#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=39; TAXLABELS Glaucidium_palmatum Aconitum_anthora Aconitum_lycoctonum Aconitum_napellus Actaea_cordifolia Actaea_racemosa Actaea_simplex Adonis_vernalis Anemone_bracteata Anemone_hepatica Anemone_nemorosa Anemone_pulsatilla Aquilegia_atrata Aquilegia_chrysantha Aquilegia_ecalcarata Asteropyrum_cavaleriei Callianthemum_anemonoides Caltha_leptosepala Ceratocephala_falcata Clematis_apiifolia Consolida_regalis Coptis_quinquefolia Delphinium_cheilanthum Delphinium_pictum Dichocarpum_stoloniferum Eranthis_cilicica Eranthis_hyemalis Ficaria_verna Hydrastis_canadensis Isopyrum_thalictroides Nigella_damascena Nigella_sativa Paraquilegia_anemonoides Ranunculus_repens Semiaquilegia_adoxoides Thalictrum_aquilegiifolium Thalictrum_minus Trautvetteria_carolinensis Xanthorhiza_simplicissima ; END; BEGIN CHARACTERS; TITLE Ranunculaceae_CYC1; DIMENSIONS NCHAR=384; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Glaucidium_palmatum AGACTTTCTCTTGACATTGCTCGAAAGTTCTTTAATCTTCAAGACATGCTAGGGTATGATAAGGCCAGCAAG---ACGGTCGAGTGGCTGTTAATAAAGGCAAAGATGCCGATCAAGGAGCTCTGTAGAGGAATGTTGTCC---CAAGCGAAGCTTAGCTGCAGTGGAAGTGCCAAGAGTGTG---TCGTCTACTTCGGAGTGCGAGGTGGTATCTGGGATGGATGAGATTGCTAATAATA---CTGAAGATCATCAGCAAGAAAAGATTTCG---AATGGAAAACCTTCTGGG------GAGGGGATTACCAAAAAGAAAAGAAGTCGACAAACAACACGTAAAGCTACATTTCATCCCCTTGCAAAGGAGTCTAGGGAAAAG Aconitum_anthora AGACTGTCACTTGAAATCGCTCACAGATTCTTTATGGTTCAAGATATGCTTCGTTTCGATAAAGCAAGTAAA---ACAGTTGAATGGTTGTTAACAAAGTCACAGGAGGCAATTGATGACCTTACTACAACT---GTGTCC---ATGACAAAGCCAAGCTGCACAGGAAGTGCCAAAAGTACTGTGTCCTCTACTTCAGAGTGTGAAGCTGTCTCT------------------ACCGAC------GAATATCTTCAGGTACTCAACTTATCC---AACCTCAAATCT---TCG------TCAGGGATCGGTAAAGCCAGAAGGACTAGACAA---ATATGTAAACCCACATGTAAACTCGCCGCAAAGGAATCTAGAGATAAG Aconitum_lycoctonum -GGCTCTCTTTTGATATCGCCCGTAGGTTCTTTAGGGTTCAAGACATGCTTGGGTTCGATAAAGCTAGCAAA---ACCGTGGAATGGCTGTTGATAAAGTCCGAGGCAGCCATCAATGAGCTCTCGAGTAGT---GTGTCC---CAGCCGAAACTCAGCTTCACGGGAAGTGTCAAGAGTCCG---TCGTCCACTTCGGAGTGTGAAGTGGTATCTAGAATTGATGAGATGGTGACCGAT------GAATACCTTCAGCTGGTGAACATGTAC---AGTGGGAAATCC---TCG------ACGGGCGTTGGGAAAGAGAGGAAAGCTAGACAA---GCGCGCAAACCTACATTCAATCCTCTTTCCAAAGAATCCAGGGCGAAG Aconitum_napellus