#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=22;
	TAXLABELS
		'Hepatitis E virus HEV-US1 AF060668' Swine_hepatitis_E_virus_No._570_swJ570_AB073912 'Hepatitis E virus Ch-T11 AF151962' Hepatitis_E_virus_Muscle_KP127669 Hepatitis_E_virus_Liver_KP127670 Swine_hepatitis_E_virus_NLSW20_AF336290 Hepatitis_E_virus_Osh_205_AF455784 Hepatitis_E_virus_It1_AF110390 Hepatitis_E_virus_Au1_AF279123 Swine_hepatitis_E_virus_Arkell_AY115488 Hepatitis_E_virus_Liver_KP127667 Hepatitis_E_virus_Liver_KP127668 Swine_hepatitis_E_virus_BB02_FJ998008 Hepatitis_E_virus_wbGER27_FJ705359 'Hepatitis E virus HE-JA10 AB360348' Swine_hepatitis_E_virus_NLSW22_AF336291 Hepatitis_E_virus_WB69_KF303500 Hepatitis_E_virus_wbGER155_FJ748528 Swine_hepatitis_E_virus_NLSW97_AF336296 'Hepatitis E virus rat/R63/DEU/2009 R63 GU345042' 'Hepatitis E virus SAR-55 M80581' Hepatitis_E_virus_Mexican_M74506 
	;
END;

BEGIN CHARACTERS;
	TITLE  'HEV-alignment-Schielke-2015';
	DIMENSIONS  NCHAR=148;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	'Hepatitis E virus HEV-US1 AF060668'             GGGTCAACTGTTTTACTCCCGCCCTGTTGTCTCGGCCAATGGCGAGCCAACAGTAAAGTTATACACATCTGTTGAGAATGCGCAGCAAGACAAGGGCATCACCATTCCACACGACATAGATTTAGGTGACTCCCGTGTGGTTATCCAG
	Swine_hepatitis_E_virus_No._570_swJ570_AB073912  GGGTCAGCTCTTCTACTCCCGCCCTGTCGTCTCGGCCAATGGCGAGCCGACTGTAAAGTTGTATACATCTGTTGAGAATGCACAGCAGGATAAAGGCATCACCATCCCGCACGATATAGATCTTGGTGACTCCCGTGTGGTTATTCAG
	'Hepatitis E virus Ch-T11 AF151962'              TGGTCAGTTGTTTTATTCCCGCCCCGTCGTCTCGGCCAATGGCGAGCCGACAGTGAAACTTTACACCTCAGTCGAGAATGCTCAGCAGGATAAAGGGATTGCTATTCCACATGACATTGATCTTGGTGAGTCCCGAGTTGTTATCCAA
	Hepatitis_E_virus_Muscle_KP127669                GGGTCAACTGTTCTACTCCCGCCCCGTTGTCTCGGCCAATGGCGAGCCGACAGTAAAGCTATATACATCTGTTGAGAATGCGCAGCAGGACAAGGGGATTACCATCCCACACGATATAGATTTGGGCGACTCTCGTGTAGTCATTCAG
	Hepatitis_E_virus_Liver_KP127670                 GGGCCAATTGTTTTACTCCCGCCCTGTTGTCTCGGCCAATGGCGAGCCAACTGTAAAGTTATATACATCTGTTGAGAATGCGCAGCAGGATAAGGGCATTGCCATACCACATGATATAGATCTGGGTGACTCCCGTGTGGTTATCCAG
	Swine_hepatitis_E_virus_NLSW20_AF336290          AGGCCAGCTATTTTACTCCCGTCCGGTTGTCTCAGCCAATGGCGAGCCGACTGTTAAGTTATACACCTCCGTCGAGAATGCACAGCAGGATAAGGGCATTGCTATACCGCATGATATAGATTTGGGAGATTCCCGTGTGGTTATTCAG
	Hepatitis_E_virus_Osh_205_AF455784               GGGTCAATTGTTTTACTCCCGTCCTGTCGTCTCAGCCAATGGCGAGCCGACTGTTAAACTGTACACCTCCGTCGAGAATGCACAGCAGGATAAGGGTATTGCCATACCGCATGATATAGACTTAGGGGACTCTCGTGTGGTTATCCAG
