#NEXUS [written Fri May 06 01:03:09 SGT 2016 by Mesquite version 3.03 (build 702) at MesemiteAir.local/10.0.1.8 (William Piel)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=180; TAXLABELS 'Geospiza fuliginosa Sample_ful22' 'Geospiza fuliginosa Sample_ful2' Geospiza_fuliginosa_ful2.bam 'Geospiza fuliginosa Sample_ful12' 'Geospiza fuliginosa Sample_ful19' 'Geospiza fuliginosa Sample_ful13' 'Geospiza fuliginosa Sample_ful23' 'Geospiza fuliginosa Sample_ful1' Geospiza_fuliginosa_ful1.bam 'Geospiza fuliginosa Sample_ful8' Geospiza_difficilis_Wolf_DW1.bam Geospiza_difficilis_Wolf_DW5.bam Geospiza_difficilis_Wolf_DW7.bam Geospiza_difficilis_Wolf_DW8.bam Geospiza_difficilis_Wolf_DW6.bam Geospiza_difficilis_Wolf_DW3.bam Geospiza_difficilis_Wolf_DW2.bam Geospiza_difficilis_Wolf_DW9.bam Geospiza_difficilis_Darwin_DD1.bam Geospiza_difficilis_Darwin_DD3.bam Geospiza_difficilis_Santiago_DS1.bam 'Geospiza difficilis Santiago Sample_DS14' Geospiza_difficilis_Pinta_DP5.bam Geospiza_difficilis_Pinta_DP3.bam Geospiza_difficilis_Pinta_DP2.bam Geospiza_difficilis_Pinta_DP9.bam Geospiza_difficilis_Pinta_DP11.bam Geospiza_difficilis_Pinta_DP7.bam Geospiza_difficilis_Pinta_DP13.bam Geospiza_difficilis_Pinta_DP6.bam Geospiza_difficilis_Pinta_DP10.bam Geospiza_difficilis_Pinta_DP4.bam Geospiza_difficilis_Fernandina_DF1.bam Geospiza_difficilis_Fernandina_DF2.bam Certhidea_heliobates_HEL2.bam Certhidea_heliobates_HELi.bam Camarhynchus_pallidus_PAL1.bam Camarhynchus_pallidus_PAL2.bam Camarhynchus_pallidus_PAL3.bam Camarhynchus_pallidus_PAL4.bam Camarhynchus_pallidus_PAL5.bam 'Camarhynchus psittacula Sample_LTF380' 'Camarhynchus psittacula Sample_LTF28' 'Camarhynchus psittacula Sample_LTF8' 'Camarhynchus psittacula Sample_LTF5' 'Camarhynchus psittacula Sample_LTF3' 'Camarhynchus psittacula Sample_LTF4' 'Camarhynchus psittacula Sample_LTF27' 'Camarhynchus psittacula Sample_LTF7' Camarhynchus_psittacula_PSIT2.bam Camarhynchus_psittacula_PSIT1.bam 'Camarhynchus psittacula Sample_LTF1' 'Camarhynchus pauper Sample_MTF13' 'Camarhynchus pauper Sample_MTF15' 'Camarhynchus pauper Sample_MTF19' 'Camarhynchus pauper Sample_MTF5' Camarhynchus_pauper_PAU1.bam 'Camarhynchus pauper Sample_MTF4' 'Camarhynchus pauper Sample_MTF17' Camarhynchus_pauper_PAU2.bam 'Camarhynchus pauper Sample_MTF11' 'Camarhynchus pauper Sample_MTF1' 'Camarhynchus pauper Sample_MTF16' 'Camarhynchus pauper Sample_MTF2' 'Camarhynchus parvulus Sample_STF2' 'Camarhynchus parvulus Sample_STF4' 'Camarhynchus parvulus Sample_STF17' 'Camarhynchus parvulus Sample_STF1' Camarhynchus_parvulus_PARV1.bam 'Camarhynchus parvulus Sample_STF7' 'Camarhynchus parvulus Sample_STF13' Camarhynchus_parvulus_PARV2.bam 'Camarhynchus parvulus Sample_STF8' 'Camarhynchus parvulus Sample_STF5' 'Camarhynchus parvulus Sample_STF18' 'Camarhynchus parvulus Sample_STF6' 'Camarhynchus psittacula Sample_LTF22' Loxigilla_noctis_L6.bam Loxigilla_noctis_L1.bam Loxigilla_noctis_L3.bam Loxigilla_noctis_L2.bam Loxigilla_noctis_L7.bam Tiaris_bicolor_T3.bam Tiaris_bicolor_T1.bam Tiaris_bicolor_T2.bam Certhidea_olivacea_Co15.bam Certhidea_olivacea_Co16.bam Certhidea_olivacea_Co20.bam Certhidea_olivacea_Co13.bam Certhidea_olivacea_Co14.bam Certhidea_fusca_Espanola_CfE10.bam Certhidea_fusca_Espanola_CfE5.bam Certhidea_fusca_Espanola_CfE7.bam Certhidea_fusca_Espanola_CfE1.bam Certhidea_fusca_Espanola_CfE6.bam Certhidea_fusca_Espanola_CfE3.bam Certhidea_fusca_Espanola_CfE2.bam Certhidea_fusca_Espanola_CfE4.bam Certhidea_fusca_Espanola_CfE9.bam Certhidea_fusca_Espanola_CfE8.bam Certhidea_fusca_San_Cristobal_Cfc9.bam Certhidea_fusca_San_Cristobal_Cfc10.bam Certhidea_fusca_San_Cristobal_Cfc7.bam Certhidea_fusca_San_Cristobal_Cfc4.bam Certhidea_fusca_San_Cristobal_Cfc6.bam Certhidea_fusca_San_Cristobal_Cfc3.bam Certhidea_fusca_San_Cristobal_Cfc2.bam Certhidea_fusca_San_Cristobal_Cfc8.bam Certhidea_fusca_San_Cristobal_Cfc5.bam Certhidea_fusca_San_Cristobal_Cfc1.bam Platyspiza_crassirostris_PL7.bam Platyspiza_crassirostris_PL15.bam Platyspiza_crassirostris_PL9.bam Platyspiza_crassirostris_PL16.bam Platyspiza_crassirostris_PL4.bam Pinaroloxias_inornata_PIN4.bam