#NEXUS [written Thu Oct 22 10:11:32 CDT 2015 by Mesquite version 3.04 (build 725) at cbg002427.local/10.0.7.43] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=40; TAXLABELS Cantharellus_chicagoensis_KP639201 Cantharellus_chicagoensis_KP639197 Cantharellus_chicagoensis_KP639198 Cantharellus_chicagoensis_KP639199 Cantharellus_chicagoensis_KP639200 Cantharellus_roseocanus_KP639205 Cantharellus_aff_roseocanus_KP639204 Cantharellus_sp_KP639202 Cantharellus_sp_KP639206 Cantharellus_cibarius_KP639203 Cantharellus_cascadensis_AY041180 Cantharellus_cascadensis_AY041181 Cantharellus_cibarius_AY041175_ Cantharellus_cibarius_AY041176_ Cantharellus_flavus_JX030457_ Cantharellus_flavus_JX030436 Cantharellus_flavus_JX030467 Cantharellus_phasmatis_JX030465 Cantharellus_phasmatis_JX030460 Cantharellus_phasmatis_JX030462 Cantharellus_cibarius_JX030469 Cantharellus_formosus_AY041184 Cantharellus_formosus_AF044695 Cantharellus_roseocanus_AY041173 Cantharellus_roseocanus_AY041174 Cantharellus_roseocanus_AYO41172 Cantharellus_tenuithrix_JN944017 Cantharellus_subalbidus_AY041179 Cantharellus_subalbidus_AYO41178_ Cantharellus_lewisii_JN944021_ Cantharellus_californicus_DQ974688_ Cantharellus_altipes_JN944018_ Cantharellus_amethysteus_JN944020__ Cantharellus_cinnabarinus_JN944016_ Cantharellus_tabernensis_JN944013_ Cantharellus_appalachiensis_HQ386220_ Cantharellus_appalachiensis_HQ416695_ Cantharellus_appalachiensis_HQ416694_ Cantharellus_guyanensis_JQ915099_ Cantharellus_guyanensis_JQ915096 ; END; BEGIN CHARACTERS; TITLE 'Leacock_Cantharellus_ITS_Matrix'; DIMENSIONS NCHAR=502; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Cantharellus_chicagoensis_KP639201 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGTAAAC-TGATCCAG-TCGTA--CC-ACT---GG--TTG-ACTGGGGATTGGGCTCGC---TTGGAGCGA-------TATC--G-----CTCT--GGCTKGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-GTGCATT-GGGGACGCAGGCTCT-GCGCT----------ATATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TCTTCAGT-CTAGCC------AAC--AAGGCTGGGTT---GGACTTTGGGGC-TGCA-TTGGGGGCGT--AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-GTGCA----TGATTGGA---CTTCAACTA Cantharellus_chicagoensis_KP639197 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGTAAAC-TGATCCGG-TCGTA--CC-ACT---GG--TTG-ACTGGGGATTGGGCTCGC---TTGGAGCGA-------TATC--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-GTGCATT-GGGGACGCAGGCTCT-GCGCT----------ATATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TCTTCAGT-CTAGCC------AAC--AAGGCTGGGTT---GGACTTTGGGGC-TGCA-TTGGGGGCGT--AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-GTGCA----TGATTGGA---CTTCAACTA Cantharellus_chicagoensis_KP639198 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGTAAAC-TGATCCAG-TCGTA--CC-ACT---GG--TTG-ACTGGGGATTGGGCTCGC---TTGGAGCGA-------TATC--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-GTGCATT-GGGGACGCAGGCTCT-GCGCT----------ATATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TCTTCAGT-CTAGCC------AAC--AAGGCTGGGTT---GGACTTTGGGGC-TGCA-TTGGGGGCGT--AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-GTGCA----TGATTGGA---CTTCAACTA Cantharellus_chicagoensis_KP639199 AGATGCATG-CACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGTAAAC-TGATCCGG-TCGTA--CC-ACT---GG--TTG-ACTGGGGATTGGGCTCGC---TTGGAGCGA-------TATC--G-----CTCT--GGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cantharellus_chicagoensis_KP639200 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGTAAAC-TGATCCGG-TCGTA--CC-ACT---GG--TTG-ACTGGGGATTGGGCTCGC---TTGGAGCGA-------TATC--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-GTGCATT-GGGGACGCAGRCTCT-GCGCT----------ATATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TCTTCAGT-CTAGCC---------------------------------------------------------------------------------------------------------------------------- Cantharellus_roseocanus_KP639205 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTC????? Cantharellus_aff_roseocanus_KP639204 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATTGGGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AG------------------------------------------------------------------- Cantharellus_sp_KP639202 