG Arabidopsis_thaliana ATGCCTCCCTGGCTGACAAAGATAACAGCGGAAATTCATGAAAGCTCGGG Barbarea_vulgaris TTACCTTCTTGGCTAATAAAGATTACAGCAAAAATTCATGAAAGCTCGGG Aethionema_subulatum CTACCTTACTGGCTAACAAAGATTACCTCAAAGATTTATGAAAGCACTGC Iberis_gibraltarica TTACCTTATTGGTTAACAAAGATTACATCAAAAATCCACGAAAGCTCGAA Physaria_newberryi TTGCCTTCCTGGCTGACAAAGATTACATCAAAAATTAATGAAACCTCGGG Boechera_canadensis -------------------------------------------------- Turritis_glabra TTGCCTTCCTGGCTGACAAAGATTACAGCGAAAATTCATGAAAGCTCGGG Cleome_serrulata GTGCCGTCTTGGCTGACAAAGATTACATCGAAGATCTATGAAAGCTCCGG Sisymbrium_officinale TTGCCGTCTTGGTTGACCAAGATTACAGCGAAAATTCATGAAAGCTCGGG Erysimum_cheiri TTGCCTTCCTGGCTGACAAAGATTACAGCGAAAATTCATGAAAGCTCGGG Aethionema_grandiflorum CTACCTTATTGGCTGACAAAGATTACCTCAAAGATTTATGAAAGCACTGC Cardamine_pensylvanica TTGCCTTCTTGGCTGATAAAGATTACAGCAAAAATTCATGAAAGCTCGGG Chorispora_bungeana TTACCTTCTTGGCTGATAAAGATTACCGAAAAAATGCATAAAAGCTCGGG Capsella_rubella TTGCCTTCCTGGCTGACAAAGGTTACAACGAAAATTCATGGAAGCTCGGG Catolobus_pendulus TTGCCTTCCTGGCTGAAAAAGGTTACAACGAAAATTCATGAAAGATCGGG Hesperis_matronalis CTGCCTTCTTGGCTGATAAAGATTACAGCAAAAATCTACAAAAGCTCGGG Coincya_monensis -------------------------------------------------- Erysimum_cheiranthoides TTGCCTTCCTGGCTGACAAAGATTACAGCAAAGATTCATGAAAGCTCGGG Brassica_nigra TTGCCTTCTTGGCTGACAAAGATCACCGAGAAAATTCATGAAAGCTCGGG Rorippa_globosa TTACCTTCTTGGCTGATAAAGATTACAGCAAAAATTCGTGAAAGCTCGGG Berteroa_incana TTGCCATCTTGGCTGACAAAGATTACTGCAAAGATTCACGAAAGCTCGGG Cakile_maritima TTGCCTTCTTGGCTGACAAATATTACCACGAAAATTCATGATAGCTCGGG Hirschfeldia_incana TTGCCTTCTTGGCTGACAAAGATTACCGAGAAAATTCATGAAAGCTCTGG Raphanus_raphanistrum TTGCCTTCTTGGCTGACAAAGATTACCGAGAAAATTAATGAAAGCTCTGG Iberis_sempervirens TTACCTTCTTGGTTAACAAAGATTACAACAAAAATTCACGAAAGCTCGAG Lepidium_campestre TTGCCTTCCTGGCTGACAAAGATAACAGCGAAGATTCATGATCACTCGGG Lunaria_annua TTGCCTTCTTGGCTGACAAAGATTACTGCGAAAATTCATGAAAGCTTGGG Pachycladon_fastigiatum TTGCCTTCCTGGCTGACAAAGGTTACAACGAAAATTCATGAAAGCTCGTG Lepidium_didymum -----------------------AACAGAGAAGATTCGCGATCGCTTGGG Rorippa_indica CAATCATCTTGGCTGATAAAGATTACAACAAAAATTCGTGAAAGCTCGGG Eutrema_salsugineum TTGCCTTCTTGGCTGACAAAGATTACAGCAAAAATTCGTGAAAGCTCGGG Thlaspi_arvense TTGCCGTCTTGGCTGACAAAGATTACAGCGAAAATTCATGAAAGCTCGGG Schrenkiella_parvula TTGCCTTCTTGGCTGACTAAGATTACTGCGAAAATTCATGAAAGCTCGGG Smelowskia_tibetica TTGCCTTCCTGGCTGACAAAGATTACATCGAAAATTCATGAAAGCTCGGG Thlaspi_alliaceum TTGCCGTCTTGGCTGACAAAGATTACGGCGAAAATTCATGAAAGCTCGGG Alliaria_petiolata TCTTTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATATCATCCTG Arabidopsis_lyrata TCTGTTTCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTA Alyssum_alyssoides TCTGTTCCCTTCTGCTATCAATCATGTCCTCATCAATGAATATCATCCTG Arabidopsis_thaliana TCTGTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTG Barbarea_vulgaris TCTGTTCCCTTCTGCTATCAATCATGTCCTCATCAATGAATACCATCCTG Aethionema_subulatum TCTGTTCCCTTCTGCTATCAATCATGTCCTCATTAATGAATACCATCCTG Iberis_gibraltarica TCTTTTCCCTTCTGCTATAAACCATGTACTCATCAATGAATACAATCCTG Physaria_newberryi TCTGTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTC Boechera_canadensis -------------------------------------------------- Turritis_glabra CTTGTTCCCTTCTGCTATAAATCATGTCCTGATCAATGAATACCATCCTG Cleome_serrulata TTTGTTCTCTTCTGCCATTAATCATGTTCTCATCAATGAGTATCATCCTG Sisymbrium_officinale TCTCTTCCCTTCTGCTATTAATCATGTCCTGATCAATGAATACCATCCTG Erysimum_cheiri CTTGTTCCCTTCTGCTATAAATCATGTCCTCATCAACGAATACCATCCTG