Pinaroloxias_inornata_PIN8.bam Pinaroloxias_inornata_PIN6.bam Pinaroloxias_inornata_PIN1.bam Pinaroloxias_inornata_PIN5.bam Pinaroloxias_inornata_PIN2.bam Pinaroloxias_inornata_PIN7.bam Pinaroloxias_inornata_PIN3.bam Geospiza_scandens_sca19331.bam Geospiza_scandens_sca19381.bam Geospiza_conirostris_Genevosa_CG1.bam Geospiza_conirostris_Genevosa_CG4.bam Geospiza_conirostris_Genevosa_CG5.bam Geospiza_conirostris_Genevosa_CG7.bam Geospiza_conirostris_Genevosa_CG3.bam Geospiza_conirostris_Genevosa_CG9.bam Geospiza_conirostris_Genevosa_CG6.bam Geospiza_conirostris_Genevosa_CG10.bam Geospiza_conirostris_Genevosa_CG2.bam Geospiza_conirostris_Genevosa_CG8.bam 'Geospiza fortis Sample_F14' Geospiza_conirostris_Espanola_CE5.bam Geospiza_conirostris_Espanola_CE4.bam Geospiza_conirostris_Espanola_CE6.bam Geospiza_conirostris_Espanola_CE8.bam Geospiza_conirostris_Espanola_CE10.bam Geospiza_conirostris_Espanola_CE3.bam Geospiza_conirostris_Espanola_CE1.bam Geospiza_conirostris_Espanola_CE9.bam Geospiza_conirostris_Espanola_CE7.bam Geospiza_conirostris_Espanola_CE2.bam Geospiza_magnirostris_MG4.bam Geospiza_magnirostris_MG2.bam Geospiza_magnirostris_mg11.bam Geospiza_magnirostris_MG3.bam Geospiza_magnirostris_MG7.bam 'Geospiza magnirostris Sample_9398' 'Geospiza magnirostris Sample_9387' 'Geospiza magnirostris Sample_9309' 'Geospiza magnirostris Sample_9737' 'Geospiza magnirostris Sample_9379' 'Geospiza magnirostris Sample_9773' 'Geospiza magnirostris Sample_9703' 'Geospiza magnirostris Sample_9287' 'Geospiza magnirostris Sample_9709' 'Geospiza magnirostris Sample_9779' 'Geospiza fortis Sample_F12' 'Geospiza fortis Sample_F6' 'Geospiza fortis Sample_F15' 'Geospiza fortis Sample_F3' 'Geospiza fortis Sample_F1' 'Geospiza fortis Sample_F13' 'Geospiza fortis Sample_F19' 'Geospiza fortis Sample_F17' 'Geospiza fortis Sample_F21' Geospiza_difficilis_Genevosa_DG101.bam Geospiza_difficilis_Genevosa_DG107.bam Geospiza_difficilis_Genevosa_DG108.bam Geospiza_difficilis_Genevosa_DG103.bam Geospiza_fortis_F1.bam Geospiza_fortis_F2.bam 'Geospiza fuliginosa Sample_ful16' 'Geospiza fuliginosa Sample_ful3' Geospiza_fuliginosa_fulig12.bam Geospiza_fuliginosa_fulig15.bam ; END; BEGIN CHARACTERS; TITLE MRP_Fig._1C; DIMENSIONS NCHAR=178; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1"; MATRIX 'Geospiza fuliginosa Sample_ful22' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000100001010100000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful2' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000100001010110000000000000000000000000000000000 Geospiza_fuliginosa_ful2.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000100001010110000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful12' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000100001011000000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful19' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000100001011000000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful13' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000111000000000000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful23' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000111000000000000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful1' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000110110000000000000000000000000000000000000000 Geospiza_fuliginosa_ful1.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000110110000000000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful8' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000110100000000000000000000000000000000000000000 Geospiza_difficilis_Wolf_DW1.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001101010000000000000000000000000000000000000000000000000000000000000000000000 Geospiza_difficilis_Wolf_DW5.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001101011100000000000000000000000000000000000000000000000000000000000000000000 Geospiza_difficilis_Wolf_DW7.bam 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0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Geospiza difficilis Santiago Sample_DS14'0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Geospiza_difficilis_Pinta_DP5.