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCRCCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATTGGGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_sp_KP639206 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTG-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_cibarius_KP639203 ??????????????TCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTAGGCTGGGGATTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGATGCTTTG--ATTGGGG-TTTTCMGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGRCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_cascadensis_AY041180 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAACTTGATCCAG--TGTA-ACCGGTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGCG---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGGCCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_cascadensis_AY041181 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAACTTGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGCG---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGGCCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_cibarius_AY041175_ AATTGCATGGCACTTCTAATCTA?CACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGC?GAGGATGAAG?CAAGGGTATCTCTGGCTGAGGGTAATGGGAACTTGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TCGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_cibarius_AY041176_ AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TCGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCAT--ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_flavus_JX030457_ AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTAGGCTGGGGATTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGATGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_flavus_JX030436 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATT?CAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGA?GGTAATGAGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTAGGCTGGGGATTGGGCTTGC---TTGGGGC?---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CT?TCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGATGCTTTG--ATTGGGG-TTTTCA?T-CTA?CC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTG?G????CA-AG?GCAGCTCTG-TTCGTGG?GTCCGATGACCG-TCATG-A?GCA??C?TGATTGGA---CTTCAACCA Cantharellus_flavus_JX030467 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTAGGCTGGGGATTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGATGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_phasmatis_JX030465 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGACTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGCT-----------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-CCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_phasmatis_JX030460 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGACTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGCT-----------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-CCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_phasmatis_JX030462 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGACTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGCT-----------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-CCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_cibarius_JX030469 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACCA Cantharellus_formosus_AY041184 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAAAACTTGATCCAG--CGTA-CCG-ACT---GG--TCA--CTGGGGATTGGGCTTGC---TTGGGGTGGTTATTATTATT--G-----CTCT--GGCTTGCCTTAAAATCAT-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGCT-------ATAATAAG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TCTTCAGT-CTAGCC------AACA-AAGGCTGGGTTG--GAACTTTGGGGC-TGCA-TTGGGGGCGT--AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-GTGCA----TGATTGGA---CTTCAACCA Cantharellus_formosus_AF044695 