Aethionema_grandiflorum TCTGTTCCCTTCTGCTATCAACCATGTCCTCATCAATGAATACCATCCTG Cardamine_pensylvanica TCTATTCCCTTCTGCTATCAATCATGTCCTCATCAATGAATACCATCCTG Chorispora_bungeana TCTATATCCTTCTGCCATCAATCATGTCCTCATCAATGAATACCATCCTG Capsella_rubella TCTCTTCCCTTCTGCTATAAACCATGTCCTCATCAATGAATACCATCCTG Catolobus_pendulus TTTGTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTG Hesperis_matronalis TTTATTCCCTTCTGCTATAAATCATGTCCTCATCAATGAGTACCATCCTG Coincya_monensis -------------GCTATAAACCATGTCCTCATCAATGAATATCATCCTG Erysimum_cheiranthoides TTTGTTCCCTTCTGCTATAAATCATGTCCTCATCAACGAATACCATCCTG Brassica_nigra TCTGTTCCCTTCTGCTATAAACCATGTCCTCATCAATGAATACCATCCTG Rorippa_globosa TCTGTTTCCTTCTGCTATCAATCATGTCCTCATCAATGAATACCATCCTG Berteroa_incana TCTGTTCCCTTCTGATATCAATCATGTCCTCATCAATGAATACCATCCTG Cakile_maritima TCTTTTTCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTG Hirschfeldia_incana TCTGTTCCCTTCTTCTATAAATCATGTCCTCATCAATGAATACCACCCTG Raphanus_raphanistrum TCTTTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTG Iberis_sempervirens TCTTTTCCCTTCTGCTATAAACCATGTCCTCATCAATGAATATCATCCTG Lepidium_campestre TCTGTTCCCTTCTGCTATAAATCATGTTCTCATCAATGAATACCATCCTG Lunaria_annua TCTGTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTG Pachycladon_fastigiatum TCTGTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATATCATCCTG Lepidium_didymum TCTGTTCCCATCTGCTATAAATCATGTTCTTATCAATGAATATCATCCAG Rorippa_indica TCTGTTTCCTTCTGCTATCAATCATGCCCTCATCAATGAATACCATCTTG Eutrema_salsugineum TCTTTTCCCTTCTGCTATCAATCATGTCCTCATCAATGAATATCATCCTG Thlaspi_arvense TCTTTTCCCTGCTGCTATCAATCATGTCCTCATCAACGAATACCATCCTG Schrenkiella_parvula TCTTTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTG Smelowskia_tibetica TCTCTTCCCTTCTGCCATAAATCATGTCCTCATCAATGAATACCATCCTG Thlaspi_alliaceum TCTTTTCTCTTCTGCTATCAATCATGTCCTCATCAACGAATACCATCCTG Alliaria_petiolata ACCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Arabidopsis_lyrata ACCAAGGGATAATGGCGCACCAAGATGGACCTGCTTATTTTCCTGTTGTA Alyssum_alyssoides ACCAAGGCATAATGCCACACCAAGATGGACCGGCTTATTTTCCTGTTGTA Arabidopsis_thaliana ACCAAGGGATTATGCCGCATCAAGATGGACCCGCTTACTTTCCTGTTGTA Barbarea_vulgaris ACCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Aethionema_subulatum ACCAAGGCATAATGCCACATCAAGATGGACCAGCTTATTTTCCTGTTGTA Iberis_gibraltarica ATCAAGGAATAATGCCGCATCAAGATGGACCTGCTTATTTCCCTGTTGTT Physaria_newberryi ACCAAGGGATAATGCCACACCAAGATGGACCAGCTTATTTTCCTGTTGTA Boechera_canadensis -----------CAGCCACATCAAGACGGACCCACTTATTTCTCAGTTGTA Turritis_glabra ACCAAGGGATAATGCCACACCAGGACGGACCCGCTTATTTCCCTGTTGTA Cleome_serrulata ACCAAGGGATAATGCCACACCAGGATGGACCGGCTTATTTTCCGGTTGTA Sisymbrium_officinale ATCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Erysimum_cheiri ACCAAGGGATAATGCCGCACCAAGATGGACCTGCTTATTATCCTGTGGTG Aethionema_grandiflorum ACCAAGGCATAATGCCACATCAAGATGGACCAGCTTATTTTCCTGTTGTA Cardamine_pensylvanica ACCAAGGGATAATGCCACACCAAGATGGACCTGCTTATTTTCCTGTTGTA Chorispora_bungeana ACCAAGGGATCATGCCGCACCAAGATGGACCCGCTTATTTCCCTGTTGTA Capsella_rubella ACCAAGGGATAATGCCGCACCAGGATGGACCTGCTTATTTCCCTGTTGTA Catolobus_pendulus ACCAAGGGATAATGCCGCACCAGGATGGACCTGCTTATTTCCCTGTTGTA Hesperis_matronalis ACCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Coincya_monensis ACCAAGGGATAATGCCACACCAAGATGGACCCGCTTATTTTCCTGTTGTA Erysimum_cheiranthoides ACCAAGGGATAATGCCGCACCAAGATGGACCTGCTTATTTTCCTGTGGTA Brassica_nigra ACCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTCCCTGTTGTA Rorippa_globosa ACCAAGGGATAATGCCACACCAAGATGGACCAGCTTATTTTCCTGTTGTA Berteroa_incana ACCAAGGGATAATGCCGCACCAAGATGGACCTGCTTATTTTCCTGTTGTA Cakile_maritima ACCAAGGGATAATGCCGCACCAAGATGGACCAGCTTATTTCCCAGTTGTA Hirschfeldia_incana ACCAAGGGATAATGCCACACCAAGATGGACCTGCTTATTTTCCTGTTGTA Raphanus_raphanistrum ACCAAGGGATAATGCCGCACCAAGATGGACCAGCTTATTTTCCTGTTGTA Iberis_sempervirens ATCAAGGAATAATGCCACATCAAGATGGACCAGCTTATTTCCCTGTTGTA Lepidium_campestre ACCAAGGAATAATGCCACACCAAGATGGACCCGCTTATTTTCCTGTTGTA Lunaria_annua ACCAAGGGATAATGCCGCACCAAGATGGACCTGCTTATTTTCCTGTTGTA Pachycladon_fastigiatum ACCAAGGGATAATGCCACACCAAGATGGACCCGCGTATTTC--------- Lepidium_didymum ACCAAGGGATAATGCCTCACCAAGATGGACCCGCATATTTTCCTGTTGTA Rorippa_indica ACCAAGGGATAATGCCACACCAAGATGGACCCGCTTATTTTCCTGTTGTA Eutrema_salsugineum ACCAAGGGATAATGCCACACCAAGATGGACCCGCTTATTTTCCTGTTGTA Thlaspi_arvense ACCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Schrenkiella_parvula ACCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Smelowskia_tibetica ACCAAGGGATAATGCCGCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Thlaspi_alliaceum ACCAAGGTATAATGCCCCACCAAGATGGACCCGCTTATTTTCCTGTTGTA Alliaria_petiolata GCTATCCTGTCTCTAGGCTCACCTGTCGTTACGGACTTCAGTCCCCATTT Arabidopsis_lyrata GCTATATTGTCTCTTGGCTCACCTGTCGTTATGGACTTCAGTCCGCATTT Alyssum_alyssoides GCTATCCTGTCTCTTGGTTCACCTGTCGTAATGGACTTTAGTCCGCATTT Arabidopsis_thaliana GCTATCTTGTCTCTTGGCTCACCTGTTGTTATGGACTTCACTCCGCATTT Barbarea_vulgaris GCTATACTGTCTCTTGCCTCACCCGTTGTTATGGACTTCAGTCCGCATTT Aethionema_subulatum GCTATCCTATCTCTTGGAGCACCTGTTGTTATGGACTTTAGCCCGCATCC Iberis_gibraltarica GCAATATTGTCACTTGGTTCACCTGTTGTTATGGACTTTACTCCACATTC Physaria_newberryi GCTATACTGTCTCTTGGCTCACCTGTTGTTATGGACTTCAGTCCGCATTT Boechera_canadensis GCTATATTGTCTCTTGGCTCACCTGTTGTTATGGACTTCAGTCCGCATTT Turritis_glabra GCTATATTGTCTCTTGGCTCACCTGTTGTTATGGACTTCAGTCCGCATTT Cleome_serrulata GCCATTCTGTCTCTTGGGGCACCTGTCGTTATGGAGTTCAGTCCACATCC Sisymbrium_officinale GCTATCCTGTCTCTAGGCGCACCTGTCGTTATGGACTTCAGTCCGCATCT Erysimum_cheiri GCTATATTGTCTCTCGGCTCACCTGTCGTTATGGACTTCACTCCACATTT Aethionema_grandiflorum GCTATCCTATCTCTTGGAACACCTGTTGTTATGGACTTTAGTCCGCATCC Cardamine_pensylvanica GCTATACTGTCTCTTGCCTCACCCGTTGTTATGGACTTCAGTCCGCATTT Chorispora_bungeana GCTATCCTGTCTCTTGCCTCACCTGTCGTTATGGAATTCACTCCACATTT Capsella_rubella GCTATACTGTCTCTTGGCTCACCTGTCGTTATGGACTTCACTCCACATTT Catolobus_pendulus GCTATACTGACTCTTGGCTCACCTGTCGTTATGGACTTTACTCCACATTT Hesperis_matronalis GCTATCCTCTCTCTTGGCTCACCTGTCGTTATGGACTTCAGTCCGCATTT Coincya_monensis GCTATCCTGTCTCTCGGCTCACCTGTCGTTATGGACTTCAGTCCGCATTT Erysimum_cheiranthoides GCTATATTATCTCTTGGATCACCTGTCGTTATGGACTTCACTCCGCATTT Brassica_nigra GCTATCCTCTCTCTAGGCTCACCTGTCGTTATGGACTTCAGTCCGCATTT Rorippa_globosa GCTATACTGTCTCTTGCCTCACCTGTTGTTATGGACTTCACCCCGCATTT Berteroa_incana GCTATCCTGTCTCTAGGCTCACCTGTCGTGATGGACTTCAGTCCGCATTT Cakile_maritima GCCATCCTGTCTCTAGGCTCACCTGTCGTTATGGACTTCAGTCCTCATTT Hirschfeldia_incana GCTATCCTGTCTCTAGGCTCACCTGTCGTGATGGACTTCAGTCCGCATTT Raphanus_raphanistrum GCTATCCTATCTCTAGGCTCACCTGTCGTTATGGACTTCAGTCCGCATTT Iberis_sempervirens GCTATATTGTCGCTTGGCTCACCTGTTGTTATGGACTTTAGTCCACATTC Lepidium_campestre GCTATATTGTCTCTTGGCTCACCTGTAGTTATGGATTTCAGTCCGCATCT Lunaria_annua GCTATCCTGTCTCTAGGCTCACCTGTCGTTATGGACTTCAGTCCACATTT Pachycladon_fastigiatum -------------------------------------------------- Lepidium_didymum GCTATATTGTCTCTTGGCTCACCTGTCGTTATGGACTTCAGTCCGCATCC