AGGCTGTCTTTTGATATCGCCCGTAGGTTCTTTAGGGTTCAAGACATGCTTGGGTTTGATAAAGCTAGCAAA---ACCGTGGAATGGCTGTTGATAAAGTCCATGGCTGCCATCAATGAGCTCTCTAGTAGT---GTGTCC---CAGCCGAAACTCAGCTTCACAGGTAGCGTCAAGAGTCCG---TCGTCCACTTCGGAGTGTGAAGTGGTATCTAGAATCGATGAGGTGGGGACCGAT------GAATATCTTCAGCTGGTGAACATATCC---AATGGGAAATCC---TCG------ACGGGCGTTGGGAAAGAGAGGAAAGCTAGACAA---ACCCGTAAAGCTACATTCAATCCACTTTCCAAAGAATCCAGGGCGAAG Actaea_cordifolia AGACTGTCACTCGATATTGCCCGTAGGTTCTTTAAGGTTCAAGACATGCTTGGCTATGATAAAGCTAGCAAA---ACGGTTGAATGGCTCTTAACAAAGGCGAAAGAGGCCATCAATGAGCTTTCTAGAAGT---TTCGCC---CAGTCGAAGCTTAGCTGCACTGGAAGTGACAACAGTGGG---TCATCTATTTCGGAGTGTGAAGTAGTATCTGGGATTGATGAAATGGCCACTGAT------GAATATCTTCAGCAAGTAGACACATCT---AGTGGAAAATCA---TCG------CTGGACATTGCCAAAGAAAAAAGAACTAGGAAA---ACGCGCAAAGCTACATTCAATCCCCTGGCGAAAGATTCTAGGGCAAAA Actaea_racemosa AGACTGTCACTCGATATTGCCCGTAGGTTCTTTAAGGTTCAAGACATGCTTGGCTATGATAAAGCTAGCAAA---ACGGTTGAATGGCTCTTAACAAAGGCGAAAGAGGCCATCAATGAGCTTTCTAGAAGT---TTCGCC---CAGTCGAAGCTTAGCTGCACTGGAAGTGACAACAGTGGG---TCATCTATTTCGGAGTGTGAAGTAGTATCTGGGATTGATGAAATGGCCACTGAT------GAATATCTTCAGCAAGTAGACACATCT---AGTGGAAAATCA---TCG------CTGGACATTGCCAAGGAAAAAAGAACTCGGCAA---ACGCGCAAAGCTACATTCAATCCCCTGGCGAAAGATTCTAGGGCAAAA Actaea_simplex AGACTGTCACTCGATATTGCCCGTAGGTTCTTTAAGGTTCAAGACATGCTTGGCTATGATAAAGCTAGCAAA---ACGGTTGAATGGCTCTTAACAAAGGCGAAAGAGGCCATCAATGAGCTTTCTAGAAGT---TTTGCC---CAGTCGAAGATTAGCAGCACTGGAAGTGACAACAGTGGG---TCATCTATTTCAGAGTGTGAAGTAGTATCTGGGATTGATGAAATGGCCACTGAT------GAATATCTTCAGCAAGTAGACACATCT---AGTGGAAAATCA---TCA------CTGGACATTTCCAAAGAAAAAAGAACTAGGCAA---ACGCGCAAAGCTACATTCAATCCCCTGGCGAAAGATGCTAGGGCAAAA Adonis_vernalis AGACTGTCGCTTGATATTGCGCGTAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGTAAA---ACTGTGGAATGGTTGTTAACAAAGTCGAAGGCAGCAATCATAGAGCTCTCAAGGATT---GCATCA---CAGTCGAAGGTGAGCTGCACTGGGAGTGTCAAAAGTGTA---TCGTCTGCTTCGGAGTGTGAGGTGGTATCTGGGATTGATGAAATGACTACTGAT------GAGCATCTACAACAAGTGAGTATATCC---AATGGGAAACCA---TCT------CCGGGGGATGGAAAAGAGAGAAGAAGTAGACAA---ACGCGTAAAGCTACATTCAATCCCCTTGCAAAGGAATCTAGGGCAAAG Anemone_bracteata AGATTGTCGCTCGACATTGCCCGTAGATTTTTCATGGTTCAGGACATGCTTGGTTTTAATAAAGCTAGCAAA---ACCGTTGAGTGGCTTTTGGTACGGTCAAAGACGGCAATCAAAGAGCTTTCTGCAGGT---GTAGCT---CACTCAAAGGTAAGCTGTGCCGGAAGTGTTAAAAGTGTG---TCATTTTCTTCAGAATGTGAAGTGTTATCTGGGTATGATGAAATGGCTACGGAT------GAA------------GTGAACGTTTCC---GGTGGAGATCCGGCCTCA------ACAGGTATTTGCAAGGAGAAAAGAATTAGGAAA---TGTCGTACAGCTGCAATTAATCCCCTTGCTAAGGAATCCAGGACAAAA Anemone_hepatica