#NEXUS [written Thu Feb 11 00:41:38 SGT 2016 by Mesquite version 3.03 (build 702) at MesemiteAir.local/10.80.14.191 (William Piel)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=78; TAXLABELS Acropora_digitifera_Adig00172 Acropora_digitifera_Adig00181 Acropora_digitifera_Adig05085 Acropora_digitifera_Adig09624 Acropora_digitifera_Adig10817 Acropora_digitifera_Adig17522 Acropora_digitifera_Adig20703 Acropora_digitifera_Adig24441 Acropora_millepora_Ami011480 Acropora_millepora_Amil11921 Acropora_millepora_Amil14607 Acropora_millepora_Amil2124 Acropora_millepora_Amil2315 Acropora_millepora_Amil26503 Acropora_millepora_Amil6206 Acropora_millepora_Amil6211 Acropora_millepora_Amil7024 Acropora_millepora_Amil7664 Acropora_millepora_Amil8813 Canis_lupus_familiaris_CANFA_B2l2 Canis_lupus_familiaris_CANFA_Bak Canis_lupus_familiaris_CANFA_Bax Canis_lupus_familiaris_CANFA_Bcl2 Canis_lupus_familiaris_CANFA_Bclx Canis_lupus_familiaris_CANFA_Mcl1 Canis_lupus_familiaris_Canfab2a1 Canis_lupus_familiaris_Canfab2l13 Gallus_gallus_CHICK_Bak1 Gallus_gallus_CHICK_Bcl2 Gallus_gallus_CHICK_Bok Gallus_gallus_Chickb2a1 Gallus_gallus_Chickb2l1 Gallus_gallus_Chickb2l13 Homo_sapiens_HUMAN_B2a1 Homo_sapiens_HUMAN_B2l1 Homo_sapiens_HUMAN_B2l2 Homo_sapiens_HUMAN_Bak Homo_sapiens_HUMAN_Bax Homo_sapiens_HUMAN_Bcl2 Homo_sapiens_HUMAN_Bok Homo_sapiens_HUMAN_Mcl1 Homo_sapiens_Humanb2l10 Homo_sapiens_Humanb2l13 Mus_musculus_MOUSE_B2l1 Mus_musculus_MOUSE_B2l2 Mus_musculus_MOUSE_Bak Mus_musculus_MOUSE_Bax Mus_musculus_MOUSE_Bcl2 Mus_musculus_MOUSE_Bok Mus_musculus_MOUSE_Mcl1 Mus_musculus_Mouseb2l10 Mus_musculus_Mouseb2l13 Mus_musculus_Mouseb2la1 Nematostella_vectensis_Nemv100129 Nematostella_vectensis_Nemv100278 Nematostella_vectensis_Nemv114394 Nematostella_vectensis_Nemv128814 Nematostella_vectensis_Nemv139409 Nematostella_vectensis_Nemv196260 Nematostella_vectensis_Nemv208969 Nematostella_vectensis_Nemv244968 Nematostella_vectensis_Nemv245329 Nematostella_vectensis_Nemv246637 Nematostella_vectensis_Nemv37807 Stylophora_pistillata_STP_G8xqy4 Fugu_rubripes_TAKRU_B2l1 Fugu_rubripes_TAKRU_Bcl2 Fugu_rubripes_TAKRU_Bok Tetraodon_nigroviridis_TETNG_B2l1 Tetraodon_nigroviridis_TETNG_Bcl2 Tetraodon_nigroviridis_TETNG_Bok Tetraodon_nigroviridis_TETNG_Mcl1 Xenopus_tropicalis_Xentf7cwh6 Xenopus_tropicalis_XENTR_b2l1 Xenopus_tropicalis_XENTR_b2l2 Xenopus_tropicalis_XENTR_bax Xenopus_tropicalis_XENTR_bcl2 Xenopus_tropicalis_XENTR_mcl1 ; END; BEGIN CHARACTERS; TITLE Bcl2; DIMENSIONS NCHAR=104; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Acropora_digitifera_Adig00172 