#NEXUS [written Fri Feb 01 10:22:39 CET 2019 by Mesquite version 3.40 (build 877) at mdk-crou-006.cbs-niob.local/10.136.73.120] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS Massarina_lacustris_AF250831 Roussoella_acaciae_KP004469 Roussoella_percutanea_KF322117 Roussoella_percutanea_KF322118 Roussoella_sp._KF443407 Roussoella_mexicana_CPC_25355 Roussoella_neopustulans_KJ474833 Roussoella_japanensis_KJ474829 Roussoella_verrucispora_KJ474832_ Roussoella_pustulans_KJ474830 Roussoella_intermedia_KJ474831 Roussoella_chiangraina_KJ474828 Roussoella_siamensis_KJ474837 Roussoella_thailandica_KJ474838 Roussoella_nitidula_KJ474834 Roussoella_nitidula_KJ474835 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=665; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Massarina_lacustris_AF250831 --------------------------------cattaaacatacatggtcgtcggccactcccggggcaggctgggaccatcgtttcgacgatggtccccgtccgcccccggcgggtgctcagccgtcg---ctctttaccttgactatgcgcaccttttgttgtttcctcggcaggcct-cctgccgct-tggaacccca-taaac-ctttgtata--agcattaaacttctgaaacaatacaaaattacttacaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatctaaaccctcaagccttctgggtattgtaccgcctccgcgcggcactctgcccggcttggtgttgggcgtctgtcccgcctc--gcgtgcggactcgccccaaatgcattggcagc---ggcc-ttccagcttctcgcgcagcacattgcgtcccga-ggtatggcg-agggcgagcgtccagcaagcaaccccacaa--tttgacctcggatcagg-------------------------------------- Roussoella_acaciae_KP004469 taactgttccgtaggtgaaccttcggaaggatcattactgaaatgcagcgggtctcaggc------------------------------------------------atgcctgagcctgcatacatgc-attacaccctttgactttgagcaccgt---acgtttcctcggcaggttcgcctgccagc-ggggacccccataaactctttgtagtt-ggcagtatttgtctgaa-aacaatgataataatcacaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccttggggcatgcctgttcgagcgtcatttaaaccctcaa-------------------------------------gcctagcttggtgttgggtgcttgtcccccc----------ggactcacctcaaagacattggcagcccgcatc-cgccggccgtgagcgcagcccagtcgcgcc???????????????????????????????????????????????????????????????????????????????????------------------ Roussoella_percutanea_KF322117 ------------------------------atcattatcgaaatgcagcgggggcagacagctcc---agg-----------------------------------ccgccggcccccgcgtacacgcat--tatccacccttgactttgagcaccgt---ttgtttcctcggcggggacgcccgccagc-gaggaccccattgaaccctttgcagt--agcagtatttgtctgaa-aaaaaacacaaaaatcacaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccttggggcatgcctgttcgagcgtcatttaacccttcaa-------------------------------------gctcagcttggtgttgggtgcttgtcccgcctcccgcgcggcgactcacctcaaagtcattggcagcccgcacc-cgccggccatgagcgcagcacagtcgcgctccg-ggctccggcagggtcggctccccataagcaaccccccaaa--attgacc------------------------------------------------ Roussoella_percutanea_KF322118 ------------------------------atcattatcgaaatgcagcgggggcagacagctcca--agg-----------------------------------ccgccggcccccgcgtacacgcat--tatccacccttgactttgagcaccgt---ttgtttcctcggcggggacgcccgccagc-gaggaccccattgaaccctttgcagt--agcagtatttgtctgaaaaaaaaacacaaaaatcacaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccttggggcatgcctgttcgagcgtcatttaacccttcaa-------------------------------------gctcagcttggtgttgggtgcttgtcccgcctcccgcgcggcgactcacctcaaagtcattggcagcccgcacc-cgccggccatgagcgcagcacagtcgcgctccg-ggctccggcagggtcggctccccataagcaaccccccaaa--attgacc------------------------------------------------ Roussoella_sp._KF443407 ------------------------------atcattaccgtaacgcggcggtc--------cggcaaccgc-----------------------------------aaggaagtcggccgccacacgcgt--ttatcacccttgactttgagcacctt---tcgtttcctcggcgggttcgcccgccagc-gaggaccccc-caaaccctttgtaat--agcaatatttgtctgaa-aaaca-accaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaacccctcaa-------------------------------------gcctagcttggtattgggtgcttgtcccgcctctcgcgcggcgactcacctcaaagtcattggcagcccgcatctcgccggccgtgagcgcagcacagacgcgctctt-ggcaacggt-ggatcggctctccaaaagcttatttcaacc--actgacc------------------------------------------------ Roussoella_mexicana_CPC_25355 --------------------------------???????????????????????????????????????????????????????????????????????????????????ggccgccacacgcgttttttccacccttgattttgagcacct----tcgtttcctcggcgggttcgcccgccaat-gaggaccccctcaaactctttgtaat--agcaatatttgtctga--aaacaaaacaataattaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaaaccctcaa-------------------------------------gcctagcttggtattgggtgcttgtcccgcctct-gcgcggcgactcacctcaaagtcattggcagcccgcatc???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Roussoella_neopustulans_KJ474833 ----------------------------ggatcattactgt-----------------------------------------------------------------aacgtttgggctccggtcctgcgt--ttatcacccttgactttgagcacct----ttgtttcctcggcgggttcgcccgccagc-gaggaccccc-taaacactttgtaat--agcaatatttgtctgaa-aaacataccaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaaaccctcaa-------------------------------------gctcagcttggtgttgggtgcttgtcccgcctcc-gtgcggcgactcacctcaaaatcagtggcagcccgcatc-cgccggccgtgagcgcagcacagtcgcgcccta-ggccccggc-aggtcggctctccaaaagcccattttaccacttttgacctcggatcaggtagggatacccgctgaacttaa---------------- Roussoella_japanensis_KJ474829 ----------------------------ggatcattaccat-gtcaacgcaccgcgagcgttgccgcatcgg---------atggacatgtcctccccgaatacactgcggcagcacccacggtctgcgt--gcttcacccttgaatttgagcaccgtt--tcgtttcctcggcgggtccgcccgccagc-gaggacaccc-caaacgctttgcagt--agcagtttttgtctgaacaaacatacgaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaccccctcaa-------------------------------------gcccagcttggtgttgggtgcttgtcccgccttccgcgcggcgactcacctcaaaatcagtggcagcccgcatc-cgccggccgtgagcgcagcacagacgcgctctg-ggtccgggc-agatcggctctccagaagctccttctaccacttttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcgg Roussoella_verrucispora_KJ474832_ ----------------------------ggatcattaccatcgtcaacgcaccgtccgcgttgtcgccccg------------------------------------gcggcagcgcgtccggtctgcgt--gtctcacccttgaatttgagcaccttt--tcgtttcctcggcgggtccgcccgccagc-gaggaccccc-caaacgctttgcagt--agcagtttttgtctgaacaaatataccaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttacctcctcaa-------------------------------------gcccagcttggtgttgggtgcttgtcccgcctcccgtgcggcgactcacctcaaaatcagtggcagcccgcatc-cgccggccgtgagcgcagcacagacgcgcccaa-ggtcccggc-gggtcggctctccagaagccccttctaccacttttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcgg Roussoella_pustulans_KJ474830 ----------------------------ggatcattatcat-gttaacgcctcgtctaggcatccagcagg------------------------cacttgtgcctgctggatgactggtcgggctgcgt--gtatcacccttgaatttgagcacctt---ttgtttcctcggcgggttcgcccgccagc-gaggaccccc-taaacgctttgcagt--agcagtttttgtctgaa-aaacataccaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaacccctcaa-------------------------------------gcccagcttggtgttgggtgcttgtcccgcctcc-gcgcggcgactcacctcaaaatcagtggcagcccgcatc-cgccggccgtgagcgcagcacaaacgcgcccta-ggacccgac-ggatcggctctccaaaagcccattttaccacttttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcgg Roussoella_intermedia_KJ474831 ----------------------------ggatcattatcat-gttaacgcctcgtctatccgtgcgtaggg-----------------------cgagcaatcccctgcgtatgggtagccgggctgcgt--gtatcacccttgaatttgagcacctt---ttgtttcctcggcgggttcgcccgccagt-gaggaccccc-taaacgctttgcagt--agcagtttttgtctgaa-aaacataccaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaacccctcaa-------------------------------------gcctagcttggtgttgggtgcttgtcccgcctcc-gcgcggcgactcacctcaaaatcagtggcagcccgcatc-cgccggccgtgagcgcagcacaaacgcgcccaa-ggacccgac-ggatcggctctccaaaagcccattttaccacttttgacctcggatcaggtagggatacccgctgaacttaagcatatcaataagcgg Roussoella_chiangraina_KJ474828 ----------------------------ggatcattactgtaa--------------------------------------------------------------------------gcgttttaggcgc-attactacccttgactttgagcaccttt--tcgtttcctcggcgggtccgcccgccagc-gaggacccca-taaactctttgcagttgagcagtatttgtctgag-aaacataccaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaaaccctcaa-------------------------------------gcccagcttggtgttgggtgcttgtcccgcctcccgcgcggcgactcacctcaaaatcagtggcagcccgcatc-cgccggccgtgagcgcagcacagtcgcgcccta-ggccccggc-ggatcggctctccagaagcccc????????????????????????????????????????????????????????????????? Roussoella_siamensis_KJ474837 ----------------------------ggatcattacctagtaccgcta------------tgcataggg-------------------------------------gggacacccccccgccgcaggtatttaccacccttgactttgagcaccttt--ttgtttcctcggcaggttcgcctgccagcagaggacccta-taaacacttgtagtt--tgcagtatttgtctga--aaacataccaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccctcggtattccgtggggcatgcctgttcgagcgtcatttaaaccctcaa-------------------------------------gctcagcttggtattgggtgcttgtcccgcctct-gcgcggcgactcacctcaaaaacagtggcagcccgcatc-cgccggccgtgagcgcagcacagtcgcactcaacagtcttggc-aggtcggctaaccaaaagcttacttttcttattttgacctcggatcaggtagggatacccgctgaacttaagcatatcata------ Roussoella_thailandica_KJ474838 ----------------------------ggatcattactgaataaaacaagccgccgagtcctgcacccac-------------------------------------caggcagttcacggcggggcgtttttctcaccctcgactttgagcacct----ttgtttcctcggcgggtccgcccgccaat-gaggacccaa-cgaaccctttgcagt--agcagtttttgtctgaa-aaata-accaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgcccttcggtattccgtagggcatgcctgttcgagcgttatttaacccctcaa-------------------------------------gctcagcttggtgttgggtgcttgtcccgcctcctgcgcggcgactcacctcaaatacagtggcagcccgcatt-cgccggccgtgagcgcagcacaaacgcgccca--ggtcctggc-gggtcggctctccagaagcccatttttcta-tgttaacctcggatcaggtagggatacccgctgaacttaagc-------------- Roussoella_nitidula_KJ474834 ----------------------------ggatcattatcgaaacagctcgcccgccagtcccct------------------------------------------aaaaagggctgtcgggcggtgcgt--tcatcacccttgaattttagtacctt---ttgtttcctcggcgggttagcccgccaac-gaggacccaa-caaacatcttgcagt--agcagtttttgtctga--aattaaacaaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggcattccatagggcatgcctgttcgagcgttatttaaaccctcaa-------------------------------------gctcagcttggtgatgggtgcttgtctcgccttc-gcgcggtgactcacctcaaattcagtggcagcccgcatc-cgccggccgtgagcgcagcacaaacgcactca--agtctaggt-agatcggctctccaaaagcccattttccat--tttaacctcggatcaggtagggatacccgctgaactta----------------- Roussoella_nitidula_KJ474835 ----------------------------ggatcattatcgaaacagctcgcccgccagtcccct------------------------------------------aaaaagggctgtcgggcggtgcgt--tcatcacccttgaattttagtacctt---ttgtttcctcggcgggttagcccgccaac-gaggacccaa-caaacatcttgcagt--agcagtttttgtctga--aattaaacaaataatcaaaactttcaacaatggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccctttggcattccatagggcatgcctgttcgagcgttatttaaaccctcaa-------------------------------------gctcagcttggtgatgggtgcttgtctcgccttc-gcgcggtgactcacctcaaattcagtggcagcccgcatc-cgccggccgtgagcgcagcacaaacgcactca--agtctaggt-agatcggctctccaaaagccc?????????????????????????????????????????????????????????????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 665; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; OUTGROUP outgroups / only; exclude 1 - . / only; include combined / only; SET CRITERION = distance maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; DSet distance = p; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = RoussoellaITSuncorrectedp.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 file = RoussoellaITSuncorrectedpbs.tre format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0; DSet distance = k2p; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = RoussoellaITSkimura2p.