AGACTGTCGCTCGACATTGCCCGTAGATTCTTCTTGGTTCAGGACATGCTTGGTTTTGATAAAGCTAGCAAA---ACTGTTGAGTGGCTTTTGGTACAGTCAAAAGTGGCAATCAAAGAGCTCGTTGCTGGT---GTCTCT---CAATCAAAGCTTAGCTGCACTGGAAGTGTCAAGAGTGTG---TCATCTTCTTCGGAATGTGAGGTGTTATCTGGGTATGATGAAATGGCAGCGGGT------GAATATCTTCAGCAAGAGAACATATCC---GGTGGAAACCCC---TCG------TCCGGTATTTCCAAGGAGAAAAGAATTAAAAAA---ACTCGTAAAGCTGCACTTAATCCCGTTGCCAAGGAATCCAGGAAAGTG Anemone_nemorosa AGATTGTCGCTTGACATTGCCCGTAGATTCTTCATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGCAAA---ACTGTTGAGTGGCTTTTGGTACAATCAAAAGCCGCAATTAAAGAGCTCTCATCAGAT---GTGTCT---CAATCAAAGGTCAGCAGCGCCGGTAGTGTCAAAAGTGTG---TCATCTTCTTCAGAATGTGAAGTCGTATCCGGGAATGACGAAATGGCAACAGAT------GAA------------GTGAACATCTCC---GGTGGAGACCCGGCCTCT------TCCAGAATTTGCAAGGAGAAGAGAGCTAGGAAA---AGCCGTAAAGCTGCACTTAATCCCCTTGCTAAGGAATCTAGGACAATA Anemone_pulsatilla AGATTATCGCTTGACATTGCCCGTAGATTCTTCATGGTTCAGGACATGCTTGGGTTTGATAAAGCTAGCAAA---ACGGTTGAGTGGCTTTTGGTTCAGTCAAAGACTGCAATCAGCGAGCCCTCTGCAGGT---GTGGCT---CAATCA------------------------AAAAGTGTG---TCATCTTCTTCAGAATGCGAAGTGATATCAGGGAATGTTGAAATGGCTGCAGAT------GAA------------GTGAACATCTCCTCCGGTGGGGACCCGTCCTCA------TCCGGTATGTCCAAGGAGAAAAGAATTAGGAAA---AGCCGGAAAGCGACACTCAACCCCATTGCTAAGGAGTCCAGGACAAAA Aquilegia_atrata AGGCTCTCACTCGATATTGCCCGCAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGTAAA---ACAGTCGAATGGCTACTAACAAAGTCAAAGGAAGCAATCAAGGAGCTGTCTAGAAGT---GTATCCCATCACTCAAAGCTTAGCTGCACCGGAAGTGTGAAGAGTGTA---TCATCTGCTTCTGAGTGTGAAGTGGTATCTGGGATTGAT------ACCACTGAT------GAATATCTTCAGCAAGTGAACATGTCC---AGTGAGAAATCC---TCA------GGAGGCGTAGTAAAAGAACGAAGAACTAAACAA---ACACGTAAAGCTACATTCAATCCCCTTGCAAAAGAATCAAGGGCAAAG Aquilegia_chrysantha AGGCTCTCACTCGATATTGCCCGCAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGTAAA---ACAGTCGAATGGCTACTAACAAAGTCAAAGGAAGCAATCAAGGAGCTGTCTAGAAGT---GTATCCCATCAGTCAAAGCTTAGCTGCACCGGAAGTGTGAAGAGTGTA---TCATCTGCTTCTGAGTGTGAAGTGGTATCTGGGATTGATTACATGACCACTGAT------GAATATCTTCAGCAAGTGAACATGTCT---AGTGAGAAATCC---TCA------GGAGGCGTAGTAAAAGAACGAAGAACTAAACAA---ACACGTAAAGCTACATTCAATCCCCTTGCAAAAGAATCCAGGGCAAAG Aquilegia_ecalcarata AGGCTCTCACTCGATATTGCCCGCAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGTAAA---ACAGTCGAATGGCTACTAACAAAGTCAAAGGAAGCAATCAAGGAGCTGTCTAGAAGT---GTATCCCATCAGTCAAAGCTTAGCTGCACCGGAAGTGTGAAGAGTGTA---TCATCTGCTTCTGAGTGTGAAGTGGTATCTGGGATTGATTACATGACCACTGAT------GAATATCTTCAGCAAGTGAACATGTCC---AGTGAGAAATCC---TCA------GGAGGCGTAGTAAAAGAACGAAGAACTAAACAA---ACACGTAAAGCTACATTCAACCCCCTTGCAAAAGAATCAAGGGCAAAG