LGEIGDEIDAKYKDQFKDMIDSLSLTPAT---AYETFAALARRLFRSG-INWGRIVALLCFGYEIAVTVIRRGFSGNFLRRIIRFVVDFIFNEIARWIAEHGGW Acropora_digitifera_Adig00181 LRRVADELIEENRQLFDSMCDQLHLTHAS---TYATFVGIADEIFQTG-KNWGRIVAFLAFGATLAVYCVQKEDLAELLDNIIEWLSLYMEQNLGQWINENGGW Acropora_digitifera_Adig05085 LEKISQEIMQMIPHLMDEPLKIMRGGNL----SYEQFSVAARRLTFDHQIGWSKVALLCHFAREVAITG-ELDDSQ--LEMLAEHSFRFIQESTEEWIEKKGGW Acropora_digitifera_Adig09624 IQEIGELLELGYPELYMNISSQLNVSFSNENAVHEAFNNVSSEILSDG-VNWPRIVAVYAFCGALVCE-CYKEGRNSFVLNMGNWMYEFAALHFVEWIKLQGGW Acropora_digitifera_Adig10817 LRKLATLMEAEHPDLFESLCTTLGITPNT---AHPTFVGVAQEIFQAG-INWGRIVALFTFGGVVAHHFVEIQRL-EMVQRIVEWIADFIEHNLLTWIRENGGW Acropora_digitifera_Adig17522 LRKLADQIEEQYPSLLNHLCHKLNITRTT---AYTTFVEIASEVFVDG-INWGRIVALFAFGGKLAVY-CNQHNMEDLVASVTEWIARYVGGL-SDWIESHGGW Acropora_digitifera_Adig20703 LRRLTDGLEDSHSVVLANMCNRLNVLSGT---ARSKFVQVADEVFRDG-INWGRIVAVYAFGAKLSQY-CMRNGLEDDVAEVVLWLGNYISGL-SAWIQAQGGW Acropora_digitifera_Adig24441 -TEIGELLESSYPHLYNNVSKQLKVKLRSEVIVGDVFRNFGRELFRDG-VTWCRIVSLFAFSASISTD-CIVQGRPELVKSVLSCVRLYVLDHLAVWIRGQGGW Acropora_millepora_Ami011480 LRRLADGLEDSHSVVLANMCNRLNVLSGT---ARSKFVQVADEVFRDG-INWGRIVAVYAFGAKLSQY-CMRNGLEDDVAEVVLWLGNYISGL-SAWIQAQGGW Acropora_millepora_Amil11921 ITEIGELLESSYPHLYNNVSKQLKVKLRSEVIVGDVFRNFGRELFRDG-VTWCRIVSLFAFSASISTD-CIVQGRPELVKTVLSCVRLYVLDHLAVWIRGQGGW Acropora_millepora_Amil14607 LEKISQEIMQMIPDLMDEPLKIMRGGNL----SYEQFSVAARRLTFDHQVGWSKVALLCHFAREVAITG-ELDDSQ--LEMLAEHSFRFIQESTEEWIEKKGGW Acropora_millepora_Amil2124 LCEIGALLEDTYPRLYNNVLQQLNFRINLGILACHMFNRVSEQIIASG-ITWGRIVALYAFAGALAYD-FTQAGDTRFIRDVSGWMGCFTAKRLSPWIRQNGGW Acropora_millepora_Amil2315 IQEIGELLELGYPGLYMNISSQLNVSFSNENAVHEAFNNVSSEILSDG-VNWPRIVAVYAFCGALVCE-CYKEGRNSFVLNMGNWMYEFAALHLVEWIKLQGGW Acropora_millepora_Amil26503 LRKLADQIEEQYPSLLNHLCHKLNITRTT---AYTTFVEIASEVFVDG-INWGRIVALFAFGGKLAVY-CNQHNMEDLVASVTEWIARYVGGL-SDWIESHGGW Acropora_millepora_Amil6206 LGEIGDEIDAKYKDQFKDMIDSLSLTPAT---AYETFAALARRLFRSG-INWGRIVALLCFGYEIAVTVIRRGFSGNFLRRIIRFVVDFIFNEIARWIAEHGGW Acropora_millepora_Amil6211 LRRVADELIEENRQLFDSMCDQLHLTHAS---TYATFVGIADEIFQTG-KNWGRIVAFLAFGATLAVYCVQKEDLAELLDNIIEWLSLYMEQNLGQWINENGGW Acropora_millepora_Amil7024 IREIGDRLAND--ASLNTMISQVRVSKDT---AFDTFLQVAAQIFSDGVVNWGRIVTLFYFGYKLAVQ-VIN-EVP-LIKMIVEWLVKFIKDKLAKWIFEQGGW Acropora_millepora_Amil7664 LRRIGREVEIRHQLILKNMCGKLDIRASS---AQITFRTVADEIFATG-INWGRVVVLFCFAAEVAVF-CRQQ-EIDVVENIVTWLSEYLSQILSEWIKKSGGW Acropora_millepora_Amil8813 LRKLATLMEAEHPDLFESLCTTLGITPNT---AHPTFVGVAQEIFQAG-INWGRIVALFTFGGVVAHHFVEIQRL-EMVQRIVEWIADFIEHNLLTWIRENGGW