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000110101000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Geospiza_difficilis_Pinta_DP3.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000110101101110000000000000000000000000000000000000000000000000000000000000000000000000000000 Geospiza_difficilis_Pinta_DP2.bam 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0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000110110000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Geospiza_difficilis_Fernandina_DF2.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000110110000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Certhidea_heliobates_HEL2.bam 0010000100000000000000000000000010000000000001111110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Certhidea_heliobates_HELi.bam 0010000100000000000000000000000010000000000001111110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Camarhynchus_pallidus_PAL1.bam 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0010000100000000000000000000000010000000000001111101101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF380' 0010000100000000000000000000000010000000000001111000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF28' 0010000100000000000000000000000010000000000001111000000110011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF8' 0010000100000000000000000000000010000000000001111000000110011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF5' 0010000100000000000000000000000010000000000001111000000110011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF3' 0010000100000000000000000000000010000000000001111000000110010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF4' 0010000100000000000000000000000010000000000001111000000110010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF27' 0010000100000000000000000000000010000000000001111000000110010010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF7' 0010000100000000000000000000000010000000000001111000000110010010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Camarhynchus_psittacula_PSIT2.bam 0010000100000000000000000000000010000000000001111000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Camarhynchus_psittacula_PSIT1.bam 0010000100000000000000000000000010000000000001111000000111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus psittacula Sample_LTF1' 0010000100000000000000000000000010000000000001111000000111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF13' 0010000100000000000000000000000010000000000001110000000000000000011001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF15' 0010000100000000000000000000000010000000000001110000000000000000011001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF19' 0010000100000000000000000000000010000000000001110000000000000000011001101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF5' 0010000100000000000000000000000010000000000001110000000000000000011001101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Camarhynchus_pauper_PAU1.bam 0010000100000000000000000000000010000000000001110000000000000000011001000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF4' 0010000100000000000000000000000010000000000001110000000000000000011001000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF17' 0010000100000000000000000000000010000000000001110000000000000000011001000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Camarhynchus_pauper_PAU2.bam 0010000100000000000000000000000010000000000001110000000000000000011001000101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF11' 0010000100000000000000000000000010000000000001110000000000000000011001000101100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF1' 0010000100000000000000000000000010000000000001110000000000000000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF16' 0010000100000000000000000000000010000000000001110000000000000000011110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus pauper Sample_MTF2' 