Asteropyrum_cavaleriei AGACTGTCCCTCGACATTGCCCGTAGGTTCTTTATGGTTCAAGACATGCTTGGTTTCGACAAAGCTAGCAAA---ACAGTCGAATGGCTGTTAATCAAGTCCAATGCCGCGATCAATGAGCTCTCTaGGAGT---GtGTCC---aAGTCGAAGCTAAGCTACACCGGAAGTTTGAAGAGTGTG---TCCTCTACTTCGGAATGTGAAGTAGTATCTGGGACTGATGAGATGGCTACGGAT------GAATACTCTCAGCACGCGAGCATATCCTGCAGTGGGAACCCC---TCT------CCCGGCATTGTCAAAGAGAGACGGACTAGACAA---ACgCGTaaAGCTACaTTCAAtccaCTTGCAAAGGAATCTAGGGCAAAG Callianthemum_anemonoides AGACTGTCCCTCGACATTGCCCGTAGGTTCTTTATGGTTCAAGACATGCTTGGTTTCGACAAAGCTAGCAAA---ACAGTCGAATGGCTGTTAATCAAGTCCAATGCCGCGATCAATGAGCTCTCTAGGAGT---GTGTCC---AAGTCGAAGCTAAGCTACACCGGAAGTCTGAAGAGTGTG---TCCTCTACTTCGGAATGTGAAGTAGTATCTGGGACTGATGAGATGGCTACGGAT------GAATACTCTCAGCACGCGAGCATATCCTGCAGTGGGAACCCC---TCT------CCCGGCATTGTCAAAGAGAGACGGACTAGACAA---ACGCGTAAGGCTACATTTAATCCCCTTGCAAAGGAATCTAGGGCAAAG Caltha_leptosepala AGACTCTCCCTAGACATTGCTAGGAGGTTTTTCATGGTTCAAGATATGCTTGGTTATGATAAAGCTAGCAAA---ACAGTTGAATGGTTGTTAGGGCAGTCTAAAATGGCCATCAAAGAGTTGTCTAGAAGT---GTGTCA---AAGTCCAAGATTAGTTGCAGTGGAAGTGTGAAGAGTGTG---TCATCAACTTCGGAATGCGAAGTAGTCTCTGGGGTGGAAGAAATGGAGCAAAAG------------------------------TCC---------------------------------TGCAAATTAGAGAGAAGGGCAAGACAG---ACGCGTAAAGCTACATTCAATCCTCTTGCTAAAGAGTCTAGGGCAAAA Ceratocephala_falcata AGGCTATCACTTGATATTGCGAGACGATTCTTCATGGTTCAAGATATGCTTGGGTTTGATAAAGCAAGCAAG---ACGGTTGAATGGCTTCTAACAAAGTCCAAAGAAGCAATCAAGGAGCTTACAAATTCT------------CAACCAAAGGTTAGCTGCACA---------AGCACTGTC---TCCTCTACTTCTGAATGTGAAGTAGTTTCTGAATTTGCC------------------------------GAAAAAAAAAATATTGCTTCAAATGGAAAGCCG---TTG------TTGGAGGTAACTAAAGAGAGGCGCACTAGACAA---ATTCGTAAAGCTACATTTAATCCACTGGCGAAAGAGTCAAGGACAAAG Clematis_apiifolia AGATTGTCGCTAGACATTGGCCGTAGGTCCTTTAAGGTTCAGGACATGCTCGGCTTTGATAAAGGTAGCAAA---GCTGTAGAATGGCTCCTGGTGCGGTCGGAAGCAGCAATCAATAAGCTCTATGCAGGT---GTGTCA---CAATCA------AATTGCACCGGAAGTGTAAAGAGCGTG---TCGTCTACTTCGGAATGTGAAGTGGTATCTGGGTACGACGAAATGGCTACAGAT------GAATATCTTCAGCAAGTGAACATCTCC---GGTGAAAACCCC---TCA------TCCGGTATATCCAAGGAGAAAAGAACTAAGAAA---TCTCGTAAAGCTGCAGTTAATCCACTTGCCAAGGAATCCAGGAAAATA Consolida_regalis