Canis_lupus_familiaris_CANFA_B2l2 MRAAGDEFETRFRRTFSDLAAQLHVTPGS---AQQRFTQVSDELFQGG-PNWGRLVAFFVFGAALCAESVN-KEMEPLVGQVQEWMVAYLETRLADWIHSSGGW Canis_lupus_familiaris_CANFA_Bak LAIIGDDINQRYDSEFQAMLQHLQPTAEN---AYEYFTKIASSLFESG-INWGRVVALLGFGYRLALHVYQRGLTG-FLGQVTRFVADFMLHHIARWIAQRGGW Canis_lupus_familiaris_CANFA_Bax LKRIGDELDSN--MELQRMIAAVDT--DS---PREVFFRVAAEMFSDGNFNWGRVVALFYFASKLVLK-ALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW Canis_lupus_familiaris_CANFA_Bcl2 LRRAGDDFSRRYRRDFAEMSSQLHLTPFT---ARGRFATVVEELFRDG-VNWGRIVAFFEFGGVMCVESVN-REMSPLVDNIALWMTEYLNRHLHTWIQDNGGW Canis_lupus_familiaris_CANFA_Bclx LREAGDEFELRYRRAFSDLTSQLHITPGT---AYQSFEQVVNELFRDG-VNWGRIVAFFSFGGALCVESVD-KEMQVLVSRIAAWMATYLNDHLEPWIQENGGW Canis_lupus_familiaris_CANFA_Mcl1 LQRVGDGVQRNHETAFQGMLRKLDIKNED---DVKSLSRVIVHVFSDGVTNWGRIVTLISFGAFVAKHLKSINQE-SCIEPLAESITDVLVRTKRDWLVKQRGW Canis_lupus_familiaris_Canfab2a1 LQDVAFSVQGQVEKNLKPCLDSFDVVSVDT--ARTIFNQVMEKEFEDGVINWGRIVTVFAFEGILTKKLLEQRISSDA-EKVSYFVAEFITRNMRDWIRQNGGW Canis_lupus_familiaris_Canfab2l13 LAHLGEKVSQELKEPLQKALQMLLSQPV----TYQAYRECTLETTVH--SGWNKILVPLVLLQQMLLEL-RRGQEP--LSALLQFGVTYLEDYAAEYIIQQGGW Gallus_gallus_CHICK_Bak1 LAIIGDDINKRYDAEFRHMLKSLQPTKEN---AYEYFTTIASSLFDSG-INWGRVIALLGFGYCMAIHVYQQGITG-FLRRIARYVTEFMLRNIARWIAQQGGW Gallus_gallus_CHICK_Bcl2 LRQAGDEFSRRYQRDFAQMSGQLHLTPFT---AHGRFVAVVEELFRDG-VNWGRIVAFFEFGGVMCVESVN-REMSPLVDNIATWMTEYLNRHLHNWIQDNGGW Gallus_gallus_CHICK_Bok LLRLGDELEYIRPNVYRNIARQLNISLHSETVVTDAFLAVAAQIFTAG-ITWGKVVSLYAVAAGLAVD-CVRHAQPAMVHTIVDCLGEFVRKTLVTWLKRRGGW Gallus_gallus_Chickb2a1 LRNIASSLQDQTEEALRPFLDRIDITSVDV--AKRIFNGVMEEKFADGNTNWGRIMTIFTFGGLLTKKLQEHGVQLEEKEKISYFITEYIINNKAAWIDANGGW Gallus_gallus_Chickb2l1 LRDAGDEFELRYRRAFSDLTSQLHITPGT---AYQSFEQVVNELFHDG-VNWGRIVAFFSFGGALCVESVD-KEMRVLVGRIVSWMTTYLTDHLDPWIQENGGW Gallus_gallus_Chickb2l13 LAHLGEKVSQELKEHLHKALESLLSKPV----TYQEYRERTQETAAH--SGWNKVLVPLVLLQQFLMEL-RRGQEP--LSALVNFGVTYLEDYSADYIIQQGGW Homo_sapiens_HUMAN_B2a1 LQNVAFSVQKEVEKNLKSCLDNVNVVSVDT--ARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDTYKEISYFVAEFIMNNTGEWIRQNGGW Homo_sapiens_HUMAN_B2l1 LREAGDEFELRYRRAFSDLTSQLHITPGT---AYQSFEQVVNELFRDG-VNWGRIVAFFSFGGALCVESVD-KEMQVLVSRIAAWMATYLNDHLEPWIQENGGW Homo_sapiens_HUMAN_B2l2 MRAAGDEFETRFRRTFSDLAAQLHVTPGS---AQQRFTQVSDELFQGG-PNWGRLVAFFVFGAALCAESVN-KEMEPLVGQVQEWMVAYLETQLADWIHSSGGW Homo_sapiens_HUMAN_Bak LAIIGDDINRRYDSEFQTMLQHLQPTAEN---AYEYFTKIATSLFESG-INWGRVVALLGFGYRLALHVYQHGLTG-FLGQVTRFVVDFMLHHIARWIAQRGGW Homo_sapiens_HUMAN_Bax