0010000100000000000000000000000010000000000001110000000000000000011110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus parvulus Sample_STF2' 0010000100000000000000000000000010000000000001110000000000000000010000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus parvulus Sample_STF4' 0010000100000000000000000000000010000000000001110000000000000000010000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus parvulus Sample_STF17' 0010000100000000000000000000000010000000000001110000000000000000010000000000010111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 'Camarhynchus parvulus Sample_STF1' 0010000100000000000000000000000010000000000001110000000000000000010000000000010111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Camarhynchus_parvulus_PARV1.bam 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Loxigilla_noctis_L7.bam 0011101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Tiaris_bicolor_T3.bam 1000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Tiaris_bicolor_T1.bam 1100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Tiaris_bicolor_T2.bam 1100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Certhidea_olivacea_Co15.bam 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0010000100000000000000000000000011110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Platyspiza_crassirostris_PL4.bam 0010000100000000000000000000000011110100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_PIN4.bam 0010000100000000000000000000000011000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_PIN8.bam 0010000100000000000000000000000011000011011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_PIN6.bam 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0010000100000000000000000000000011000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Pinaroloxias_inornata_PIN3.bam 0010000100000000000000000000000011000011100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Geospiza_scandens_sca19331.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000111000000000000000000000000000000000000000000000000000000000000000 Geospiza_scandens_sca19381.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000111000000000000000000000000000000000000000000000000000000000000000 Geospiza_conirostris_Genevosa_CG1.bam 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0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000110110011000000000000000000000000000000000000000000000000000000000 Geospiza_conirostris_Genevosa_CG9.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000110110011100000000000000000000000000000000000000000000000000000000 Geospiza_conirostris_Genevosa_CG6.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000110110011100000000000000000000000000000000000000000000000000000000 Geospiza_conirostris_Genevosa_CG10.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000110110010010000000000000000000000000000000000000000000000000000000 Geospiza_conirostris_Genevosa_CG2.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000110110010011000000000000000000000000000000000000000000000000000000 Geospiza_conirostris_Genevosa_CG8.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000110110010011000000000000000000000000000000000000000000000000000000 'Geospiza fortis Sample_F14' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001000000000000000000000000 Geospiza_conirostris_Espanola_CE5.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001110000000000000000000000 Geospiza_conirostris_Espanola_CE4.bam 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0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001111001010100000000000000 Geospiza_magnirostris_MG4.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000011000000000000 Geospiza_magnirostris_MG2.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000011110000000000 Geospiza_magnirostris_mg11.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000011110000000000 Geospiza_magnirostris_MG3.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000011101000000000 Geospiza_magnirostris_MG7.