AGGCTGTCTTATGATATCGCCGTTAAGTTCTTTAAGCTTCAGGATATTCTTGGCTTTGACAAAGCCAGCAAA---ACTGTTGGATGGCTGTTGAAAAAGTCCCAGGACGCCATCGATGAGCTCACTAGTAGC---GTGTCC---CAGCCGAAGCTCAGCTGCACAGGATGTATCAAGAGCTTG---TCATCTGCTTCAGATTCTGAAGTGATATCTACAACTGATGAGATGCCTACTGAT------GAT---CCTCAGCAAGTGAACACATCC---AATGGGAGATCC---TCATCCTCGCCGGGCATTGGGAAAGAGAGGAAAGCTAGGCAA---ACGCGCAAAGCTACATTCTATCCCCTTTCCAAAGAATCCAGGGAGAAG Coptis_quinquefolia AGACTGTCACTCGATATTGCTCGTAGGTTTTTTGCTCTTCAAGATATGCTTCGTTTTGATAAAGCGAGCAAA---ACGGTTGAATGGCTGCTAACAAAGTCGAAGGCAGCAATCAAGGAGCTCTCAAAAATT---GTGTAC---GAGGAAAAGCTTAGTAGCATTGGTAGTGTCAAGAGTGCA---TCGTCTGCTTCCGAGTGTGAAGTAGTATCCGGAATTGATGAGATGGTCAACAAT------GAAAATCTAGAGCAAGTGAACATCTCC---AGTGGAGGACCC---TTG------TCCAGCATTTCCAAAGAAAAAAGAACTAGACAA---ACACGAAAAGCTACATTTCATCCCCTTGCGAAGGAATCTAGGGCAAAG Delphinium_cheilanthum AGGCTGTGTTATGATATCGCCATTAAGTTCTTCAAGCTTCAAGATATGCTTGGCTTTGACAAAGCTAGCAAA---ACTGTTGGATGGCTGTTGACAAAATCCCAGGCAGCCATCAATGAGCTCACT---AGT---ATGTCC---CAGCCAAAACTCAGCTGCACAGGAAGTTTCAAGAGTGTG---TCGTCTACTTCTGAGTGCGATGTGGTATCTATAGTTGATGAGATGCCTACTGAT------GAC---ACTCAGCAAGTGAACATATCC---AGCGGTAGATCC---TCG------CCGGGCATTGGGAAAGAGAGGAAAGCTAGACAA---ACACGCAAAGCTACATTCTATCCTCTTTCGAAAGAATCCAGGGAGAAG Delphinium_pictum AGGCTGTCTTTTGATATCGCGCGTAGGTTCTTTATGGTTCAAGATATGCTTGGCTTTGATAAAGCTAGTAAA---ACTGTGGAATGGCTTTTGACAAAGTCGAAGGAGGCCATCAGTGAGCTGTCCGGTAAT---GTGTCC---CAGCGGAAAAGCAGCTGCACGGGAAGTGTCAAGAGCTTG---TCGTCTACTTCAGAGTGTGAAGTGGTATCTAGAATCGAAGAGATGACCACCGAT------GATTATCTGCAGCAAGTGAATATATCA---AGTGGGAGATCC---TCG------CCGTGCATTGGGAAAGAGAGGAAAGCTAGACAA---ACGCGTAAAGCTACATTTAATCCCCTAGCCAAAGAATCGAGGGAGAAG Dichocarpum_stoloniferum AGGCTCTCACTTGATATTGCCCGCAGATTCTTTATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGTAAA---ACGGTGGAATGGCTACTAACAAAGTCGAAGGAACCAATCAAGGATCTGTCTAGAAGT---GTATCC---CTGTCAAAGCTTAGCTGCACCGGAAGTGTGAAGAGTGTG---TCATCTGCTTCGGAGTGTGAAGTGGTATCTGGGAATGATTACATTAGCACTGAT------GAATATCTTCATCAAGTGAACATCGCT---AGTGGGAAATCG---GCCTTAGGAAGCAGCCTAGTAAAAGAAGGAAGAACTAAACAA---ACACGTAAAGCTACATTCAACCCCCTTGCAAAAGAATCAAGGGCAAAG Eranthis_cilicica AGACTGTCACTCGATATTGCCCGTAGGTTCTTTAAGATTCAAGACATGCTTGGCTTTGATAAAGCTAGCAAA---ACGGTGGAATGGCTCTTAACAAAGGCGAAAACAGCAATAAATGAGCTCTCTACAAAT---CTCGCA---CCCTCGAAGCTTAGCTGCACGGTAAGTGACAACAGTGGG---TCATCTATTTCGGAATGTGAAGTAGTATCTGGGATTGATGAGATGGCCACTGAT------GAT---CTTCAGAAAGTAGAGACATCC---ACTGGAAAATCA---TCG------CCGGATATTGCCAAAGAAAAAAGAACTAGACAA---ACACGCAAAGCTGCATTCAATCCCCTGGCGAAAGAATCTAGGGCAAAG Eranthis_hyemalis