LKRIGDELDSN--MELQRMIAAVDT--DS---PREVFFRVAADMFSDGNFNWGRVVALFYFASKLVLK-ALCTKVPELIRTIMGWTLDFLRERLLGWIQDQGGW Homo_sapiens_HUMAN_Bcl2 LRQAGDDFSRRYRRDFAEMSSQLHLTPFT---ARGRFATVVEELFRDG-VNWGRIVAFFEFGGVMCVESVN-REMSPLVDNIALWMTEYLNRHLHTWIQDNGGW Homo_sapiens_HUMAN_Bok LLRLGDELEMIRPSVYRNVARQLHISLQSEPVVTDAFLAVAGHIFSAG-ITWGKVVSLYAVAAGLAVD-CVRQAQPAMVHALVDCLGEFVRKTLATWLRRRGGW Homo_sapiens_HUMAN_Mcl1 LRRVGDGVQRNHETAFQGMLRKLDIKNED---DVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQE-SCIEPLAESITDVLVRTKRDWLVKQRGW Homo_sapiens_Humanb2l10 LRSAAARLRQIHRSFFSAYLGYPGNR-------FELVALMADSVLSDSPPTWGRVVTLVTFAGTLLERGWGFQPRLRDCQRLVALLSSRLMG-HRAWLQAQGGW Homo_sapiens_Humanb2l13 LAHLGEKVSQELKEPLHKALQMLLSQPV----TYQAFRECTLETTVH--SGWNKILVPLVLLRQMLLEL-RRGQEP--LSALLQFGVTYLEDYSAEYIIQQGGW Mus_musculus_MOUSE_B2l1 LREAGDEFELRYRRAFSDLTSQLHITPGT---AYQSFEQVVNELFRDG-VNWGRIVAFFSFGGALCVESVD-KEMQVLVSRIASWMATYLNDHLEPWIQENGGW Mus_musculus_MOUSE_B2l2 MRAAGDEFETRFRRTFSDLAAQLHVTPGS---AQQRFTQVSDELFQGG-PNWGRLVAFFVFGAALCAESVN-KEMEPLVGQVQDWMVAYLETRLADWIHSSGGW Mus_musculus_MOUSE_Bak -ALIGDDINRRYDTEFQNLLEQLQPTAGN---AYELFTKIASSLFKSG-ISWGRVVALLGFGYRLALYVYQRGLTG-FLGQVTCFLADIILHHIARWIAQRGGW Mus_musculus_MOUSE_Bax LRRIGDELDSN--MELQRMIADVDT--DS---PREVFFRVAADMFADGNFNWGRVVALFYFASKLVLK-ALCTKVPELIRTIMGWTLDFLRERLLVWIQDQGGW Mus_musculus_MOUSE_Bcl2 LRRAGDDFSRRYRRDFAEMSSQLHLTPFT---ARGRFATVVEELFRDG-VNWGRIVAFFEFGGVMCVESVN-REMSPLVDNIALWMTEYLNRHLHTWIQDNGGW Mus_musculus_MOUSE_Bok LLRLGDELEQIRPSVYRNVARQLHIPLQSEPVVTDAFLAVAGHIFSAG-ITWGKVVSLYSVAAGLAVD-CVRQAQPAMVHALVDCLGEFVRKTLATWLRRRGGW Mus_musculus_MOUSE_Mcl1 LRRVGDGVQRNHETAFQGMLRKLDIKNEG---DVKSFSRVMVHVFKDGVTNWGRIVTLISFGAFVAKHLKSVNQE-SFIEPLAETITDVLVRTKRDWLVKQRGW Mus_musculus_Mouseb2l10 LRSVTRQIQQEHQEFFSSFCESRGNR-------LELVKQMADKLLSKDQFSWSQLVMLLAFAGTLMNQGRDLGNRVRDCCLIVNFLYNLLMGRHRARLEALGGW Mus_musculus_Mouseb2l13 LAHLGERVSQDLKEPLQKALQTILSQPV----TYEAYRECTVETAVH--SGWNKLLVPLVLLQHLLLEL-RRGQEP--LRMLLQFGVMYLEEHAAEFIIQQGGW Mus_musculus_Mouseb2la1 LQRVAFSVQKEVEKNLKSYLDDFHVESIDT--ARIIFNQVMEKEFEDGIINWGRIVTIFAFGGVLLKKLPQEQIALCAYKQVSSFVAEFIMNNTGEWIRQNGGW Nematostella_vectensis_Nemv100129 LREIGDQLTND--ATLNNLIAECHVTKDT---AFDTFLAVALQIFQDGVINWGRIVTLFYFGYKLALK-VLN-QIP-LIKMIIEWVVKFVKEKLVKWIFQQGGW Nematostella_vectensis_Nemv100278 LRIVADELIADNSELFHSMCDQLHLTPIS---TYPTFVGIANEIFQSG-KNWGRVVAFLAFGATLAVYCAQREELHELVNDIVEWVSRYMDQNLSCWIRENGGW Nematostella_vectensis_Nemv114394 --------ENAYPALYQNISEQLNFRINLEIVVCGMFTCVCDNILASG-ITWARVVSLYAFAAALAVD-CCQT-DVRIAKNISKWMGQYTKKRLSGWVRENGGW Nematostella_vectensis_Nemv128814 LRSLASHMEAEYPDLFETACTKLGITPAT---ARSTFFSVAKEIFQTG-INWGRIVALFTFGGVVAHHFIESERP-EMVPHVVEWIPSFIADNLLSWIMENGGW