	Hepatitis_E_virus_It1_AF110390                   GGGTCAACTGTTCTACTCCCGCCCTGTCGTCTCAGCCAATGGCGAGCCGACTGTCAAGTTATACACATCTGTTGAGAATGCACAGCAGGATAAGGGGATAGCTATTCCACATGACATAGATTTGGGCGACTCTCGTGTGGTGATCCAG
	Hepatitis_E_virus_Au1_AF279123                   GGGACAGTTATTCTACTCCCGCCCTGTYGTCTCAGCCAATGGCGAGCCGACTGTTAAATTATATACATCTGTAGAGAATGCGCAGCAGGACAAGGGGATTGCCATCCCACATGATATAGATCTGGGCGACTCTCGTGTGGTGATCCAG
	Swine_hepatitis_E_virus_Arkell_AY115488          GGGTCAACTGTTCTACTCCCGCCCTGTTGTCTCAGCCAATGGCGAGCCAACCGTAAAGTTATATACATCTGTCGAGAATGCACAGCAAGATAAGGGCATTACCATCCCGCATGATATAGACTTGGGGGACTCCCGTGTGGTTATCCAG
	Hepatitis_E_virus_Liver_KP127667                 GGGTCAACTGTTCTACTCCCGCCCCGTTGTCTCGGCCAATGGCGAGCCGACAGTAAAGCTATATACATCTGTTGAGAATGCGCAGCAGGACAAGGGGATTACCATCCCACACGATATAGATTTGGGCGACTCTCGTGTAGTCATTCAG
	Hepatitis_E_virus_Liver_KP127668                 GGGTCAACTGTTCTACTCCCGCCCCGTTGTCTCGGCCAATGGCGAGCCGACAGTAAAGCTATATACATCTGTTGAGAATGCGCAGCAGGACAAGGGGATTACCATCCCACACGATATAGATTTGGGCGACTCTCGTGTAGTCATTCAG
	Swine_hepatitis_E_virus_BB02_FJ998008            GGGACAGTTGTTCTACTCCCGCCCTGTCGTTTCGGCCAATGGCGAGCCGACTGTTAAATTATATACATCTGTAGAGAATGCACAGCAAGATAAGGGGATTGCCATCCCGCATGACATAGATCTGGGTGACTCTCGTGTGGTGATCCAG
	Hepatitis_E_virus_wbGER27_FJ705359               GGGACAGTTATTTTACTCCCGCCCTGTCGTCTCAGCCAATGGCGAGCCGACTGTCAAGTTATACACATCTGTAGAGAATGCGCAGCAGGATAAAGGGATCGCTATCCCACATGATATAGATCTGGGTGACTCCCGTGTGGTCGTCCAA
	'Hepatitis E virus HE-JA10 AB360348'             GGGTCAACTGTTTTACTCCCGCCCTGTTGTCTCGGCCAATGGCGAGCCAACAGTAAAGTTATATACATCTGTTGAGAATGCGCAGCAAGATAAGGGCATTACCATCCCACACGATATAGATCTGGGTGACTCCCGTGTGGTTATTCAG
	Swine_hepatitis_E_virus_NLSW22_AF336291          GGGTCAATTGTTTTACTCCCGCCCTGTTGTCTCGGCCAATGGCGAGCCAACAGTAAAGTTGTATACATCTGTTGAGAATGCGCAGCAAGATAAGGGCATCACCATTCCACATGATATAGATCTTGGTGACTCCCGTGTGGTTATTCAG
	Hepatitis_E_virus_WB69_KF303500                  GGGTCAACTGTTCTACTCCCGCCCCGTTGTCTCGGCCAATGGCGAGCCGACAGTAAAGCTATATACATCTGTTGAGAATGCGCAGCAGGACAAGGGCATTACCATCCCACACGATATAGATCTGGGTGACTCCCGTGTAGTCATTCAG
	Hepatitis_E_virus_wbGER155_FJ748528              GGGTCAACTGTTCTACTCCCGCCCTGTTGTCTCGGCCAATGGCGAGCCAACAGTAAAGTTGTATACATCTGTCGAGAATGCGCAGCAAGACAAGGGCATTACCATCCCACACGATATAGATTTGGGTGACTCCCGTGTGGTTATTCAG
	Swine_hepatitis_E_virus_NLSW97_AF336296          AGGTCAATTGTTTTACTCCCGCCCGGTTGTCTCAGCCAATGGCGAGCCGACTGTTAAGTTGTACACCTCTGTCGAGAATGCACAGCAGGACAAGGGCATTGCTATACCACACGATATAGATCTAGGGGATTCTCGTGTGGTTATACAA
