#NEXUS [written Fri Nov 06 09:41:55 COT 2015 by Mesquite version 3.04 (build 725) at PORTATIL-PC-DC/172.18.20.64] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Ganoderma_cupreum_DFP3896_AUS Ganoderma_cupreum_DFP4336_AUS Ganoderma_cupreum_GanoTK7_CMR Ganoderma_cupreum_HMAS130804_CHN Ganoderma_cupreum_HMAS99399_CHN Ganoderma_ecuadoriense_ASL799_ECU Ganoderma_ecuadoriense_PMC126_ECU Ganoderma_ecuadoriense_Poly24_ECU Ganoderma_fornicatum_BCRC35374_CHN Ganoderma_fornicatum_TNMF0009926_CHN Ganoderma_fornicatum_TNMF0010592_CHN Ganoderma_mastoporum_FRIM98_MYS Ganoderma_mastoporum_TNMF0018783_CHN Ganoderma_mastoporum_TNMF0018835_CHN Ganoderma_orbiforme_URM83334_BRA Ganoderma_orbiforme_URM83335_BRA Ganoderma_orbiforme_URM83336_BRA Ganoderma_perzonatum_SP445984_BRA Ganoderma_perzonatum_SP445985_BRA Ganoderma_sp_VPB202_BRA ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ML tree of Fungal Planet alignment 26Jun15 3.nex"'; DIMENSIONS NCHAR=562; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Ganoderma_cupreum_DFP3896_AUS TCGAGTTTTGAC-GGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_cupreum_DFP4336_AUS TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_cupreum_GanoTK7_CMR TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_cupreum_HMAS130804_CHN TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCAYGCCCTGCTCATCCA Ganoderma_cupreum_HMAS99399_CHN TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_ecuadoriense_ASL799_ECU TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_ecuadoriense_PMC126_ECU TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_ecuadoriense_Poly24_ECU TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_fornicatum_BCRC35374_CHN TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_fornicatum_TNMF0009926_CHN TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_fornicatum_TNMF0010592_CHN TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_mastoporum_FRIM98_MYS TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATYGTGCACGCCCTGCTCATCCA Ganoderma_mastoporum_TNMF0018783_CHN TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_mastoporum_TNMF0018835_CHN TCGAGTTTTGACTGGGTTGTAGCTGGCCTTACGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_orbiforme_URM83334_BRA TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_orbiforme_URM83335_BRA TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_orbiforme_URM83336_BRA TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_perzonatum_SP445984_BRA TCGAGTTCTGACTGGGTTGTAGCTGGCCTTCCGAGGCAT-GTGCACGCCCTGCTCATCCA Ganoderma_perzonatum_SP445985_BRA TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCAT-GTGCACGCCCTGCTCATCCA Ganoderma_sp_VPB202_BRA TCGAGTTTTGACTGGGTTGTAGCTGGCCTTCCGAGGCATTGTGCACGCCCTGCTCATCCA Ganoderma_cupreum_DFP3896_AUS CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTCGCGGAG Ganoderma_cupreum_DFP4336_AUS CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTCGCGGAG Ganoderma_cupreum_GanoTK7_CMR CTCTACACCTGTGCACTTACTGTGGGCTACGGATCGTGGAGC---GGGCTCTTTGCGGAG Ganoderma_cupreum_HMAS130804_CHN CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTYGCGGAG Ganoderma_cupreum_HMAS99399_CHN CTCTACACCTGTGCACTTACTGTGGGTTACGGATYGTGGAGC---GGGCTCTTYGCGGAG Ganoderma_ecuadoriense_ASL799_ECU CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGACC---GGGCTCTTTGCGGAG Ganoderma_ecuadoriense_PMC126_ECU CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGACC---GGGCTCTTTGCGGAG Ganoderma_ecuadoriense_Poly24_ECU CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGACC---GGGCTCTTTGCGGAG Ganoderma_fornicatum_BCRC35374_CHN CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTCGCGGAG Ganoderma_fornicatum_TNMF0009926_CHN CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTCGCGGAG Ganoderma_fornicatum_TNMF0010592_CHN CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTCGCGGAG Ganoderma_mastoporum_FRIM98_MYS CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTCGCGGAG Ganoderma_mastoporum_TNMF0018783_CHN CTCTACACCTGTGCACTTACTGTGGGTTACGGATYGTGGAGC---GGGCTCTTYGCGGAG Ganoderma_mastoporum_TNMF0018835_CHN CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTCGCGGAG Ganoderma_orbiforme_URM83334_BRA CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTTGCGGAG Ganoderma_orbiforme_URM83335_BRA CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTG?AG?