Nematostella_vectensis_Nemv139409 -------LEECYPRLYADISRHVNASFTSETVVHDVFSSVCTEIVKDG-VNWARIIAVYTFAGALATE-CYKDSRSVFVTEVSNWMYEFTALHLVDWIKKRGGW Nematostella_vectensis_Nemv196260 LGEVGDEIDAKYRDQFHDMIESLHLTPGT---AYDTFAAVARRLFRSG-ISWGRIIALLCFGYEIAITVIRRGFSGSFLRRIIRFVVDFIFREIARWIAEH--- Nematostella_vectensis_Nemv208969 MRRLSDELEERHGPLLCNMCNSLNMTANS---AHEKFVQVADEVFKDG-INWGRIVAVFTFGGRLAQF-CARNGLHDGVREVEAWLGDYIANL-SHWIQTQGGW Nematostella_vectensis_Nemv244968 LRKLADKIEEQYPALLNHLCHKLNISRST---AYSTFVEIAGEVFADG-VNWGRIVVLYAFGGRLAVY-CEQHNMKDLVQSVTDWVGKYIAGL-SEWIANEGGW Nematostella_vectensis_Nemv245329 LDKIGQEIMESYPHLLDESMEITKDWDLRC-ITYEDFQAAARKVTLDNKVGWSKVALLCFFAREIAMEC-ELDDKE--LIQLAEYTVRFIEETTGEWIERQGGW Nematostella_vectensis_Nemv246637 LRKLSNQIENKHELFLRNMCDRLDIRQHN---APETFKQVADEIFGDG-INWGRIVVLYTFAGKVAKY-CQEN-QLDNAENVATWVGNYVASK-SDWVKKAGGW Nematostella_vectensis_Nemv37807 --QIGELLETAYPYLYHNVSKHLKIRLRSEVIVGDVFRTFGRELFRDG-VSWAKVIALFAFAASMSED-CVMQGRPELVKSILNNVRAYVRDHLAVWIRNHGGW Stylophora_pistillata_STP_G8xqy4 LRKLATDTEAKYPDLFESVCTKLDITPAS---AHRTFVCVAKEIFQEE-TNWGRIVALYAFGGVVAHHFVETQRP-EMVQKIVEWTATFIAENLLTWIKENGGW Fugu_rubripes_TAKRU_B2l1 LRDSAEEFEKLFAQAFSDLSSQLDITPDT---AYQSFKNVMDEVFKDG-VNWGRVVGLFAFGGVLCVECVE-KDASQLVCRIADWMTIYLDEHINPWIQSQGGW Fugu_rubripes_TAKRU_Bcl2 LREAGDELERLYQPDFTEMSRQLYLSSTT---AQRRFAEVIDELFRDG-VNWGRIIAFFEFGGAVCAECAAKEEMSPQVDNIAEWMTEYLNGSLNSWIQDNGGW Fugu_rubripes_TAKRU_Bok LMWLGAELEYLRPNVYCNVARQLNITVASESIMSDAFLAVAADIFSTG-VTWGKVVSLYAVAGALAVD-CVRHGHPAMIHTIVDCMGEFVRKSLISWLKRRGGW Tetraodon_nigroviridis_TETNG_B2l1 LRDSAEEFEKLFAQAFSDLSSQLVITPDT---AYQSFKNVMDEVFKDG-VNWGRIVGLFAFGGVLCVECVE-KDASELVCRIADWMTIYLDEHINPWIQSQGGW Tetraodon_nigroviridis_TETNG_Bcl2 LREAGDELERLYQPDFTEMSRQLYLTSTT---AQRRFAEVIDELFRDG-VNWGRIIAFFEFGAAVCAECAAKEEMSPQVDNIAEWMTEYLSGSLNSWIQDNGGW Tetraodon_nigroviridis_TETNG_Bok LLWLGDELEHLRPNVYCNVARQLNITVASESIMSDAFLAVAADIFSTG-VTWGKVVSLYAVAGALAVD-CVRHGHPAMVHTIVDCMGEFVRKSLTSWLKRRGGW Tetraodon_nigroviridis_TETNG_Mcl1 --RVVGDLMEKHRYTYRGMINKLFMEDRVG--DVSFVGAVAKSTFEDGNTNWGRVASLLAFAAVVAQYLNDHGQR-DCVEQVAQEISTYLLTDQRDWLIKNNAW Xenopus_tropicalis_Xentf7cwh6 --RLGDELEYMRPTVYRNIARQLNISLTSETILSDAFLAVAAEIFTAG-ITWGKVVSLYAVAAGLAVD-CVKQSQPALVLTIVDCLGEFIRKTLVTWLKRRGGW Xenopus_tropicalis_XENTR_b2l1 LLDASEEFELRYQRAFSDLTAQLHLTQDT---AQQSFQQVVGELFRDG-TNWGRIVAFFSFGRALCVESAN-KEMTELLPRIVQWMVQYLEHTLQPWMLENGGW Xenopus_tropicalis_XENTR_b2l2 MRAAGDEFEERFRQAFSEISTQIHVTPGT---AYARFAEVAGSLFQGG-VNWGRIVAFFVFGAALCAESVN-KEMSPLLPRIQDWMVTYLETNLRDWIQSNGGW Xenopus_tropicalis_XENTR_bax