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000011101000000000 'Geospiza magnirostris Sample_9398' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000100000000 'Geospiza magnirostris Sample_9387' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000110000000 'Geospiza magnirostris Sample_9309' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111100000 'Geospiza magnirostris Sample_9737' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111100000 'Geospiza magnirostris Sample_9379' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111010110 'Geospiza magnirostris Sample_9773' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111010110 'Geospiza magnirostris Sample_9703' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111010101 'Geospiza magnirostris Sample_9287' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111010101 'Geospiza magnirostris Sample_9709' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111011000 'Geospiza magnirostris Sample_9779' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001000001100000000010000111011000 'Geospiza fortis Sample_F12' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001101100000000000000000000000000 'Geospiza fortis Sample_F6' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001101100000000000000000000000000 'Geospiza fortis Sample_F15' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001101010000000000000000000000000 'Geospiza fortis Sample_F3' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001101010000000000000000000000000 'Geospiza fortis Sample_F1' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001110000000000000000000000000000 'Geospiza fortis Sample_F13' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001001110000000000000000000000000000 'Geospiza fortis Sample_F19' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001100000000000000000000000000000000 'Geospiza fortis Sample_F17' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001110000000000000000000000000000000 'Geospiza fortis Sample_F21' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000100000000000000000001110000000000000000000000000000000 Geospiza_difficilis_Genevosa_DG101.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111010110000000000000000000000000000000000000000000000 Geospiza_difficilis_Genevosa_DG107.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111010110000000000000000000000000000000000000000000000 Geospiza_difficilis_Genevosa_DG108.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111010101000000000000000000000000000000000000000000000 Geospiza_difficilis_Genevosa_DG103.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111010101000000000000000000000000000000000000000000000 Geospiza_fortis_F1.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111011000000000000000000000000000000000000000000000000 Geospiza_fortis_F2.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111011000000000000000000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful16' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111100000000000000000000000000000000000000000000000000 'Geospiza fuliginosa Sample_ful3' 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000111100000000000000000000000000000000000000000000000000 Geospiza_fuliginosa_fulig12.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000100001100000000000000000000000000000000000000 Geospiza_fuliginosa_fulig15.bam 0010000100000000000000000000000010000000000001000000000000000000000000000000000000000000100000000000001000000000100000000000110000000100001100000000000000000000000000000000000000 ; END; BEGIN TREES; Title Fig._1C; LINK Taxa = Taxa; TRANSLATE [0] 1 'Geospiza fuliginosa Sample_ful22', [1] 2 'Geospiza fuliginosa Sample_ful2', [2] 3 Geospiza_fuliginosa_ful2.bam, [3] 4 'Geospiza fuliginosa Sample_ful12', [4] 5 'Geospiza fuliginosa Sample_ful19', [5] 6 'Geospiza fuliginosa Sample_ful13', [6] 7 'Geospiza fuliginosa Sample_ful23', [7] 8 'Geospiza fuliginosa Sample_ful1', [8] 9 Geospiza_fuliginosa_ful1.bam, [9] 10 'Geospiza fuliginosa Sample_ful8', [10] 11 Geospiza_difficilis_Wolf_DW1.bam, [11] 12 Geospiza_difficilis_Wolf_DW5.bam, [12] 13 Geospiza_difficilis_Wolf_DW7.bam, [13] 