---GGGCTCTTTGCGGAG Ganoderma_orbiforme_URM83336_BRA CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGAGC---GGGCTCTTTGCGGAG Ganoderma_perzonatum_SP445984_BRA CTCTACACCTGTGCACTTACTGTGGGCTTCAGATCGTAAAACGCGGGTCCCTTTACCGGG Ganoderma_perzonatum_SP445985_BRA CTCTACACCTGTGCACTTACTGTGGGCTTCAGATCGTGAAAC---GGGCCCTTTATCGGG Ganoderma_sp_VPB202_BRA CTCTACACCTGTGCACTTACTGTGGGTTACGGATCGTGGACC---GGGCTCTTTGCGGAG Ganoderma_cupreum_DFP3896_AUS CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_cupreum_DFP4336_AUS CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_cupreum_GanoTK7_CMR CTCGC-GAAGCGCCTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATTAGAATGT Ganoderma_cupreum_HMAS130804_CHN CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_cupreum_HMAS99399_CHN CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_ecuadoriense_ASL799_ECU CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATCAGAATGT Ganoderma_ecuadoriense_PMC126_ECU CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATCAGAATGT Ganoderma_ecuadoriense_Poly24_ECU CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATCAGAATGT Ganoderma_fornicatum_BCRC35374_CHN CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_fornicatum_TNMF0009926_CHN CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_fornicatum_TNMF0010592_CHN CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_mastoporum_FRIM98_MYS CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_mastoporum_TNMF0018783_CHN CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTTAAAAGTATTAGAATGT Ganoderma_mastoporum_TNMF0018835_CHN CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACRAACACTTTAAAAGTATTAGAATGT Ganoderma_orbiforme_URM83334_BRA CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATAAGAATGT Ganoderma_orbiforme_URM83335_BRA CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATAAGAATGT Ganoderma_orbiforme_URM83336_BRA CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATAAGAATGT Ganoderma_perzonatum_SP445984_BRA CTTGCGGGAGCGTGTCTGTGCCTGCG-TTTATCACAAACTCTAT-AAAGTATCAGAATGT Ganoderma_perzonatum_SP445985_BRA CTCGC-GGAGCGTGTCTGTGCCTGCG-TTTATCACAAACTCTAT-AAAGTATCAGAATGT Ganoderma_sp_VPB202_BRA CTTGT-GAAGCGCTTCTGTGCCTGCGTTTTATAACAAACACTTT-AAAGTATCAGAATGT Ganoderma_cupreum_DFP3896_AUS GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_cupreum_DFP4336_AUS GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_cupreum_GanoTK7_CMR GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_cupreum_HMAS130804_CHN GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_cupreum_HMAS99399_CHN GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_ecuadoriense_ASL799_ECU GTATTGCGATGTAACGCATCCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_ecuadoriense_PMC126_ECU GTATTGCGATGTAACGCATCCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_ecuadoriense_Poly24_ECU GTATTGCGATGTAACGCATCCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_fornicatum_BCRC35374_CHN GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_fornicatum_TNMF0009926_CHN GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_fornicatum_TNMF0010592_CHN GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_mastoporum_FRIM98_MYS GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_mastoporum_TNMF0018783_CHN GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_mastoporum_TNMF0018835_CHN GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_orbiforme_URM83334_BRA GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_orbiforme_URM83335_BRA GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_orbiforme_URM83336_BRA GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_perzonatum_SP445984_BRA GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_perzonatum_SP445985_BRA GTATTGCGATGTAACGCAT-CTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_sp_VPB202_BRA GTATTGCGATGTAACGCATCCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCA Ganoderma_cupreum_DFP3896_AUS TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_cupreum_DFP4336_AUS TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_cupreum_GanoTK7_CMR TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_cupreum_HMAS130804_CHN TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_cupreum_HMAS99399_CHN TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_ecuadoriense_ASL799_ECU TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_ecuadoriense_PMC126_ECU TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_ecuadoriense_Poly24_ECU TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_fornicatum_BCRC35374_CHN TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_fornicatum_TNMF0009926_CHN TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_fornicatum_TNMF0010592_CHN TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_mastoporum_FRIM98_MYS TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_mastoporum_TNMF0018783_CHN TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_mastoporum_TNMF0018835_CHN TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_orbiforme_URM83334_BRA TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_orbiforme_URM83335_BRA TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_orbiforme_URM83336_BRA TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_perzonatum_SP445984_BRA TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_perzonatum_SP445985_BRA TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_sp_VPB202_BRA TCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCAT Ganoderma_cupreum_DFP3896_AUS CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_cupreum_DFP4336_AUS CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_cupreum_GanoTK7_CMR CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_cupreum_HMAS130804_CHN CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_cupreum_HMAS99399_CHN CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_ecuadoriense_ASL799_ECU CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_ecuadoriense_PMC126_ECU CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_ecuadoriense_Poly24_ECU CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_fornicatum_BCRC35374_CHN CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_fornicatum_TNMF0009926_CHN CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_fornicatum_TNMF0010592_CHN CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_mastoporum_FRIM98_MYS CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_mastoporum_TNMF0018783_CHN CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_mastoporum_TNMF0018835_CHN CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_orbiforme_URM83334_BRA CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_orbiforme_URM83335_BRA CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_orbiforme_URM83336_BRA CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_perzonatum_SP445984_BRA CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_perzonatum_SP445985_BRA CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_sp_VPB202_BRA CGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGT Ganoderma_cupreum_DFP3896_AUS CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_cupreum_DFP4336_AUS CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_cupreum_GanoTK7_CMR CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGCGGGCTTGGACTTGGAGGCTT Ganoderma_cupreum_HMAS130804_CHN CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_cupreum_HMAS99399_CHN CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_ecuadoriense_ASL799_ECU CATGAAATCTTCAATCTACAAGCTTTTTAAATGGTTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_ecuadoriense_PMC126_ECU CATGAAATCTTCAATCTACAAGCTTTTTAAATGGTTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_ecuadoriense_Poly24_ECU CATGAAATCTTCAATCTACAAGCTTTTTAAATGGTTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_fornicatum_BCRC35374_CHN CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_fornicatum_TNMF0009926_CHN CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_fornicatum_TNMF0010592_CHN CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_mastoporum_FRIM98_MYS CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_mastoporum_TNMF0018783_CHN CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_mastoporum_TNMF0018835_CHN CATGAAATCTTCAACCTACAAGCTTTTT-AATGGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_orbiforme_URM83334_BRA