LRKIGDELDAN--IELQRRIECVPC--NS---PKQVFFHVAKELFADGVFNWGRVVALFYFACKLVVK-ALCTKVPEMIRTIINWTMEYLREYVVQWIRDQGGW Xenopus_tropicalis_XENTR_bcl2 LSRAGDEFSRLYQQDFRQISGLLHLTPST---VRVRFATVVEELFHDG-VNWGRIVAFFEFGGVMCVESVN-REMSPLVDSIVGWMTEYLNSHLQNWIQEQGGW Xenopus_tropicalis_XENTR_mcl1 LQRVGGDIIEKHHMAFTGMLQRLSIHSRE---DLQKLSEVPALVFNDGVTNWGRIVTVISFGAFVAKHLKSIDLE-DCIMALAEHFTLFLMTSKKDWIIQEKGW ; END; BEGIN TREES; Title Bcl2_Mr_Bayes; LINK Taxa = Taxa; TRANSLATE [0] 1 Acropora_digitifera_Adig00172, [1] 2 Acropora_digitifera_Adig00181, [2] 3 Acropora_digitifera_Adig05085, [3] 4 Acropora_digitifera_Adig09624, [4] 5 Acropora_digitifera_Adig10817, [5] 6 Acropora_digitifera_Adig17522, [6] 7 Acropora_digitifera_Adig20703, [7] 8 Acropora_digitifera_Adig24441, [8] 9 Acropora_millepora_Ami011480, [9] 10 Acropora_millepora_Amil11921, [10] 11 Acropora_millepora_Amil14607, [11] 12 Acropora_millepora_Amil2124, [12] 13 Acropora_millepora_Amil2315, [13] 14 Acropora_millepora_Amil26503, [14] 15 Acropora_millepora_Amil6206, [15] 16 Acropora_millepora_Amil6211, [16] 17 Acropora_millepora_Amil7024, [17] 18 Acropora_millepora_Amil7664, [18] 19 Acropora_millepora_Amil8813, [19] 20 Canis_lupus_familiaris_CANFA_B2l2, [20] 21 Canis_lupus_familiaris_CANFA_Bak, [21] 22 Canis_lupus_familiaris_CANFA_Bax, [22] 23 Canis_lupus_familiaris_CANFA_Bcl2, [23] 24 Canis_lupus_familiaris_CANFA_Bclx, [24] 25 Canis_lupus_familiaris_CANFA_Mcl1, [25] 26 Canis_lupus_familiaris_Canfab2a1, [26] 27 Canis_lupus_familiaris_Canfab2l13, [27] 28 Gallus_gallus_CHICK_Bak1, [28] 29 Gallus_gallus_CHICK_Bcl2, [29] 30 Gallus_gallus_CHICK_Bok, [30] 31 Gallus_gallus_Chickb2a1, [31] 32 Gallus_gallus_Chickb2l1, [32] 33 Gallus_gallus_Chickb2l13, [33] 34 Homo_sapiens_HUMAN_B2a1, [34] 35 Homo_sapiens_HUMAN_B2l1, [35] 36 Homo_sapiens_HUMAN_B2l2, [36] 37 Homo_sapiens_HUMAN_Bak, [37] 38 Homo_sapiens_HUMAN_Bax, [38] 39 Homo_sapiens_HUMAN_Bcl2, [39] 40 Homo_sapiens_HUMAN_Bok, [40] 41 Homo_sapiens_HUMAN_Mcl1, [41] 42 Homo_sapiens_Humanb2l10, [42] 43 Homo_sapiens_Humanb2l13, [43] 44 Mus_musculus_MOUSE_B2l1, [44] 45 Mus_musculus_MOUSE_B2l2, [45] 46 Mus_musculus_MOUSE_Bak, [46] 47 Mus_musculus_MOUSE_Bax, [47] 48 Mus_musculus_MOUSE_Bcl2, [48] 49 Mus_musculus_MOUSE_Bok, [49] 50 Mus_musculus_MOUSE_Mcl1, [50] 51 Mus_musculus_Mouseb2l10, [51] 52 Mus_musculus_Mouseb2l13, [52] 53 Mus_musculus_Mouseb2la1, [53] 54 Nematostella_vectensis_Nemv100129, [54] 55 Nematostella_vectensis_Nemv100278, [55] 56 Nematostella_vectensis_Nemv114394, [56] 57 Nematostella_vectensis_Nemv128814, [57] 58 Nematostella_vectensis_Nemv139409, [58] 