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = RoussoellaITSkimura2pbs.tre; DSet distance = hky85; NJ breakties = random brlens = yes showtree = yes; Savetrees from = 1 to = 1 format = nexus brlens = yes maxdecimals = 6 file = RoussoellaITShky85.tre; Bootstrap nreps = 1000 search = nj; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = RoussoellaITShky85bs.tre; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = paraphyl; Pset gapmode = newstate; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; Savetrees format = nexus brlens = yes maxdecimals = 0 file = RoussoellaITSparsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = RoussoellaITSparsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = RoussoellaITSparsimonybootstrap.tre; Log stop = yes; END; BEGIN SETS; CHARSET combined = 107 - 423 460 - 617; TAXSET outgroups = 1; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 665; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 665; END; BEGIN TREES; Title 'Trees from "RoussoellaITSparsimony.trees"'; ID 0168a85d2cb51; LINK Taxa = Taxa; TRANSLATE [0] 1 Massarina_lacustris_AF250831, [1] 2 Roussoella_acaciae_KP004469, [2] 3 Roussoella_percutanea_KF322117, [3] 4 Roussoella_percutanea_KF322118, [4] 5 Roussoella_sp._KF443407, [5] 6 Roussoella_mexicana_CPC_25355, [6] 7 Roussoella_neopustulans_KJ474833, [7] 8 Roussoella_japanensis_KJ474829, [8] 9 Roussoella_verrucispora_KJ474832_, [9] 10 Roussoella_pustulans_KJ474830, [10] 11 Roussoella_intermedia_KJ474831, [11] 12 Roussoella_chiangraina_KJ474828, [12] 13 Roussoella_siamensis_KJ474837, [13] 14 Roussoella_thailandica_KJ474838, [14] 15 Roussoella_nitidula_KJ474834, [15] 16 Roussoella_nitidula_KJ474835; TREE First_of_five_equally_most_parsimonious_trees_from_the_Roussoella_ITS_phylogeny = ((((3:41,4:42):35,(((((8:14,9:7):16,(10:6,11:5):4):11,7:12):5,(12:23,((14:24,(15:0.0,16:0.0):33):21,13:24):17):12):11,(5:4,6:12):26):46):64,2:106):0.0,1:0.0); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1549012959561; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 980553347139332473; tell It; setDefaultOrder 15 14 0 1 4 5 8 2 3 6 7 9 11 10 12 13; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3118734120257687902; mqVersion 340; checksumv 0 3 639866754 null getNumChars 665 numChars 665 getNumTaxa 16 numTaxa 16 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 169246.0 sumSquares -3.043712772162076E21 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 609; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1581 895; setLocation -1839 72; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #980553347139332473 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #980553347139332473; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 972 823; setLocation -1839 72; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #980553347139332473 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0168a85d2cb51; toggleUseWeights off; endTell; setAssignedID 996.1549012914984.8000583904433204160; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 972 823; setLocation -1839 72; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter off; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.0,(2:106,((3:41,4:42):35,((5:4,6:12):26,((7:12,((8:14,9:7):16,(10:6,11:5):4):11):5,(12:23,(13:24,(14:24,(15:0.0,16:0.0):33):21):17):12):11):46):64):0.0);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; toggleShow bootstrapFrequency; toggleShow posteriorProbability; toggleShow consensusFrequency; toggleShow posteriorProbability; toggleShow bootstrapFrequency; setDigits 4; setThreshold ?; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3118734120257687902 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 972 823; setLocation -1839 72; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 16 6 1 1; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;