Rorippa_indica GCTATACTGTCTCTTGCCTCACCCGTTGTTATGGACTTCACTCCGCATTT Eutrema_salsugineum GCTATACTGTCTCTAGGCTCACCTGTAGTCATGGACTTCACTCCGCATTT Thlaspi_arvense GCTATCCTGTCTCTAGGCTCACCTGCCGTTATGGACTTTCGTCCGCATTT Schrenkiella_parvula GCTATCCTATCTCTAGGCTCACCTGTTCTTATGGACTTCAGTCCGCATTT Smelowskia_tibetica GCTATATTGTCTCTTGGCTCACCTGTCGTTATGGACTTCAGTCCGCATTT Thlaspi_alliaceum GCTATCCTGTCTCTAGGCTCACCTGTCGTTATGGACTTTTGTCCCCATTT Alliaria_petiolata AAGATTAAGATCAAGCGATGATGAGATTTCCAGAGATCAAAGTCCCTCAT Arabidopsis_lyrata GAGATTAAGATCAGGCGATGGTTACATATCCAAAGACCAAAGTCCCTCAT Alyssum_alyssoides GAGACTAAAATCAAGCGATGATAACATTACCAGCAATCAAAATCCCTCGT Arabidopsis_thaliana GAGATTAAGATCAGGCGATGGTTACATTTCCAAAGACCAAAGTCCCTCAT Barbarea_vulgaris GAGATTAAGATCAGGCGATGATGACATTTCCAGAGATCAAAGTCTCCCAT Aethionema_subulatum GAGATTTAGA---TCAGACAATGACATTTACAGAGATCAAAGTCCTCCAT Iberis_gibraltarica GAGATTTAGATCAAGCGATAATGACGACGACGATTCTAAAGAT---CCAT Physaria_newberryi GAGATTAAGATCTGGCGATGATTACACTTCCAGAGACCCAGGTCATTCGT Boechera_canadensis GAGATTAAGATTAGGAGATGATTACATTTCCAAAGACCGAAGTCCCTCAT Turritis_glabra GAGATTAAGATCAGGCGATGATTACATTTCCAAAGACCAAAGTCCTTCAT Cleome_serrulata AAGGTTTAGTGAAACAGATGAATGGAAG------------------CCTT Sisymbrium_officinale CAGATTAAGATCAAGCGATGATGGCGTTTCGAGAGACCAAAGTCCCTCAT Erysimum_cheiri GAGATTAAGATCAGGCGATGATCACATTTCCAGAGACCAAAGTCCC---- Aethionema_grandiflorum GAGATTTAGA---TCAGATAATGGTATTTACAGAAATCAAAGTCCTCCAT Cardamine_pensylvanica GAGAATAGGATCCGGCGATGATGACATTTCCAGAGATCAAAGTCCCCCAT Chorispora_bungeana GAAATTAAGATCAGGCAATGACGACATTTCTACAGATCGAAGTCCCTCAT Capsella_rubella GAGATTAAGGTCAGGTGATGATTACATTTCCAAAGACCAAAGTCTTTCAT Catolobus_pendulus GAGATTAAGATCAGGTGATGATTACATTTCCAAAGACCAAAGTCTCTCAT Hesperis_matronalis GAGATTAAGATCAGGCGATGAT------------------------TCAT Coincya_monensis GAGATTAAGATCAGGCGATGATGACATTTCCAGAGATCAAAGTGGATCAT Erysimum_cheiranthoides GCGATTAAGATCAGGCGATGATTACATTTCCAGAGACCAAAGTCCCTCAT Brassica_nigra GAGATTAAGATCAAGCGATGACGACATTTCCGGAGATCAAAGTGGATCAT Rorippa_globosa GAGATTAAGATCAGGCAACAATGAAATTTCCAGAGATCAAAGTCCCCCAT Berteroa_incana GAGATTACGATCAAGCGATGATTACATTCCCAGAGATCAGAGTCCCTCAT Cakile_maritima GAGATTAAGGTCAGGCGATGATGACATTTCCAGAGATCAAAATGGATCAT Hirschfeldia_incana GAGATTAACATCAGGTGATGATGACATTTCCAGAGGTCTAAGTGGATCTT Raphanus_raphanistrum GAGATTAATATCAGGCGATGACGACAATTCCAGAGATCAAAGTGGATCAT Iberis_sempervirens GCGACTTCGATCAAGCAAGGATGATGATTCCAGAGATCAAAGTACCCCAT Lepidium_campestre GAGATTAATATCAGGCGATGATTACATTTCCAGAGACCAAAGTCCATCAT Lunaria_annua AAGATTAAGATCAGGCGATGATGACATTTCCAGAGATCAAAGTCCCTCAT Pachycladon_fastigiatum -------------------------------------------------- Lepidium_didymum GAGATTAAGATCAGACAATGATTACATTTCCAGAGACCAAAGTCCCTCAT Rorippa_indica GAGATTAAGATCAGGCTACGATGGAATTTCCAGAGATCAAAGTCCC---- Eutrema_salsugineum AAGATTAAGATCAGGCAATGATGACATTTCCAGAGATCAAAGTCCCTCAT Thlaspi_arvense AAGATTAAGATCAGGCGACGATGGTATTTCCAGAGATCAAGGTTCATCAT Schrenkiella_parvula GAGATTAAGATCAGGCGATGATGACGTTTCTAGAGACCGAAGTCCCTCGT Smelowskia_tibetica GAGATTAAGATCAGGCGATGATTACGTTTCCAGAGACCAAACTCCTTCAT Thlaspi_alliaceum AAGATTAAGATCAGGCGATGATTGCATTTACAGAGATCAAGGTCCCTCAT Alliaria_petiolata TCTCTGTCTTGATGATGCCTCGAAGCTTACTGATCTTCAAAGATGAAACA Arabidopsis_lyrata TCTCCGTCTTGATGATGCCTCGAAGCTTACTGATCTTCAAAGATGATGCA Alyssum_alyssoides TCTCTGTCTTGTTGATGCCTCGAAGCTTACTGATCTTCAAAGATGATGCA Arabidopsis_thaliana TCTCTGTCTTGTTGATGCCTCAAAGCTTACTCATCTTCAAAGATGACGCA Barbarea_vulgaris