59 Nematostella_vectensis_Nemv196260, [59] 60 Nematostella_vectensis_Nemv208969, [60] 61 Nematostella_vectensis_Nemv244968, [61] 62 Nematostella_vectensis_Nemv245329, [62] 63 Nematostella_vectensis_Nemv246637, [63] 64 Nematostella_vectensis_Nemv37807, [64] 65 Stylophora_pistillata_STP_G8xqy4, [65] 66 Fugu_rubripes_TAKRU_B2l1, [66] 67 Fugu_rubripes_TAKRU_Bcl2, [67] 68 Fugu_rubripes_TAKRU_Bok, [68] 69 Tetraodon_nigroviridis_TETNG_B2l1, [69] 70 Tetraodon_nigroviridis_TETNG_Bcl2, [70] 71 Tetraodon_nigroviridis_TETNG_Bok, [71] 72 Tetraodon_nigroviridis_TETNG_Mcl1, [72] 73 Xenopus_tropicalis_Xentf7cwh6, [73] 74 Xenopus_tropicalis_XENTR_b2l1, [74] 75 Xenopus_tropicalis_XENTR_b2l2, [75] 76 Xenopus_tropicalis_XENTR_bax, [76] 77 Xenopus_tropicalis_XENTR_bcl2, [77] 78 Xenopus_tropicalis_XENTR_mcl1; TREE con_50_majrule = ((((59:0.08493996637511769,(1:0.006311970869397591,15:0.006212578247106765):0.05629789433623017):0.1371893499953344,(28:0.137169883430346,(37:0.03461904006755463,(21:0.01790938886321949,46:0.1532430870147214):0.0173453045909635):0.1421126154007527):0.3519895576653728):0.1893631277359277,((62:0.1805676729116761,(3:0.01446882315949979,11:0.0167196592186603):0.329730267094262):0.4707739764616506,(52:0.05953830601984808,(27:0.00670592845105368,(33:0.1601294544412256,43:0.02543010709855979):0.02544216274040044):0.12037591339361):0.7459880489299275):0.316395939511778):0.11289548551724185,(((17:0.1576141441574051,54:0.1369821023792086):0.1929748207469201,(76:0.1995505660959565,(47:0.01239051304700672,(22:0.01505832373672037,38:0.00716017634711418):0.03956454048272688):0.1441616202055908):0.3742900040090547):0.1318979966651381,(((55:0.1360676962427801,(2:0.006243489669360551,16:0.006329557488783786):0.1542090855743092):0.2629566278380229,((5:0.006458539204073034,19:0.0063715635769322):0.07089153345536767,(57:0.2014294511340462,65:0.1628932962223524):0.0687231118108177):0.2820423913884629):0.09805096145373994,((66:0.03180415733994987,69:0.008592443492082862):0.2162143841000114,((74:0.2610484489834968,(32:0.03897751483157562,(44:0.006476551956243904,(24:0.006470906320921805,35:0.006391843395009593):0.01533756101071126):0.05271863016774566):0.07326225619303244):0.05926411786257445,((75:0.1289664374848048,(45:0.007790703039492578,(20:0.006441668475738959,36:0.01497867442595432):0.01487957883097008):0.1828058355564958):0.1699076904574404,((67:0.01518185400340923,70:0.02451482796869065):0.2553368772179024,((29:0.04230201010620024,77:0.1836582666442809):0.04017676364530341,(39:0.009600