	'Hepatitis E virus rat/R63/DEU/2009 R63 GU345042' AGGGCAGCTGTTTTACGGCCGCCCTCAGGTGTCTGAGAACGGTGAGCCCTCTGTCAAACTCTACACCTCTGTTGAGGCCGCCCAATTAGACCAAGGTGTGACAATACCTCATGATATAGACCTAGGGTTGTCGACTGTCACACTGCAA
	'Hepatitis E virus SAR-55 M80581'                TGGCCAGCTGTTCTACTCTCGCCCCGTCGTCTCAGCCAATGGCGAGCCGACTGTTAAGCTGTATACATCTGTGGAGAATGCTCAGCAGGATAAGGGTATTGCAATCCCGCATGACATCGACCTCGGGGAATCCCGTGTAGTTATTCAG
	Hepatitis_E_virus_Mexican_M74506                 CGGGCAACTGTTTTATTCCCGCCCGGTTGTCTCAGCCAATGGCGAGCCAACCGTGAAGCTCTATACATCAGTGGAGAATGCTCAGCAGGATAAGGGTGTTGCTATCCCCCACGATATCGATCTTGGTGATTCGCGTGTGGTCATTCAG
;
END;

BEGIN TREES;
	Title 'HEV-alignment-Schielke-2015';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 'Hepatitis E virus HEV-US1 AF060668',
[1] 		2 Swine_hepatitis_E_virus_No._570_swJ570_AB073912,
[2] 		3 'Hepatitis E virus Ch-T11 AF151962',
[3] 		4 Hepatitis_E_virus_Muscle_KP127669,
[4] 		5 Hepatitis_E_virus_Liver_KP127670,
[5] 		6 Swine_hepatitis_E_virus_NLSW20_AF336290,
[6] 		7 Hepatitis_E_virus_Osh_205_AF455784,
[7] 		8 Hepatitis_E_virus_It1_AF110390,
[8] 		9 Hepatitis_E_virus_Au1_AF279123,
[9] 		10 Swine_hepatitis_E_virus_Arkell_AY115488,
[10] 		11 Hepatitis_E_virus_Liver_KP127667,
[11] 		12 Hepatitis_E_virus_Liver_KP127668,
[12] 		13 Swine_hepatitis_E_virus_BB02_FJ998008,
[13] 		14 Hepatitis_E_virus_wbGER27_FJ705359,
[14] 		15 'Hepatitis E virus HE-JA10 AB360348',
[15] 		16 Swine_hepatitis_E_virus_NLSW22_AF336291,
[16] 		17 Hepatitis_E_virus_WB69_KF303500,
[17] 		18 Hepatitis_E_virus_wbGER155_FJ748528,
[18] 		19 Swine_hepatitis_E_virus_NLSW97_AF336296,
[19] 		20 'Hepatitis E virus rat/R63/DEU/2009 R63 GU345042',
[20] 		21 'Hepatitis E virus SAR-55 M80581',
[21] 		22 Hepatitis_E_virus_Mexican_M74506;
	TREE 'PHYLIP 1+' = ((10:0.05542,(5:0.02714,(16:0.02724,(1:0.03798,(15:0.01147,18:0.02351)174:0.00555)88:0.00106)214:0.01816)84:0.01012),((2:0.06173,(17:0.00809,(12:0.0,(4:0.0,11:0.0)983:0.0)995:0.01954)969:0.05218)67:0.00379,((8:0.05402,(14:0.06845,(9:0.02801,13:0.0373)694:0.01636)344:0.00864)409:0.01417,((7:0.0648,(6:0.06483,19:0.05609)385:0.00823)280:0.01773,((3:0.12315,20:0.41782)124:0.00432,(21:0.08669,22:0.10714)298:0.00918)93:0.00856)366:0.01931)477:0.0198)160)[% ] [%unrooted = on ] [%unrooted = on ] [%  setBetweenBits = selected ];
END;