14 Geospiza_difficilis_Wolf_DW8.bam, [14] 15 Geospiza_difficilis_Wolf_DW6.bam, [15] 16 Geospiza_difficilis_Wolf_DW3.bam, [16] 17 Geospiza_difficilis_Wolf_DW2.bam, [17] 18 Geospiza_difficilis_Wolf_DW9.bam, [18] 19 Geospiza_difficilis_Darwin_DD1.bam, [19] 20 Geospiza_difficilis_Darwin_DD3.bam, [20] 21 Geospiza_difficilis_Santiago_DS1.bam, [21] 22 'Geospiza difficilis Santiago Sample_DS14', [22] 23 Geospiza_difficilis_Pinta_DP5.bam, [23] 24 Geospiza_difficilis_Pinta_DP3.bam, [24] 25 Geospiza_difficilis_Pinta_DP2.bam, [25] 26 Geospiza_difficilis_Pinta_DP9.bam, [26] 27 Geospiza_difficilis_Pinta_DP11.bam, [27] 28 Geospiza_difficilis_Pinta_DP7.bam, [28] 29 Geospiza_difficilis_Pinta_DP13.bam, [29] 30 Geospiza_difficilis_Pinta_DP6.bam, [30] 31 Geospiza_difficilis_Pinta_DP10.bam, [31] 32 Geospiza_difficilis_Pinta_DP4.bam, [32] 33 Geospiza_difficilis_Fernandina_DF1.bam, [33] 34 Geospiza_difficilis_Fernandina_DF2.bam, [34] 35 Certhidea_heliobates_HEL2.bam, [35] 36 Certhidea_heliobates_HELi.bam, [36] 37 Camarhynchus_pallidus_PAL1.bam, [37] 38 Camarhynchus_pallidus_PAL2.bam, [38] 39 Camarhynchus_pallidus_PAL3.bam, [39] 40 Camarhynchus_pallidus_PAL4.bam, [40] 41 Camarhynchus_pallidus_PAL5.bam, [41] 42 'Camarhynchus psittacula Sample_LTF380', [42] 43 'Camarhynchus psittacula Sample_LTF28', [43] 44 'Camarhynchus psittacula Sample_LTF8', [44] 45 'Camarhynchus psittacula Sample_LTF5', [45] 46 'Camarhynchus psittacula Sample_LTF3', [46] 47 'Camarhynchus psittacula Sample_LTF4', [47] 48 'Camarhynchus psittacula Sample_LTF27', [48] 49 'Camarhynchus psittacula Sample_LTF7', [49] 50 Camarhynchus_psittacula_PSIT2.bam, [50] 51 Camarhynchus_psittacula_PSIT1.bam, [51] 52 'Camarhynchus psittacula Sample_LTF1', [52] 53 'Camarhynchus pauper Sample_MTF13', [53] 54 'Camarhynchus pauper Sample_MTF15', [54] 55 'Camarhynchus pauper Sample_MTF19', [55] 56 'Camarhynchus pauper Sample_MTF5', [56] 57 Camarhynchus_pauper_PAU1.bam, [57] 58 'Camarhynchus pauper Sample_MTF4', [58] 59 'Camarhynchus pauper Sample_MTF17', [59] 60 Camarhynchus_pauper_PAU2.bam, [60] 61 'Camarhynchus pauper Sample_MTF11', [61] 62 'Camarhynchus pauper Sample_MTF1', [62] 63 'Camarhynchus pauper Sample_MTF16', [63] 64 'Camarhynchus pauper Sample_MTF2', [64] 65 'Camarhynchus parvulus Sample_STF2', [65] 66 'Camarhynchus parvulus Sample_STF4', [66] 67 'Camarhynchus parvulus Sample_STF17', [67] 68 'Camarhynchus parvulus Sample_STF1', [68] 69 Camarhynchus_parvulus_PARV1.bam, [69] 70 'Camarhynchus parvulus Sample_STF7', [70] 71 'Camarhynchus parvulus Sample_STF13', [71] 72 Camarhynchus_parvulus_PARV2.bam, [72] 73 'Camarhynchus parvulus Sample_STF8', [73] 74 'Camarhynchus parvulus Sample_STF5', [74] 75 'Camarhynchus parvulus Sample_STF18', [75] 76 'Camarhynchus parvulus Sample_STF6', [76] 77 'Camarhynchus psittacula Sample_LTF22', [77] 78 Loxigilla_noctis_L6.bam, [78] 79 Loxigilla_noctis_L1.bam, [79] 80 Loxigilla_noctis_L3.bam, [80] 81 Loxigilla_noctis_L2.bam, [81] 82 Loxigilla_noctis_L7.bam, [82] 83 Tiaris_bicolor_T3.bam, [83] 84 Tiaris_bicolor_T1.bam, [84] 85 Tiaris_bicolor_T2.bam, [85] 86 Certhidea_olivacea_Co15.bam, [86] 87 Certhidea_olivacea_Co16.bam, [87] 88 Certhidea_olivacea_Co20.bam, [88] 89 Certhidea_olivacea_Co13.bam, [89] 90 Certhidea_olivacea_Co14.bam, [90] 91 Certhidea_fusca_Espanola_CfE10.bam, [91] 92 Certhidea_fusca_Espanola_CfE5.bam, [92] 93 Certhidea_fusca_Espanola_CfE7.bam, [93] 94 Certhidea_fusca_Espanola_CfE1.bam, [94] 95 Certhidea_fusca_Espanola_CfE6.bam, [95] 96 Certhidea_fusca_Espanola_CfE3.bam, [96] 97 Certhidea_fusca_Espanola_CfE2.bam, [97] 98 Certhidea_fusca_Espanola_CfE4.bam, [98] 99 Certhidea_fusca_Espanola_CfE9.bam, [99] 100 Certhidea_fusca_Espanola_CfE8.bam, [100] 101 Certhidea_fusca_San_Cristobal_Cfc9.bam, [101] 102 Certhidea_fusca_San_Cristobal_Cfc10.bam, [102] 103 Certhidea_fusca_San_Cristobal_Cfc7.bam, [103] 104 Certhidea_fusca_San_Cristobal_Cfc4.bam, [104] 105 Certhidea_fusca_San_Cristobal_Cfc6.bam, [105] 106 Certhidea_fusca_San_Cristobal_Cfc3.bam, [106] 107 Certhidea_fusca_San_Cristobal_Cfc2.bam, [107] 108 Certhidea_fusca_San_Cristobal_Cfc8.bam, [108] 109 