186093318187,(23:0.006454938683261642,48:0.00649552494699848):0.01363300542460037):0.02767658848232592):0.0947558869120069):0.1951362454431339):0.06113616983821882):0.1402688708285676):0.3224060103351216,((61:0.1465969109644445,(6:0.006291900451236601,14:0.006421795669149717):0.1280491377907337):0.2262526945648443,(60:0.2121951397807952,(7:0.01511369046448892,9:0.006847795976092417):0.2241285008945322):0.1531864955594236,((18:0.3580807721050643,63:0.2613021023569294):0.1501692586476132,((31:0.270735940849702,(26:0.07393798525806472,(34:0.07908870543943103,53:0.1481260668409312):0.1277617302599276):0.2804322608782823):0.3507751698725957,((42:0.2676165673881273,51:0.4399713843146298):0.5939696999196032,(72:0.4572962968031631,(78:0.3204563066622512,(25:0.01844908641946081,(41:0.02364276454468744,50:0.06179154206737095):0.01661002711991121):0.2237966344437963):0.2508098090369038):0.2353208296196349):0.1795505909917124):0.2175899964015519):0.1474432010066415,(((68:0.04000655577058067,71:0.01783433640935804):0.1706951714957135,(73:0.06499418847114792,(30:0.01554382759685665,(40:0.008363810106561476,49:0.03088386231761805):0.1261624263682162):0.04315008582351448):0.1027382864149766):0.365435306716835,((64:0.171601921139612,(8:0.006552739051126389,10:0.01498522927583167):0.1312913988160253):0.3748384814409273,((12:0.2503305136229716,56:0.2333751465087754):0.2656687795552342,(58:0.2433727666740917,(4:0.02079188311968527,13:0.008948084995424333):0.2490076204335363):0.1994734867056984):0.1337557061983315):0.1475547522592232):0.2561600880641359):0.1612420973139961):0.1657647525672604):0.11289548551724185)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = Bcl2) = unord: 1 - 104; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = Bcl2) = universal: 1 - 104; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = Bcl2) = 'Mk1 (est.)': 1 - 104; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1455122498347; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2577900899522434397; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4835142898270982578; mqVersion 303; checksumv 0 3 3456886236 null getNumChars 104 numChars 104 getNumTaxa 78 numTaxa 78 short false bits 1048575 states 1048575 sumSquaresStatesOnly 8.6745748392814E13 sumSquares 8.6745748392814E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 241; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1332 730; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4835142898270982578 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;