AGACTGTCACTCGATATTGCCCGTAGGTTCTTTAAGATTCAAGACATGCTTGGCTTTGATAAAGCTAGCAAA---ACGGTGGAATGGCTCTTAACAAAGGCGAAAACAGCAATAAATGAGCTCTCTACAAAT---CTCGCA---CCCTCGAAGCTTAGCTGCACGGTAAGTGACAACAGTGGG---TCATCTATTTCGGAATGTGAAGTAGTATCTGGGATTGATGAGATGGCCACTGAT------GAT---CTTCAGAAAGTAGAGACATCC---ACTGGAAAATCA---TCG------CCGGATATTGCCAAAGAAAAAAGAACTAGACAA---ACACGCAAAGCTGCATTCAATCCCCTGGCGAAAGAATCTAGGGCAAAG Ficaria_verna AGATTATCGCTTGATATAGCTAGACGATTCTTCATGGTTCAAGATATGCTTGGTTTCGACAAAGCTAGCAAG---ACGGTTGAATGGCTTCTGACACAGTCGACAGGTGCAATCAAGGAGCTCGCTGTCAAC---ATTTCT---CAATCAAAGCTTAGCTGCACG---------ACGAGTGTG---TCGTCTTTGTCCGAATGTGAAGTAGTATCCGGATTCGAC---------GCCGAT---------------GAGAAAGTGGACATCTCC---AATGGACACCCC---TCG------TCCGATGTGACCAAGGAAAGAAGGACTAGGCAA---ACTCGGAAAGCTACATTTAATCCCCTGGCAAAGGAATCAAGGACAAAG Hydrastis_canadensis AGACTTTCGCTTGATATTGCGCGGAGATTCTTCACCGTTCAAGACATGCTTGGTTTTGATAAAGCTAGCAAA---ACGGTTGATTGGCTGTTAACACAGTCGAAAGAAGCAATCAAGGAGCTATCTAGTGGT---GTTTCA---ATAGCCAAGTCTAGTTGCAGTGGGAGTGTGAAGAGTGTG---TCTTCAACATCTGAGTGTGAAGTAGTATCTGGAATCGATGAGATTGCTAACGAC------GATGATCATCAGAAAGTGAACATCTCT---AATGGAAAATCA---TTA------GGGGGAAGTGCTAAAGTGAAAAAAACCAGAAAA---TCGCGTCAAGCTACATTTCATCCCTTTACAAAAGAATCTAGGGCAAAG Isopyrum_thalictroides AGGCTCTCGCTCGATATTGCCCGCAGGTTTTTTATGGTTCAAGACATGCTTGGGTTTGACAAAGCTAGTAAA---ACGGTGGAATGGCTGCTAACAAAGTCGAAGGAACCAATCAAGGAGCTGTCTAGAAGT---GTATCC---CAGTCAAAGCTTAGCTGCACCAGAAGTGTTAAGAGTGTATTATCATCTGCTTCGGAGTGTGAAGTGGTATCTGGGATTGATTTCATGGCCACTGAT------GAATATCTTCACCAAGTGAACATCTCT---AGTGGGAAATCC---TTA------GGAGGCCTAGTAAAAGAACGAAGAACTAAACAA---ACACGTAAAGCTACATTCAACCCCCTTGCAAAAGAATCAAGGGCAAAG Nigella_damascena AGGCTTTCACTTCCTATTGCGCGTAAGTTCTTTATGGTTCAAGACATGCTTGGTTACGACAAAGCAAGCAAG---ACGGTTGAATGGCTGCTGACCAAGTCGAAAGAGGCTATCAATGAGCTCTCCAGAAGT---GTGTCT---CACTCCAAGTTTAGCTACACTGGAAGTGTCAAGAGTGGC---TCATCTATTTCCGAGTGTGAAGAGGTGTCTGCTTTAGATGAAATAGCTACTAAC------AACACATCCAGTACGGTGAATTCC---------------------CAA------TCGGGTGTTGCCAAGGAGAGAAGAATTAGACAA---ACGCGTAAAGCTGCATTCAATCCTCTTGCCAAGGAGTCTAGGGCAAAA Nigella_sativa AGGCTTTCACTTCCTATTGCGCGTAAGTTCTTTATGGTTCAAGACATGCTTGGTTACGACAAAGCAAGCAAG---ACGGTTGAATGGCTGCTGACCAAGTCGAAAGAGGCTATCAATGAGCTCTCCAGAAGT---GTGTCT---CACTCCAAGTTTAGCTACACTGGAAGTGTCAAGAGTGGC---TCATCTATTTCCGAGTGTGAAGAGGTGTCTGCTTTAGATGAAATAGCTACTAAC------AACACATCCAGTACGGTGAATTCC---------------------CAA------TCGGGTGTTGCCAAGGAGAGAAGAATTAGACAA---ACGCGTAAAGCTGCATTCAATCCTCTTGCCAAGGAATCTAGGGCAAAA