Certhidea_fusca_San_Cristobal_Cfc5.bam, [109] 110 Certhidea_fusca_San_Cristobal_Cfc1.bam, [110] 111 Platyspiza_crassirostris_PL7.bam, [111] 112 Platyspiza_crassirostris_PL15.bam, [112] 113 Platyspiza_crassirostris_PL9.bam, [113] 114 Platyspiza_crassirostris_PL16.bam, [114] 115 Platyspiza_crassirostris_PL4.bam, [115] 116 Pinaroloxias_inornata_PIN4.bam, [116] 117 Pinaroloxias_inornata_PIN8.bam, [117] 118 Pinaroloxias_inornata_PIN6.bam, [118] 119 Pinaroloxias_inornata_PIN1.bam, [119] 120 Pinaroloxias_inornata_PIN5.bam, [120] 121 Pinaroloxias_inornata_PIN2.bam, [121] 122 Pinaroloxias_inornata_PIN7.bam, [122] 123 Pinaroloxias_inornata_PIN3.bam, [123] 124 Geospiza_scandens_sca19331.bam, [124] 125 Geospiza_scandens_sca19381.bam, [125] 126 Geospiza_conirostris_Genevosa_CG1.bam, [126] 127 Geospiza_conirostris_Genevosa_CG4.bam, [127] 128 Geospiza_conirostris_Genevosa_CG5.bam, [128] 129 Geospiza_conirostris_Genevosa_CG7.bam, [129] 130 Geospiza_conirostris_Genevosa_CG3.bam, [130] 131 Geospiza_conirostris_Genevosa_CG9.bam, [131] 132 Geospiza_conirostris_Genevosa_CG6.bam, [132] 133 Geospiza_conirostris_Genevosa_CG10.bam, [133] 134 Geospiza_conirostris_Genevosa_CG2.bam, [134] 135 Geospiza_conirostris_Genevosa_CG8.bam, [135] 136 'Geospiza fortis Sample_F14', [136] 137 Geospiza_conirostris_Espanola_CE5.bam, [137] 138 Geospiza_conirostris_Espanola_CE4.bam, [138] 139 Geospiza_conirostris_Espanola_CE6.bam, [139] 140 Geospiza_conirostris_Espanola_CE8.bam, [140] 141 Geospiza_conirostris_Espanola_CE10.bam, [141] 142 Geospiza_conirostris_Espanola_CE3.bam, [142] 143 Geospiza_conirostris_Espanola_CE1.bam, [143] 144 Geospiza_conirostris_Espanola_CE9.bam, [144] 145 Geospiza_conirostris_Espanola_CE7.bam, [145] 146 Geospiza_conirostris_Espanola_CE2.bam, [146] 147 Geospiza_magnirostris_MG4.bam, [147] 148 Geospiza_magnirostris_MG2.bam, [148] 149 Geospiza_magnirostris_mg11.bam, [149] 150 Geospiza_magnirostris_MG3.bam, [150] 151 Geospiza_magnirostris_MG7.bam, [151] 152 'Geospiza magnirostris Sample_9398', [152] 153 'Geospiza magnirostris Sample_9387', [153] 154 'Geospiza magnirostris Sample_9309', [154] 155 'Geospiza magnirostris Sample_9737', [155] 156 'Geospiza magnirostris Sample_9379', [156] 157 'Geospiza magnirostris Sample_9773', [157] 158 'Geospiza magnirostris Sample_9703', [158] 159 'Geospiza magnirostris Sample_9287', [159] 160 'Geospiza magnirostris Sample_9709', [160] 161 'Geospiza magnirostris Sample_9779', [161] 162 'Geospiza fortis Sample_F12', [162] 163 'Geospiza fortis Sample_F6', [163] 164 'Geospiza fortis Sample_F15', [164] 165 'Geospiza fortis Sample_F3', [165] 166 'Geospiza fortis Sample_F1', [166] 167 'Geospiza fortis Sample_F13', [167] 168 'Geospiza fortis Sample_F19', [168] 169 'Geospiza fortis Sample_F17', [169] 170 'Geospiza fortis Sample_F21', [170] 171 Geospiza_difficilis_Genevosa_DG101.bam, [171] 172 Geospiza_difficilis_Genevosa_DG107.bam, [172] 173 Geospiza_difficilis_Genevosa_DG108.bam, [173] 174 Geospiza_difficilis_Genevosa_DG103.bam, [174] 175 Geospiza_fortis_F1.bam, [175] 176 Geospiza_fortis_F2.bam, [176] 177 'Geospiza fuliginosa Sample_ful16', [177] 178 'Geospiza fuliginosa Sample_ful3', [178] 179 Geospiza_fuliginosa_fulig12.bam, [179] 180 Geospiza_fuliginosa_fulig15.bam; TREE Fig._1C = ((78:0.01046,((79:0.01467,80:0.01454):0.00326,(81:0.01492,82:0.01517):0.0032):0.00666):0.076935,((83:0.01534,(84:0.03243,85:0.03039):0.01656):0.13959,(((86:0.00761,((87:0.01049,88:0.00943):0.00222,(89:0.0105,90:0.01008):0.00215):0.00349):0.03961,((91:0.0027,((99:0.00299,100:0.00299):0.00052,((96:0.00286,(97:0.00245,98:0.00247):0.00053):0.00055,((92:0.00246,93:0.00232):0.00051,(94:0.00245,95:0.00231):0.00052):0.00055):0.00055):0.00081):0.01329,((101:0.01096,102:0.01111):0.00235,((103:0.01079,104:0.01068):0.00265,((109:0.01055,110:0.01105):0.00265,((105:0.01045,106:0.01097):0.00273,(107:0.0113,108:0.01074):0.00245):0.00092):0.00091):0.00099):0.00848):0.01301):0.00472,(((111:0.0076,((112:0.00874,113:0.00862):0.0018,(114:0.00917,115:0.00883):0.00186):0.00259):0.02636,(116:0.00599,((122:0.00696,123:0.00652):0.00155,((117:0.00767,118:0.0063):0.00167,(121:0.00