TCTCTGTATTAATGATGCCTCGAAGCTTACTGATCTTCAAAGATGACGCA Aethionema_subulatum TCTCTGTCTTGATGATGCCTCGGAGCTTACTCATCTTCAAAGATGAAGCA Iberis_gibraltarica TCTCTGTTTTGTTGATGCCTCGAAGCTTATTGATCTTTAAAGATGAAGCA Physaria_newberryi TTTCTGTCTTGATGATGCCTCGAAGCTTACTCATCTTCAAAGATGACGCA Boechera_canadensis TCTCTGTCTTGATGATGCCTCGAAGCTTACTCATCTTCAAAGACGACGCA Turritis_glabra TCTCTGTCTTGATGATGCCTCGAAGCTTACTCATCTTCAAAGATGACGCA Cleome_serrulata TTTCTGTCTTGATGATGCCTAAGAGCTTATTGATCTTCAAAGATGAAGCA Sisymbrium_officinale TCTCTGTCTTGATGATGCCTCGAAGCTTATTAATCTTCAAAGACGACGCA Erysimum_cheiri -------------------------------------------------- Aethionema_grandiflorum TCTCTGTCTTGATGATGCCTCGGAGCTTACTCATCTTCAAAGATGAAGCA Cardamine_pensylvanica TCTCTGTATTGATGATGCCTCGAAGCTTACTGATCTTCAAAGATGACTCA Chorispora_bungeana TCTCTGTCTTGTTGATGCCTCGAAGCTTACTAATCTTCAAAGATGAAGCA Capsella_rubella TCTCTGTCTTGATGAGGCCTCGAAGCTTACTCATCTTCAAAGATGACGCA Catolobus_pendulus TCTCTGTCTTGATGATGCCTCGAACCTTACTCATCTTCAAAGATGACGCA Hesperis_matronalis TCTCTGTTTTGATGATGCCTCGAAGCTTGCTCATCTTCAAAGATGAAGCA Coincya_monensis TCTCTGTTTTGATGATGCCACGAAGTCTACTAATCTTCAAAAATGAAGCT Erysimum_cheiranthoides TCTCTGTATTGATGATGCCTCGAAGCTTACTCATCTTCAAAGATGATGCG Brassica_nigra TCTCTGTTTTGATGATGCCTAGAAGCCTACTAATCTTCAAAGATGAAGCT Rorippa_globosa TCTCTGTATTGATGATGCCTCGAAGCTTACTGATCTTCAAAGATGACGCA Berteroa_incana TCTCTGTCTTGTTAATGCCTAGAAGCTTACTGATCTTCAAAGATGAAGCA Cakile_maritima TCTCTGTCTTAATGATGCCTCGAAGCCTACTAATCTTCAAAGATGAAGCT Hirschfeldia_incana TCTCTGTCTTGATGATGCCTACAAGCTTACTAATCTTCAAAGATGAAGCT Raphanus_raphanistrum TCTCTGTTTTGATGATGCCTCGAAGCCTACTAATCTTCAAAGATGAAGCT Iberis_sempervirens TCTCTGTTTTGATGATGCCTCGAAGCTTACTGATCTTCAAAGATGAAGCA Lepidium_campestre TCTCTGTCTTGATGATGCCTCGAAGCTTATTGGTCTTCAAAGATGAAGCA Lunaria_annua TCTCTGTCTTGATGATGCCTCGAAGCTTACTGGTCTTCAAAGATGAAACA Pachycladon_fastigiatum -------------------------------------------------- Lepidium_didymum TCTCTGTCTTGATGATGCCTCGAAGTTTATTGATCTTCAAAGATGAAGCA Rorippa_indica -------------------------------------------------- Eutrema_salsugineum TTTCTGTTTTGATGATGCCTAGAAGCTTACTGATCTTCAAAGATGAAACA Thlaspi_arvense TCTCTGTCTTGATGATGCCTCGAAGCTTACTGATCTTTAAAGATGAAGCA Schrenkiella_parvula TCTCTGTTTTGATGATGCCTCGAAGTTTACTGATTTTCAAAGATGAAGCA Smelowskia_tibetica TCTCTGTCTTGATGATGCCTCGAAGCTTACTGATCTTCAAAGATGAAGCA Thlaspi_alliaceum TCTCTGTCTTGATGATGCCTCGAAGCTTACTGATCTTTAAAGATGAAGCA Alliaria_petiolata TATTCAGATTTTCTCCACGGCATTAGCGATAGTCAAACACAATGCTACAA Arabidopsis_lyrata TATTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAA Alyssum_alyssoides TACTCTGATTTCCTCCACGGAATTAGCGATAGTCCAACACAATCTTACAA Arabidopsis_thaliana TATTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGTTACAA Barbarea_vulgaris TACTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAGTGCTACAA Aethionema_subulatum TACTCAGATTTCCTCCATGGAATTAGCGATAATCCAGCACAATGCTATGA Iberis_gibraltarica TATTCAGATTTTCTCCATGGCATTAGTGATAGTCCAATACAATGTTATAA Physaria_newberryi TACACAGATTTCCTCCATGGTATTAGTGATAGTCCAACACAATGCTACAA Boechera_canadensis TATTCAGATTTCCTCCATGGTATTAGCGATAGTCCAACACAATGCTACAA Turritis_glabra TATTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAA Cleome_serrulata TACTCGGACTTCTTGCATGGAATTGGCGATGATCCAATGCAATGTTTTGA Sisymbrium_officinale TATTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAA Erysimum_cheiri -------------------------------------------------- Aethionema_grandiflorum TACTCAGATTTCCTCCATGGAATTAGCGATAATCCAGCACAATGCTATGA