Paraquilegia_anemonoides AGGCTCTCACTTGATATTGCCCGCAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGTAAA---ACGGTGGAATGGCTACTAACAAAGTCGAAGGAAGCAATCAAGGAGCTGTCTAGAAGT---GTATCC---CAGTCAAAGCTTAGCTGCACCGGAAGTCTGAAGAGTGTA---TCATCTGCTTCGGAGTGTGAAGTGGTACCTGGAATTGATTACATGACCACTGAT------GAATATCTTCATCAAGTGAACATCTCT---AGTGGGAAATCC---TTA------GGAGGCCTAGTAAAAGAACAAAGAACCAAACAA---ACACGTAGAGCTACATTCAACCCCCTTGCAAAAGAATCAAGGGCAAAG Ranunculus_repens AGATTATCGCTCGATATTGCTAGAAGGTTTTTCATGGTTCAAGATATGCTTGGTTTCGATAAAGCTAGTAAG---ACGGTTGAATGGCTTCTGACACAGTCGAAGAATGCAATCAAGGAGCTCTCTAACAAT---ATTTCT---CAATCAAAGACTAGCTGCACGACGAGTGTC---ACTCTC---TCCTCTACTTCAGAATGTGAAGTAGTATCTGGATTTCATGGAATGGCAACTGAC------GAGGATCTTCGAAAAGGTATTCTTTCC---AATGGAAACCCC---TTG------TCCGAATCAACTAAGGAAAGAAGGACTAGGCAA---ACTCGGAAATCTACATTTAATCCCCTCGCAAAGGAATCTAGGACAAAG Semiaquilegia_adoxoides AGGCTCTCACTCGATATTGCCCGCAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGATAAAGCTAGTAAA---ACAGTCGAATGGCTACTAACAAAGTCAAAGGAAGCAATCAAGGAGCTGTCTAGAAGT---GTATCCCATCAGTCAAAGCTTAGCTGCACCGGAAGTGTGAAGAGTGTA---TCATCTGCTCCTGAGTGTGAAGTGGTATCTGGGATTGATTACATGACCACTGAT------GAATATCTTCAGCAAGTGAACATGTCC---AGTGAGAAATCC---TCA------GGAGGCGTAGTAAAAGAACGAAGAACTAAACAA---ACACGTAAAGCTACATTCAACCCCCTTGCAAAAGAATCAAGGGCAAAG Thalictrum_aquilegiifolium AGGCTCTCGCTCGATATTGCTCGCAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGACAAAGCTAGTAAA---ACGGTGGAATGGCTACTAACAAAGTCCAAGGAAGCAATTAAGGTGCTGTCTAGTAGT---GTATCC---CAGTCAAAGCTTAGCAGCACCGGAAGTGTGAAGAGTGTA---TCATCTGCTTCCGAGTGCGACGTCGTATCTGGGATTGATTACATGACCACTGAT------GAATGTGTTCATCAAGTGAACATCTCT---AGTGGGAAATCC---TTA------GGTGGCCTAGTAAAAGAGCGAAGAACTAAACAA---ACACGTAAAGCTACATTCAACCCCATTGCAAAAGAATCAAGGGCCATG Thalictrum_minus AGGCTCTCACTCGATATTGCCCGCAGGTTCTTTATGGTTCAAGACATGCTTGGTTTTGACAAAGCTAGTAAA---ACGGTGGAATGGCTACTAACAAAGTCCAAGGAAGCAATTAAGGAGCTGTCTAGAAGT---GTATCC---CAGTCAAAGCTTAGCTGCACAGGAAGTGCGAAGAGTGTA---TCATCTGCTTCCGAGTGTGACGTGGTATCTGGGATTGATTACATGACCACTGAT------GAATATGTTCATCAAGTAAACATCTCT---AGTGGGAAATCC---TTC------GGTGGCCTAGTAAAAGAACGAAGAACTAAACAA---ACACGTAAAACTACATTCAACCCCATTGCAAAAGAATCAAGGGCAAAG Trautvetteria_carolinensis