CATGAAATCTTCAACCTACAAGCTTTTTAAATGGTTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_orbiforme_URM83335_BRA CATGAAATCTTCAACCTACAAGCTTTTTAAATGGTTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_orbiforme_URM83336_BRA CATGAAATCTTCAACCTACAAGCTTTTTAAATGGTTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_perzonatum_SP445984_BRA CATGAAATCTTCAACCTGCAAGCTTTTT---GTGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_perzonatum_SP445985_BRA CATGAAATCTTCAACCTACAAGCTTTTG----CGGTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_sp_VPB202_BRA CATGAAATCTTCAATCTACAAGCTTTTTAAATGGTTTTGTAGGCTTGGACTTGGAGGCTT Ganoderma_cupreum_DFP3896_AUS GTCGG-CTTGATTGGTCGGCTCCTCTCAAATACATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_cupreum_DFP4336_AUS GTCGGTCTTTATTGGTCGGCTCCTCTCAAATGCATTATCTTGGTTCCTTGCGGATCGGCT Ganoderma_cupreum_GanoTK7_CMR GTCGGTCTTTATTGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_cupreum_HMAS130804_CHN GTCGGCCTTTATTGGTCGGCTCCTCTCAAATACATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_cupreum_HMAS99399_CHN GTCGGYCTTTAYTGGTCGGCTCCTCTCAAATRCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_ecuadoriense_ASL799_ECU GTCGGCCTTTATTGGTCGGCTCCTCTCAAACGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_ecuadoriense_PMC126_ECU GTCGGCCTTTATTGGTCGGCTCCTCTCAAACGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_ecuadoriense_Poly24_ECU GTCGGCCTTTATTGGTCGGCTCCTCTCAAACGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_fornicatum_BCRC35374_CHN GTCGGTCTTTATTGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_fornicatum_TNMF0009926_CHN GTCGGCCTTTATTGGTCGGCTCCTCTCAAATACATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_fornicatum_TNMF0010592_CHN GTCGGTCTTTATTGGTCGGCTCCTCTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_mastoporum_FRIM98_MYS GTCGGTCTTTATTGGTCGGCTCCTYTCAAATGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_mastoporum_TNMF0018783_CHN GTCGGYCTTTAYTGGTCGGCTCCTCTCAAATRCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_mastoporum_TNMF0018835_CHN GTCGGCCTTTATTGGTCGGCTCCTCTCAAATACATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_orbiforme_URM83334_BRA GTCGGTCTTTATTGGTCGGCTCCTCTCAAACGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_orbiforme_URM83335_BRA GTCGG?CTTTATTGGTCGGCTCCTCTCAAACGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_orbiforme_URM83336_BRA GTCGGTCTTTATTGGTCGGCTCCTCTCAAACGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_perzonatum_SP445984_BRA GTCGGCCATTCTTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_perzonatum_SP445985_BRA GTCGGCCGTTCTTGGTCGGCTCCTCTTAAATGCATTAGCTTGGTTCCTTGCGAATCGGCT Ganoderma_sp_VPB202_BRA GTCGGCCTTTATTGGTCGGCTCCTCTCAAACGCATTAGCTTGGTTCCTTGCGGATCGGCT Ganoderma_cupreum_DFP3896_AUS TGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTCG Ganoderma_cupreum_DFP4336_AUS TGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTCG Ganoderma_cupreum_GanoTK7_CMR CGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAATCG Ganoderma_cupreum_HMAS130804_CHN TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAATCG Ganoderma_cupreum_HMAS99399_CHN TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGYTTTTGGGCGAGCTTCTAATAG Ganoderma_ecuadoriense_ASL799_ECU TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAATTG Ganoderma_ecuadoriense_PMC126_ECU TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAATTG Ganoderma_ecuadoriense_Poly24_ECU TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAATTG Ganoderma_fornicatum_BCRC35374_CHN TGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTGG Ganoderma_fornicatum_TNMF0009926_CHN TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAATCG Ganoderma_fornicatum_TNMF0010592_CHN TGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTCG Ganoderma_mastoporum_FRIM98_MYS TGTCGGTGTGATAATGTCTACGCCGCGACCGAGAAGCGTTTTTGGGCGAGCTTCTAGTCG Ganoderma_mastoporum_TNMF0018783_CHN TGTCGGTGTGATAATGTCTACGCCGSGACCGTGAAGCGYTTTTGGGCGAGCTTCTAATMG Ganoderma_mastoporum_TNMF0018835_CHN TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAATCG Ganoderma_orbiforme_URM83334_BRA TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGTGAGCTTCTAATCG Ganoderma_orbiforme_URM83335_BRA TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGTGAGCTTCTAATCG Ganoderma_orbiforme_URM83336_BRA TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGTGAGCTTCTAAT?G Ganoderma_perzonatum_SP445984_BRA C-TCGGTGTGATAATGTCTACACTGCGACCGTGAAGCGTTT---GGCGAGCTTCTAACTG Ganoderma_perzonatum_SP445985_BRA C-TCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTCT---GGCGAGCTTCTAACCG Ganoderma_sp_VPB202_BRA TGTCGGTGTGATAATGTCTACGCCGCGACCGTGAAGCGTTTTTGGGCGAGCTTCTAA??? Ganoderma_cupreum_DFP3896_AUS TCTCTGTATAGAGACAATCTTA Ganoderma_cupreum_DFP4336_AUS TCTCTGTATAGAGACAATCTTA Ganoderma_cupreum_GanoTK7_CMR TCTCAGTATAGAGACAATCTTA Ganoderma_cupreum_HMAS130804_CHN TCTCTGTATAGWGACAATCTTA Ganoderma_cupreum_HMAS99399_CHN TCTCTGTATAGAGACAATCTTA Ganoderma_ecuadoriense_ASL799_ECU TCTCAGTATGGAGACAATATTA Ganoderma_ecuadoriense_PMC126_ECU TCTCAGTATGGAGACAATATTA Ganoderma_ecuadoriense_Poly24_ECU TCTCAGTATGGAGACAATATTA Ganoderma_fornicatum_BCRC35374_CHN TCTCTGTATAGAGACAATCTTA Ganoderma_fornicatum_TNMF0009926_CHN TCTCTGTATAGWGACAATCTTA Ganoderma_fornicatum_TNMF0010592_CHN TCTCTGTATAGAGACAATCTTA Ganoderma_mastoporum_FRIM98_MYS TCTCTGTATAGAGACAATCTTA Ganoderma_mastoporum_TNMF0018783_CHN TCTCTGTATAGWGACAATCTTA Ganoderma_mastoporum_TNMF0018835_CHN TCTCTGTATAGTGACAATCTTA Ganoderma_orbiforme_URM83334_BRA TCTCAGTATGGAGACAATATTA Ganoderma_orbiforme_URM83335_BRA TCTCAGTATGGAGACAATATTA Ganoderma_orbiforme_URM83336_BRA TCTCAGTATGGAGACAATATTA Ganoderma_perzonatum_SP445984_BRA TCTCAGT-TGGAGACAACTTTA Ganoderma_perzonatum_SP445985_BRA TCTCAGT-TGGAGACAGCTTTA Ganoderma_sp_VPB202_BRA ?????????????????????? ; END; BEGIN TREES; Title 'Trees from "ML tree of Fungal Planet alignment 26Jun15 3.nex"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Ganoderma_cupreum_DFP3896_AUS, [1] 2 Ganoderma_cupreum_DFP4336_AUS, [2] 3 Ganoderma_cupreum_GanoTK7_CMR, [3] 4 Ganoderma_cupreum_HMAS130804_CHN, [4] 5 Ganoderma_cupreum_HMAS99399_CHN, [5] 6 Ganoderma_ecuadoriense_ASL799_ECU, [6] 7 Ganoderma_ecuadoriense_PMC126_ECU, [7] 8 Ganoderma_ecuadoriense_Poly24_ECU, [8] 9 Ganoderma_fornicatum_BCRC35374_CHN, [9] 10 Ganoderma_fornicatum_TNMF0009926_CHN, [10] 11 Ganoderma_fornicatum_TNMF0010592_CHN, [11] 12 Ganoderma_mastoporum_FRIM98_MYS, [12] 13 Ganoderma_mastoporum_TNMF0018783_CHN, [13] 14 Ganoderma_mastoporum_TNMF0018835_CHN, [14] 15 Ganoderma_orbiforme_URM83334_BRA, [15] 16 Ganoderma_orbiforme_URM83335_BRA, [16] 17 Ganoderma_orbiforme_URM83336_BRA, [17] 18 Ganoderma_perzonatum_SP445984_BRA, [18] 19 Ganoderma_perzonatum_SP445985_BRA, [19] 20 Ganoderma_sp_VPB202_BRA; TREE ML_tree = (18:0.019866,19:0.011008,(3:0.004308,(((20:0.0,(8:0.0,(6:0.0,7:0.0):0.0):0.0):0.008815,(16:0.0,(17:0.0,15:0.0):0.0):0.003435):0.009196,(((10:0.0,4:0.0):0.0,(14:0.0,13:0.0):0.0):0.005579,(5:0.001924,(9:0.001888,((2:0.001886,11:0.0):0.0,(12:0.0,1:0.003815):0.0):0.0):0.003945):0.0):0.00608):0.009409):0.06048); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Fungal Planet alignment 26Jun15 3.nex"') = unord: 1 - 562; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Fungal Planet alignment 26Jun15 3.nex"') = universal: 1 - 562; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "ML tree of Fungal Planet alignment 26Jun15 3.nex"') = 'Jukes-Cantor': 1 - 562; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1446820916018; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2959504391605761203; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1033508770915987681; mqVersion 304; checksumv 0 3 903261188 null getNumChars 562 numChars 562 getNumTaxa 20 numTaxa 20 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 278130.0 sumSquares -1.1529215046068466E20 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 682; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2959504391605761203 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2959504391605761203; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 610; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2959504391605761203 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 948.1446820502754.1363261928279419288; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 610; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1033508770915987681 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 610; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;