Cardamine_pensylvanica TACTCAGATTTCCTTCACGGGATTAGCGATAGTCCAACGCAATGCTACAA Chorispora_bungeana TACTCAGATTTCCTCCACGGCATTAGCGATAGCCCAACACAATGCTATGA Capsella_rubella TATTCAGATTTCCTCCATGGTATCAGCGATAGTCCAACACATTGCTACAA Catolobus_pendulus TATTCAGATTTCCTCCACGGCATCAGCGATAGTCCAACACAATGCTACAA Hesperis_matronalis TACTCAGATTTCCTCCATGGGATTAGCGATAGTCCAACACAATGCTATGA Coincya_monensis TACTCAGATTACCTCTACGGAATCAGCGATAGTCCAACACATTGCTACAA Erysimum_cheiranthoides TATTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAG Brassica_nigra TACTCAGATTACCTCCACGGAATTAGCGATAGTCAAGCACAATGCTACAA Rorippa_globosa TACTCTGATTTCCTTCATGGAATTAGCGATAGTCCAATACAATGCTACAA Berteroa_incana TACTCGGATTACCTCCACGGAATTACCGATAGTCCAACACAATGCTACAA Cakile_maritima TACTCAGATTACCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAA Hirschfeldia_incana TACTCAGATTACCTCCACGGAATCAGCGATAGTCCAACACATTGCTACAA Raphanus_raphanistrum TACTCAGATTACCTCCACGGCATTAGCGATAGTCCAACACATTGCTACAA Iberis_sempervirens TATTCAGATTTCCTCCATGGTATTAGTGATAGTCCAACACAATGCTATAA Lepidium_campestre TATTCAGATTTCCTCCACGGTATTAGCGATAGTCCAACACAATGCTACAA Lunaria_annua TACTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAA Pachycladon_fastigiatum -------------------------------------------------- Lepidium_didymum TATGCAGATTGGCTCCACGGCATTAGCGATAGTCCAACACAATGCTATAA Rorippa_indica -------------------------------------------------- Eutrema_salsugineum TACTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAA Thlaspi_arvense TACTCAGATTTCCTCCATGGCATTAGCGATAGTCCAACACAATGCTACAA Schrenkiella_parvula TACTCAGATTTCCTCCACGGCATTACCGATAGTCCAACACAATGCTACAA Smelowskia_tibetica TATTCAGATTTCCTCCACGGCATTAGCGATAGTCCAACACAATGCTACAA Thlaspi_alliaceum TATTCAGATTTCCTTCACGGGATTAGCGATAGTCCAACACAATGCTACAC Alliaria_petiolata GCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCCAGAGAAAATG Arabidopsis_lyrata CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGATG Alyssum_alyssoides CCAGGTCGTTAATGAAGCTGAAGCTATAGCTTTGGATTCAAGTAAAGATG Arabidopsis_thaliana CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGATG Barbarea_vulgaris CCAGGTCGTTAATGAAGCTGAAGCTTTGGGTCAGGATTCAAGAAAAGATG Aethionema_subulatum CCAGGTCATTAACGAAGCTGAAGCGTTAGCTTTAGATCTCAGAGAAAATG Iberis_gibraltarica CCAGGTTATTAATGAAGCTGAAGCTTTAGCTTAT---------TCAGATG Physaria_newberryi CCAGGTCGTTAATGATGCTGAAGCTTTGGCTTACAATTCAAGAAAAGATG Boechera_canadensis CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACAATGCAAGAAAAGATG Turritis_glabra CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGATG Cleome_serrulata TGGGGTCGTTAATGAAGCTGAAGCTGAAGCTTTGGAGATGAGAAAGGGAG Sisymbrium_officinale TCAGGTCGTTAATGAAGCTGAAGCTGAAGCTTTGGATTCAAGAAAAGATG Erysimum_cheiri -------------------------------------------------- Aethionema_grandiflorum CCAGGTCATTAACGAAGCTGAAGCTCTAGCTTTGGATCTCAGAGAAAATG Cardamine_pensylvanica CAAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAAAAAAGATG Chorispora_bungeana CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAAATG Capsella_rubella CCAGGTCGTTAACGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGACG Catolobus_pendulus CCAGGTCGTTAATAAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGACG Hesperis_matronalis CAAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAATAAAGATG Coincya_monensis ACAGGTCGTCAATGAAGCTGAAGCTTTGGGTTACGATTCAAGAACAGATG Erysimum_cheiranthoides CCAGGTCGTTAATGAAGCTGAAGCTCTGGCTTACGATTCAAGCAAAGATG Brassica_nigra ACAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCGATAAAAGTGA Rorippa_globosa CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGATA Berteroa_incana CCAGGCCATTAATGAAGCTGAAGCTCTAGCTTTGGATCCAAGAAAAGATG Cakile_maritima ACAGGTCGTGAATGAAGCTGAAGCTTTGGCTTACTCTGGTGGAGAAGATG Hirschfeldia_incana ACAGGTCGTGAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAACAGATG Raphanus_raphanistrum ACAGGTCGTGAATGAAGCTGAAGCTTTGGCTTGCGATTCAAGAACAGACG Iberis_sempervirens CCAGGTTGTTAAT------GAAGCTTTAGCTTACTCTAATCAAGAAGATG Lepidium_campestre CAAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGATT Lunaria_annua CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGATG Pachycladon_fastigiatum -------------------------------------------------- Lepidium_didymum CCAGGTCGTCAATGAAGCTGAAGCTTTGACTTACGATTCAAGAAAAGATG Rorippa_indica -------------------------------------------------- Eutrema_salsugineum GCAGGTCGTTAACGAAGCTGAAGCATTGGCTTACGAGTCCAGGAAAAGCG Thlaspi_arvense GCAGGTCGTTAATGAAGCTGAAGCTTTTGCTTACGATTCAAGAACAGATG Schrenkiella_parvula CCAGGTCGTGAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAAATG Smelowskia_tibetica CCAGGTCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCAAGAAAAGATG Thlaspi_alliaceum GCAGGCCGTTAATGAAGCTGAAGCTTTGGCTTACGATTCCAGAGAAAATG Alliaria_petiolata GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Arabidopsis_lyrata GTGACAAGATTCTTCACAGAGACCAAACTCGAGTCTCACTTACTTGCCGT Alyssum_alyssoides GTGACAAGATTCTTCACAGAGACCAAACTAGAGTTTCACTTACATGCCGT Arabidopsis_thaliana GTGACAAGATTTTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Barbarea_vulgaris GTGATAAGATTCTTCACAGAGACCAAACTAGAGTTTCACTTACTTGCCGT Aethionema_subulatum GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Iberis_gibraltarica GTGATAAGATTCTTCATAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Physaria_newberryi GTGATAAGGTTCTTCATAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Boechera_canadensis GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Turritis_glabra GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Cleome_serrulata GTGACAAGATTCTTAAAAGAGACCAAACACGTGTCTCGCTGACGTGTCGT Sisymbrium_officinale GTGACAAGATTCTCCACAGAGACAAAACTCGAGTTTCACTTACTTGCCGT Erysimum_cheiri -------------------------------------------------- Aethionema_grandiflorum GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Cardamine_pensylvanica GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Chorispora_bungeana GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Capsella_rubella GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Catolobus_pendulus GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Hesperis_matronalis GTGATAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Coincya_monensis GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACCTGCCGT Erysimum_cheiranthoides GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Brassica_nigra GTGATAAGATTCTACACAGAGACCAAACTCGAGTTTCACTTACCTGCCGT Rorippa_globosa GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Berteroa_incana GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCTCTAACTTGCCGT Cakile_maritima GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACCTGCCGT Hirschfeldia_incana GTGACAAGATTCTCCACAGAGACCAAACTCGAGTTTCACTTACCTGCCGT Raphanus_raphanistrum GTGACAAGATTCTTCACAGAGACCAAACTCGCGTGTCACTTACCTGCCGT Iberis_sempervirens GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Lepidium_campestre GTGACAAAATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Lunaria_annua CTGACAAGATTCTTCATAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Pachycladon_fastigiatum -------------------------------------------------- Lepidium_didymum GTGATAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Rorippa_indica -------------------------------------------------- Eutrema_salsugineum GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Thlaspi_arvense GTGACAAGATTCTTCACAGAGACCAAACTCGGGTTTCACTTACTTGCCGT Schrenkiella_parvula GTGACAGGATTCTTCACAGAGACAAAACTCGAGTTTCACTTACTTGCCGT Smelowskia_tibetica GTGACAAAATTCTTCAGAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Thlaspi_alliaceum GTGACAAGATTCTTCACAGAGACCAAACTCGAGTTTCACTTACTTGCCGT Alliaria_petiolata TTAGTGCCCAAAGTCCATAAGAATCTGTTCAGG Arabidopsis_lyrata TTAGTTCCCAAAGTCCATAAGAATCTCTTCAAA Alyssum_alyssoides TTAGTCCCCAAAGTCCGTAAGAATCTCTTCAAG Arabidopsis_thaliana CTAGTTCCCAAAGTCCGTAAAAATCTCTTCAGA Barbarea_vulgaris TTAGTACCCAAAGTCCATAAGAATCTCTTCAGG Aethionema_subulatum TTAGTGCCTAAAGTTCATAAGAATCTGTTCAGG Iberis_gibraltarica TTAGTACCTAAAGTCTATAAGAATCTGTTGAGG Physaria_newberryi TTTGTACCCAAAGTTTATAAAAGCCTCTTCAGG Boechera_canadensis TTAGTGCCCAAAGTCCATAAGAATATCTTCAAG Turritis_glabra TTAGTGCCCAAAGTCCATAAAAATCTCTTCAGG Cleome_serrulata TTGGTGCCCAGAGTGCATAAAAACCTGTTTAGG Sisymbrium_officinale TTAGTGCCCAAAGTCCATAAGAATCTGTTCAGG Erysimum_cheiri --------------------------------- Aethionema_grandiflorum TTAGTGCCTAAAGTTCATAAGAATCTGTTCAGG Cardamine_pensylvanica TTAGTCCCCAAAGTCCATAAAAATCTCTTCAGG Chorispora_bungeana TTAGTTCCCAAA--------------------- Capsella_rubella TTAGTGCCCAAAGTCCATAAAAATCTCTTCAGG Catolobus_pendulus TTAGTGCCCAAAGTCCATAAAAATCTCTTCAGA Hesperis_matronalis TTAGTGCCCAAAGTCCATAAAAATCTCTTCAGG Coincya_monensis TTAGTGCCCAAAGTCCATAAGAATCTCTTCAGA Erysimum_cheiranthoides TTAGTGCCCAAAGTCCATAAGAATCTCTTCAGG Brassica_nigra TTAGTCCCCAAAGTCCATAAGAATCTCTTCAGG Rorippa_globosa TTAGTTCCCAAAGTCCATAAGAATCTCTTCAGA Berteroa_incana TTAGTCCCCAAAGTCCGTAAGAATCTCTTCAGG Cakile_maritima TTAGTCCCCAAAGTCCATAAGAACCTCTTCAGG Hirschfeldia_incana TTAGTCCCCAAAGTCCATAAGAATCTCTTCAGG Raphanus_raphanistrum TTAGTCCCCAAAGTCCATAAAAATCTTTTCAGG Iberis_sempervirens TTAGTTCCTAAAGTCTACAAGAATCTGTTGAGA Lepidium_campestre TTAGTGCCCAAAGTCCATAAGAATCTGTTCAGG Lunaria_annua TTAGTTCCCAAGGTCCATAAAAATCTGTTCAGG Pachycladon_fastigiatum --------------------------------- Lepidium_didymum TTGGTACCCAAAGTCCATAAGAATCTGTTCAGG Rorippa_indica --------------------------------- Eutrema_salsugineum TTAGTGCCCAAAGTCCATAAGAATCTCTTCAGG Thlaspi_arvense TTAGTGCCCAAAGTCCATAAGAATCTGTTCAGG Schrenkiella_parvula TTAGTGCCCAAAGTCCATAAGAATTTGTTCAGG Smelowskia_tibetica TTAGTACCCAAAGTCCATAAAAATCTGTTCCGG Thlaspi_alliaceum TTAGTGCCCAAAGTCCATAGGAATCTGTTCAGG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 483; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 483; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 483; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1441512835779; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 475417195308045834; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 689233055405156674; mqVersion 301; checksumv 0 3 2479754951 null getNumChars 483 numChars 483 getNumTaxa 38 numTaxa 38 short true bits 15 states 15 sumSquaresStatesOnly 396985.0 sumSquares 396985.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #689233055405156674 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;