706,(119:0.00654,120:0.00651):0.00162):0.00074):0.00068):0.00205):0.02591):0.0035,((77:0.01417,((((35:0.01029,36:0.00951):0.00782,(37:0.01245,((38:0.00666,39:0.0064):0.00484,(40:0.00953,41:0.00981):0.00221):0.00183):0.00433):0.00487,(42:0.0134,((50:0.01112,(51:0.00051,52:0.00055):0.01036):0.00268,((43:0.01136,(44:0.01066,45:0.01038):0.00279):0.00147,((46:0.0106,47:0.01089):0.00264,(48:0.0108,49:0.01031):0.0029):0.00123):0.00128):0.00279):0.00471):0.00293,(((62:0.01626,(63:0.01374,64:0.01356):0.00298):0.00151,(((53:0.01323,54:0.0136):0.00322,(55:0.01328,56:0.01348):0.00321):0.00118,((57:0.01203,58:0.01185):0.00435,(59:0.01249,(60:0.00061,61:0.00055):0.01266):0.0038):0.00135):0.00155):0.00316,((65:0.01325,66:0.01359):0.005,(((67:0.01407,68:0.01478):0.00327,(69:0.01583,(70:0.01423,71:0.01444):0.00288):0.00136):0.00125,((72:0.0144,73:0.01423):0.00323,(74:0.01592,(75:0.01428,76:0.01485):0.0029):0.00133):0.00121):0.00116):0.00197):0.00166):0.00321):0.01832,(((21:0.01464,22:0.01484):0.00601,((33:0.01544,34:0.01483):0.0053,(23:0.00942,((31:0.00963,32:0.00974):0.00233,((26:0.01071,(24:0.00955,25:0.0099):0.00247):0.0012,((27:0.00948,28:0.00936):0.00242,(29:0.00962,30:0.0096):0.00238):0.00109):0.00118):0.00267):0.01045):0.00188):0.01448,(((19:0.01014,20:0.01048):0.00469,((17:0.00961,18:0.00985):0.00256,(11:0.00989,((12:0.0093,13:0.00926):0.00253,(14:0.00954,(15:0.00937,16:0.00915):0.00245):0.0014):0.00187):0.00187):0.00419):0.01801,(((124:0.01631,125:0.01598):0.01089,(126:0.02053,((127:0.0195,(128:0.01434,129:0.01615):0.00619):0.00305,((130:0.01984,(131:0.01863,132:0.01583):0.00466):0.00267,(133:0.01992,(134:0.01738,135:0.01721):0.00449):0.0026):0.00234):0.00313):0.00595):0.00374,((((177:0.02272,178:0.023):0.00482,((175:0.01931,176:0.01964):0.00702,((171:0.01734,172:0.01718):0.00412,(173:0.01738,174:0.01804):0.00388):0.00836):0.00257):0.00142,(((6:0.02253,7:0.02252):0.0045,(10:0.0227,(8:0.00081,9:0.001):0.02212):0.00428):0.00172,((179:0.02225,180:0.02234):0.00482,((4:0.02235,5:0.02259):0.00452,(1:0.02277,(2:0.00055,3:0.00076):0.02216):0.00431):0.00139):0.00144):0.00153):0.00185,((168:0.02477,(169:0.02188,170:0.02182):0.00411):0.00211,(((166:0.02142,167:0.02147):0.00481,((162:0.02109,163:0.02093):0.00453,(164:0.02113,165:0.02161):0.00428):0.00158):0.00183,(136:0.02479,((137:0.01506,((138:0.01399,(139:0.00994,140:0.00787):0.00712):0.00354,((141:0.0148,142:0.01445):0.00368,((143:0.01393,144:0.01436):0.00364,(145:0.01466,146:0.01444):0.00335):0.00142):0.00169):0.00355):0.01077,((147:0.02016,((148:0.01637,149:0.01683):0.00431,(150:0.0165,151:0.01602):0.00437):0.00298):0.00463,(152:0.02033,(153:0.01947,((154:0.01261,155:0.01325):0.0067,((160:0.01189,161:0.01292):0.00503,((156:0.01406,157:0.01191):0.00372,(158:0.01571,159:0.01076):0.00373):0.00283):0.00351):0.00423):0.00519):0.00418):0.00325):0.00256):0.00204):0.0019):0.00263):0.00276):0.00374):0.00393):0.00341):0.00284):0.00985):0.06726):0.076935)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = MRP_Fig._1C) = unord: 1 - 178; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = MRP_Fig._1C) = 'Mk1 (est.)': 1 - 178; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1462467789687; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3648015078233689554; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1071590136107558845; mqVersion 303; checksumv 0 3 1042973324 null getNumChars 178 numChars 178 getNumTaxa 180 numTaxa 180 short true bits 3 states 3 sumSquaresStatesOnly 37821.0 sumSquares 37821.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 165; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1250 691; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3648015078233689554 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 901.1462465940206.8360524109831206177; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1085 619; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1071590136107558845 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 230; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1085 619; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; endTell; end;