AGTTGAATGGAACTTCTA?TCTAACACCAAGCGAATCATCGAGTCTTGGAACG?AAACGGCACCCT?CCAGTCCATTCCAAAGCGGTGG?GGAGGATGAAGACAAGGGT?TCTCTGGCTGAGGGTAATGAAAAC-TGATCCAG--CGTA-CCCGACT---GG--TCA--CTGGGGATTGGGCTTGC---TTGGGGTGGTTATTATTATT--G-----CTCT--GGCTTGCCTTAAAATCAT-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGCT-------ATAATAAG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TCTTCAGT-CTAGCC------AACA-AAGGCTGGGTTG--GAACTTTGGGGC-TGCA-TTGGGGGCGT--AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-GTGCA----TGATTGGA---C?TCAACCA Cantharellus_roseocanus_AY041173 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAACTTGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_roseocanus_AY041174 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAACTTGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_roseocanus_AYO41172 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAAC-TGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_tenuithrix_JN944017 AATTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTG-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTG---------ATTTTG-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGCGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATC-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCCGGGTTGAAGGACTTTGGGGA-TGCA-TTGGGGGCCCA-AGGGCAGCTCTG-TTCGCGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_subalbidus_AY041179 AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAACTTGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_subalbidus_AYO41178_ AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGGAACTTGATCCAG--TGTA-ACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGCA---------ATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA---CTTCAACTA Cantharellus_lewisii_JN944021_ AGTTGCACGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAACGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGAAAC-TGATCCAG--TGTG-CCACACT---GG--TC--ACTGGGGATTGGGCTTGC---TTGGGGCAG-------TATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGAC---TTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-----------------------------GGCCGCTGACCGTCAT-TAGGTGCTTTG--ATTGGGGTTTTTCAGT-CTAGCC------AATATAAGGCTGGGTTGG-AGACTTTGGGGC-TGCA-----------------------------------TTTGATGACCGTGCATG-GTGCA----TGATTGGACCTCTTCAACTA Cantharellus_californicus_DQ974688_ ???????????????????????????????????????????????????????????????CCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGGAAAC-TGATCCAG--TGTA-CCC-ACT---GG--TC--ACTGGGGATTGGGCTTGC---TTGGGGTAA-------TGTT--T-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGCTATATATTATTGTATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TTTTCAGTCCTAGCC------AACAAAAGGCTGGGTT---GGACTTTGGGGC-TGCA-TTGGG--CGT--AGGGCAGCTCTG-TTCGTGGCGTCCAATGACCG-------TTTCA----TGATTGGA---CTTCAACTA Cantharellus_altipes_JN944018_ AGTTGCATGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCCGAGGATGAAGACAAGGGTATCTCTGGC?GAGGGTAATGAGAA?-TGATCCAG--TGCG-CCC-ACTT--GGGCTTATACTGGGGATTGGGCTTGC---TTGGGGTAATGC-----GTT--A-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGAGGACTTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG-TCTTCAGT-CTAGCC------AACC-AAGGCTAGGTT---GGACTTTGGGG?-TGCA-CTGGGGGCGT--AGGGCA?CTCTG-TTCG?GGCGTCCGATGACCGTTCATG-GTGCA----?GATTGGA---CTTCAACTA Cantharellus_amethysteus_JN944020__ AGTTGCACGGCACTTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAAAAC-TGATCCAGTTTGTG--CC-ACACTTGG--TC--ACTGGGGATTGGGCTTGC---TTGGGGCAA-------TATC--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATG-----GCAAGCCCTTGACCGTCA--TAGGTGCTTTG--ATTGGGG--TTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGG-AGACTTTGGGGC-TGCA-CTGGGGGCGT--AGGGCAGCTCTGTTTCGTGGCGTCCGATGACCG-TCGTG-GTGCA----TGATTGGAC--CTTCAATCT Cantharellus_cinnabarinus_JN944016_ AGTTGCACGGCACCTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGCGGATGAAGACAAGGGTATCTCTGGTTGAGGGCAATGAAAAT-CGATCCAGGCTGTGAACCAGC------------CCTGGGGATTGGGCTTGC---TTTGGGGGGAGGCCCTCACC--GGCTTTTCCT--GGCTTGCCTCAAAATCAC--TGTTGTGTAGATTGAA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGCT-------TT--TAAGGAAAAGCAAGCCCTTGACCGTCA--TAGGTGTCTTG--ATTGGGG--TTTCGAT-CTGGCC------AAC--AAGGCTGGGTT---GAACTTTGGGGC-TGCA-CTGGGGGCGT--AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCGTG-GTGCA----TGATTGGA---CTTCAGCTA Cantharellus_tabernensis_JN944013_ AGTTGCACTGCACCTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGCAACGAGAAC-TGATCCAGGCTGGCTTCT-TTTTTCGG--CCG-CCTGGGGATTGGGCTTGC---TCGGGGAGCGTGATG-TCTC--T-----CTCT--GGCTTGCCTTAAAATCATCGTTGTGCGAGGATTGA-----CTTTCAAGCAATGCATT-GGGGACGCAGGTTCT-GCGC--------AGAGTTTG--AAAGCAAGCCCTTGACCGTCATATAGATGTCTTG--ATTGTGGGGGTTCGGT-CTGGCCGATCGGAAATGAAGGCCTGGTT---GAGCTCTGGGGC-TGCACTTGGGGGCGT--AGGGCAGCTCTGTCTCGTGGCGTCCGATGACCCGTCATC---GCGTGCATGATTGGA---CTTCAATCT Cantharellus_appalachiensis_HQ386220_ AGTTGCATGGCACTTCTAATCTAACAGATAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGTAATGAGAAC-TGATCCAG--TGTCTACC-GTT---GG--TTA-GCTGGGGATTGGGCTTGC---TTGGGGTAA-------TATT--G-----CTCT--GGCTTGCCTTAAAATCAA-GCGTTGTGTGGATTGGA----CTTTCAAGC-ATGCATT-GGGGACGCAGGCTCT-GCGC------------TATT-----TCAAGCCCTTGACCGTCA--TAGGTGCGCAG--ATTGGGG-TTTTCAGT-CTAGCC------AAC--AAGGCTGGGTTGAAGGACTTTGGGGC-TGCA-TTGGGGGCGCA-AGGGCAGCTCTG-TTCGTGGCGTCCGATGACCG-TCATG-ATGCATGCGTGATTGGA???????????? Cantharellus_appalachiensis_HQ416695_ AGTTGCACTGCACCTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGCAACGAGAAC-TGATCCAGGCTGGCTTCTTTTTTTCGG--CCG-CCTGGGGATTGGGCTTGC---TTGGGGAGCGTGA---TGTC--T-----CTCT--GGCTTGCCTTAAAATCATCGTTGTGCGAGGATTGGA----CTTTCAAGCAATGCATT-GGGGACGCAGGTTCT-GCGC--------AGAGTTTG--AAAGCAAACCCTTGACCGTCATATAGATGTCTTG--ATTGTGGGGGTTCGGT-CTGGCCCGACGAAAACGAAGGCCTGGTT---GAGCTCTGGGGC-TGCACTTGGGGGCGT--AGGGCAGCTCTG-CTCGTGGCGTCCGATGACCG-TCACGCGTGCA----TGATTGGA---CTTCAACTG Cantharellus_appalachiensis_HQ416694_ AGTTGCACTGCACCTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAAACGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGAGGATGAAGACAAGGGTATCTCTGGCTGAGGGCAACGAGAAC-TGATCCAGGCTGGCTTCTTTTTTTCGG--CCG-CCTGGGGATTGGGCTTGC---TTGGGGAGCGTGA---TGTC--T-----CTCT--GGCTTGCCTTAAAATCATCGTTGTGCGAGGATTGGA----CTTTCAAGCAATGCATT-GGGGACGCAGGTTCT-GCGC--------AGAGTTTG--AAAGCAAACCCTTGACCGTCATATAGATGTCTTG--ATTGTGGGGGTTCGGT-CTGGCCCGACGAAAACGAAGGCCTGGTT---GAGCTCTGGGGC-TGCACTTGGGGGCGT--AGGGCAGCTCTG-CTCGTGGCGTCCGATGACCG-TCACGCGTGCA----TGATTGGA---CTTCAACTG Cantharellus_guyanensis_JQ915099_ AGTTGCAC-GCATCTCTAATCTAACACCAAGCGAATCATCGAGTCTTTGAACGCAGATGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGCGGATGAAGACAAGGGTATCTCTGGCTGAGAGCAATGGAAGT-TGATCCAA--GGTC-----TTTTGTGG----GCCTTGGGGAGTGAGCTTGCCTTTTGGGACTT-------GGTT--T-----CTCTGGGGCTTGCTTTAAAATCATCAGGTTGTG---------------TTCAAGC-----ATT-GGGGACGCAGGCTTTAGCTCT-----------TTTG----AAGTGGCCCTTGACCGTTA--TTGGTGTTTTGGAATTGA---CCTTGGGT-CT--------------------TGGGTC---------TGGGGCTTGCA-TTGGGGACGT--AGGGCAGCTCTGTGTGGTGGCGTCCATTGACCG-TCATG-ATGCT----TGATTGGA---CTTCCACGA Cantharellus_guyanensis_JQ915096 AGTTGCAC-GCATCTCTAATCTAACACCAAGCGAATYATCGAGTCTTTGAACGCAGATGGCACCCTTCCAGTCCATTCCAAAGCGGTGGCGGCGGAYGAAGACAAGGGTATCTCTGGCTGAGAGCAATGGAAGT-TGATCCAA--GGTC-----TTTTGTGG----GCCTTGGGGAGTGAGCTTGCCTTTTGGGACTT-------GGTT--T-----CTCTGGGGCTTGCTYTAAAATCATCAGGTTGTG---------------TTCRAGC-----ATT-GGGGACGYAGGCTTTAGCTCT-----------TTTG----AAGTGGCCCTTGACCGTTA--TTGGTGTTTTGGAATTGA---CCTTGGGT-CT--------------------TGGGTC---------TGGGGCTTGCA-TTGGGGACGT--AGGGCAGCTCTGTGTGGTGGCGTCCATTGACCG-TCATG-ATGCT----TGATTGGA---CTTCCACGA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Leacock_Cantharellus_ITS_Matrix') = unord: 1 - 502; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Leacock_Cantharellus_ITS_Matrix') = universal: 1 - 502; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Leacock_Cantharellus_ITS_Matrix') = 'Jukes-Cantor': 1 - 502; END; BEGIN TREES; Title 'Leacock_Cantharellus_ITS_Tree'; LINK Taxa = Taxa; TRANSLATE [0] 1 Cantharellus_chicagoensis_KP639201, [1] 2 Cantharellus_chicagoensis_KP639197, [2] 3 Cantharellus_chicagoensis_KP639198, [3] 4 Cantharellus_chicagoensis_KP639199, [4] 5 Cantharellus_chicagoensis_KP639200, [5] 6 Cantharellus_roseocanus_KP639205, [6] 7 Cantharellus_aff_roseocanus_KP639204, [7] 8 Cantharellus_sp_KP639202, [8] 9 Cantharellus_sp_KP639206, [9] 10 Cantharellus_cibarius_KP639203, [10] 11 Cantharellus_cascadensis_AY041180, [11] 12 Cantharellus_cascadensis_AY041181, [12] 13 Cantharellus_cibarius_AY041175_, [13] 14 Cantharellus_cibarius_AY041176_, [14] 15 