AGATTATCGCTGGATATTGCTAGACGATTCTTCATGGTTCAAGATATGCTTGGTTTCGACAAAGCTAGCAAG---ACAGTTGAATGGCTTTTGATACAGTCCAAAGGCGCAATCAAAGAGCTCTCTAACAAC---ATTTCT---CAGTCCAAGCTTAGCAGCACGACCAGTGCCAAGAGTGTG---TCGTCTACTTCGGAATGTGAAGTAGTATCTGGGTTTGATGAAATGGCGACTGAT------GAAGATCTTCAGAAAGTTATCATTTCC---AATGGAAACCCC------------------TCAAGTAAGCAAAGAAGGACTAGACAA---ATTCGGAAAGCTACATTCAATCCCCTCGCAAAGGAATCAAGGACAAAG Xanthorhiza_simplicissima AGACTGTCACTCGATATTGCTCGTAGGTTTTTTGCTCTTCAAGATATGCTTGGTTTTGATAAAGCAAGCAAA---ACGGTTGAATGGCTGCTAACAAAATCAAAGGCAGCAATCAAGGAGCTCTCAAAAATT---GTGTAC---GAGGCAAAGCTTAGTAGAATTGGTAGTGTCAAGAGTGCA---TTGTCTACTTCCGAGGGTGAAGTAGTATCTGGAATTGATGAGATGGTCAGCAAT------GAAGATTTAGAGCAACTGAACATCTCC---AGTGGAAGACCC---TCA------TCCAGCATTTCCAAAGAAAAAAAAACTAGACAA---ACACGAAAAGTAACATTTCATCCCCTTGCGAAGGAATCTAGGGCAAAA ; END; BEGIN mrbayes; Outgroup Glaucidium_palmatum; Lset Nst = 6 Rates = gamma; showmodel; mcmc ngen = 2000000 samplefreq = 100 printfreq = 1000; sump burnin = 5000; sumt burnin = 5000; END; BEGIN TREES; Title Ranunculaceae_CYC1; LINK Taxa = Taxa; TRANSLATE [0] 1 Glaucidium_palmatum, [1] 2 Aconitum_anthora, [2] 3 Aconitum_lycoctonum, [3] 4 Aconitum_napellus, [4] 5 Actaea_cordifolia, [5] 6 Actaea_racemosa, [6] 7 Actaea_simplex, [7] 8 Adonis_vernalis, [8] 9 Anemone_bracteata, [9] 10 Anemone_hepatica, [10] 11 Anemone_nemorosa, [11] 12 Anemone_pulsatilla, [12] 13 Aquilegia_atrata, [13] 14 Aquilegia_chrysantha, [14] 15 Aquilegia_ecalcarata, [15] 16 Asteropyrum_cavaleriei, [16] 17 Callianthemum_anemonoides, [17] 18 Caltha_leptosepala, [18] 19 Ceratocephala_falcata, [19] 20 Clematis_apiifolia, [20] 21 Consolida_regalis, [21] 22 Coptis_quinquefolia, [22] 23 Delphinium_cheilanthum, [23] 24 Delphinium_pictum, [24] 25 Dichocarpum_stoloniferum, [25] 26 Eranthis_cilicica, [26] 27 Eranthis_hyemalis, [27] 28 Ficaria_verna, [28] 29 Hydrastis_canadensis, [29] 30 Isopyrum_thalictroides, [30] 31 Nigella_damascena, [31] 32 Nigella_sativa, [32] 33 Paraquilegia_anemonoides, [33] 34 Ranunculus_repens, [34] 35 Semiaquilegia_adoxoides, [35] 36 Thalictrum_aquilegiifolium, [36] 37 Thalictrum_minus, [37] 38 Trautvetteria_carolinensis, [38] 39 Xanthorhiza_simplicissima; TREE con_50_majrule = (1:8,(29:7,((22:1,39:1):5,(2:5,8:5,(31:1,32:1):4,(18:2,(16:1,17:1):1):3,((3:1,4:1):2,(24:2,(21:1,23:1):1):1):2,((26:1,27:1):1,(5:1,6:1,7:1):1):3,((28:2,38:2,(19:1,34:1):1):2,(10:3,20:3,(11:2,(9:1,12:1):1):1):1):1,((15:2,35:2,(13:1,14:1):1):1,(25:2,30:2,33:2,(36:1,37:1):1):1):2):1):1):1); END;