Cantharellus_flavus_JX030457_, [15] 16 Cantharellus_flavus_JX030436, [16] 17 Cantharellus_flavus_JX030467, [17] 18 Cantharellus_phasmatis_JX030465, [18] 19 Cantharellus_phasmatis_JX030460, [19] 20 Cantharellus_phasmatis_JX030462, [20] 21 Cantharellus_cibarius_JX030469, [21] 22 Cantharellus_formosus_AY041184, [22] 23 Cantharellus_formosus_AF044695, [23] 24 Cantharellus_roseocanus_AY041173, [24] 25 Cantharellus_roseocanus_AY041174, [25] 26 Cantharellus_roseocanus_AYO41172, [26] 27 Cantharellus_tenuithrix_JN944017, [27] 28 Cantharellus_subalbidus_AY041179, [28] 29 Cantharellus_subalbidus_AYO41178_, [29] 30 Cantharellus_lewisii_JN944021_, [30] 31 Cantharellus_californicus_DQ974688_, [31] 32 Cantharellus_altipes_JN944018_, [32] 33 Cantharellus_amethysteus_JN944020__, [33] 34 Cantharellus_cinnabarinus_JN944016_, [34] 35 Cantharellus_tabernensis_JN944013_, [35] 36 Cantharellus_appalachiensis_HQ386220_, [36] 37 Cantharellus_appalachiensis_HQ416695_, [37] 38 Cantharellus_appalachiensis_HQ416694_, [38] 39 Cantharellus_guyanensis_JQ915099_, [39] 40 Cantharellus_guyanensis_JQ915096; TREE Cantharellus_ITS = ((39:0.00000130927931855375,40:0.00000130927931855375)100:0.11666809037060696,((35:0.03677892174232964,(37:0.00000130927931855375,38:0.00000130927931855375)100:0.007019706409791083)100:0.11243460250201001,(34:0.10096375497458335,((22:0.0026979701202365274,23:0.00810194696814547)98:0.00000130927931855375,(((1:0.00000130927931855375,3:0.00000130927931855375)63:0.00000130927931855375,(2:0.00000130927931855375,(4:0.006380390195564555,5:0.00000130927931855375)86:0.00000130927931855375)62:0.00286429639911564)100:0.02392765252973118,((32:0.03574621234399736,(30:0.04928715921149293,33:0.021562662156699924)65:0.013021310176253919)18:0.007139077974745032,(31:0.021903166088652365,(36:0.03142277820622722,(((11:0.00000130927931855375,12:0.00000130927931855375)88:0.005751434362569699,(28:0.00000130927931855375,29:0.00000130927931855375)58:0.00000130927931855375)48:0.0028599733226522153,(8:0.00000130927931855375,(7:0.00000130927931855375,(24:0.00000130927931855375,(25:0.00000130927931855375,(26:0.00000130927931855375,(6:0.00000130927931855375,((21:0.00000130927931855375,(13:0.00000130927931855375,14:0.00000130927931855375)65:0.0028691749394308993)28:0.00000130927931855375,((20:0.00000130927931855375,(18:0.00000130927931855375,19:0.00000130927931855375)30:0.00000130927931855375)90:0.005753403818941943,((9:0.00000130927931855375,27:0.027131488140380012)30:0.002874118988519669,(10:0.00000130927931855375,(16:0.00000130927931855375,(15:0.00000130927931855375,17:0.00000130927931855375)59:0.00000130927931855375)48:0.00000130927931855375)84:0.002999824735785659)11:0.00000130927931855375)30:0.0060333042322000515)13:0.0029975584258165925)21:0.00000130927931855375)6:0.00000130927931855375)4:0.00000130927931855375)46:0.003001179277019883)5:0.00000130927931855375)11:0.00000130927931855375)29:0.00000130927931855375)88:0.026337402002175773)17:0.0038169282668251312)28:0.009963500657234338)48:0.02049948226729298)76:0.054665668024218704)69:0.03867870989759916)100:0.11666809037060696); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1445526692693; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2686761466233168319; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5739431688969397990; mqVersion 304; checksumv 0 3 2959079753 null getNumChars 502 numChars 502 getNumTaxa 40 numTaxa 40 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 373433.0 sumSquares -2.3058430092136915E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 271; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1286 621; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2686761466233168319 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1157.1445459437952.3376882455599835071; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 549; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5739431688969397990 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 307; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 549; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;