#NEXUS [written Thu Dec 17 14:59:36 EST 2015 by Mesquite version 3.03 (build 702) at ONOTTRA670030D/10.117.218.113] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=41; TAXLABELS Penicillium_antarticum_CBS100492T_Canescentia_CaM_KP016826_xx Penicillium_antarticum_CBS116939_Canescentia_CaM_JX157255_xx Penicillium_antarticum_CBS116938_Canescentia_CaM_KP016827_xx Penicillium_atrovenetum_CBS241.56T_Canescentia_CaM_KJ867004_xx Penicillium_atrovenetum_CBS243.56_Canescentia_CaM_JX157411_xx Penicillium_canescens_IMI149218_Canescentia_CaM_KP027409_xx Penicillium_canescens_CBS300.48T_Canescentia_CaM_KJ867009_xx Penicillium_murciacum_CBS161.81T_Canescentia_CaM_KP016824_xx Penicillium_murciacum_CBS458.69_Canescentia_CaM_KP016822_xx Penicillium_cf_murciacum_IBT31963_Canescentia_CaM_JX157369_xx Penicillium_cf_murciacum_CBS414.68_Canescentia_CaM_KP016821_xx Penicillium_radiatolobatum_IBT31959_Canescentia_CaM_JX157354_xx Penicillium_radiatolobatum_IBT31958_Canescentia_CaM_JX157359_xx Penicillium_radiatolobatum_CBS340.79T_Canescentia_CaM_KP016825_xx Penicillium_yarmokense_CBS410.69T_Canescentia_CaM_KJ867013_xx Penicillium_echinatum_NRRL917T_Canescentia_CaM_KJ867021_xx Penicillium_griseoazureum_CBS162.42T_Canescentia_CaM_KP016823_xx Penicillium_nigricans_CBS354.48T_Canescentia_CaM_KJ867012_xx Penicillium_dunedinense_CBS138218T_Canescentia_CaM_KJ775405_xx Penicillium_granatense_CBS166.81T_Canescentia_CaM_KJ866998_xx Penicillium_janczewskii_CBS221.28T_Canescentia_CaM_KJ867001_xx Penicillium_janczewskii_CBS413.68_Canescentia_CaM_KJ867014_xx Penicillium_janczewskii_CBS279.47_Canescentia_CaM_KJ867008_xx Penicillium_nigricans_var_sulphuratum_CBS744.70T_Canescentia_CaM_KJ867018_xx Penicillium_cf_canescens_KAS3618_Canescentia_CaM_na_xx Penicillium_cf_canescens_KAS3622_Canescentia_CaM_na_xx Penicillium_jensenii_CBS327.59T_Canescentia_CaM_AY443490_xx Penicillium_jensenii_CBS216.28_Canescentia_CaM_KJ867000_xx Penicillium_novaezeelandiae_clade1_CBS138942T_Canescentia_CaM_JX157468_xx Penicillium_novaezeelandiae_clade1_CBS138956_Canescentia_CaM_JX157402_xx Penicillium_novaezeelandiae_clade1_CBS138955_Canescentia_CaM_JX157401_xx Penicillium_novaezeelandiae_clade2_CBS138949T_Canescentia_CaM_JX157353_xx Penicillium_novaezeelandiae_clade2_CBS138936_Canescentia_CaM_JX157352_xx Penicillium_novaezeelandiae_clade2_CBS138938_Canescentia_CaM_JX157356_xx Penicillium_novaezeelandiae_CBS546.77_Canescentia_CaM_KP016828_xx Penicillium_novaezeelandiae_CBS137.41T_Canescentia_CaM_KJ866996_xx Penicillium_cf_corraligerum_KAS2101_Canescentia_CaM_na_xx Penicillium_cf_corraligerum_KAS2203_Canescentia_CaM_na_xx Penicillium_coralligerum_CBS123.65T_Canescentia_CaM_KJ866994_xx Penicillium_coralligerum_CBS114.69_Canescentia_CaM_KJ866991_xx OUTGROUP_Penicillium_brevicompactum_CBS257.29T_Brevicompacta_CaM_AY484813_xx ; END; BEGIN CHARACTERS; TITLE 'Canescentia_CaM'; DIMENSIONS NCHAR=388; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Penicillium_antarticum_CBS100492T_Canescentia_CaM_KP016826_xx AAGT-GATCAA-ATCCTCGGATTG-AAGT-TGTGGTAGCTGGACAACATACTGACGGC-TTTGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTTGCCC--GACAG--CCCAGTTGAACT-GGCAGCAGTTTGCTTGATCCCAAATTG--AAAAAGAACGAGATGCTAAGACCGATCCTACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTAGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTTCCCTAGATCCACCAGCGAGACGGATATTGACCGGCCGATAGAGTTCTTG Penicillium_antarticum_CBS116939_Canescentia_CaM_JX157255_xx AAGT-GATCAA-ATCCTCGGATTG-AAGT-TGTGGTAGCTGGACAACATACTGACGGC-TTTGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTTGCCC--GACAG--CCCAGTTGAACT-GGCAGCAGTTTGCTTGATCCCAAATTG--AAAAAGAACGAGATGCTAAGACCGATCCTACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTAGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTTCCCTAGATCCACCAGCGAGACGGATATTGACCGGCCGATAGAGTTCTTG Penicillium_antarticum_CBS116938_Canescentia_CaM_KP016827_xx AAGT-GATCAA-ATCCTCGGATTG-AAGT-TGTGGTAGCTGGACAACATACTGACGGC-TTTGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTTGCCC--GACAG--CCCAGTTGAACT-GGCAGCAGTTTGCTTGATCCCAAATTG--AAAAAGAACGAGATGCTAAGACCGATCCTACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTAGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTTCCCTAGATCCACCAGCGAGACGGATATTGACCGGCCGATAGAGTTCTTG Penicillium_atrovenetum_CBS241.56T_Canescentia_CaM_KJ867004_xx AAGT-GATCAC-ATCCCCGGATTG-AAGT-TGTGGCAGCTTGACAACGTACTGACGGC-TTTGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAG--GCCAGTTGAACT-GGCAGCAGTTCGCTCTATCCCGAATTGATAAAAAGAACCATATACTAAGACCGATCCTACCTCCAGGACAAATCACCACAAAGGAGCTTGGCACCGTCATGCGCTCGCTAGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTATTTTCCCGTGTCCCCAAGTCCA-CCAGCAAGACGGATATTGACCCGCCGATAGAGTTCTTG Penicillium_atrovenetum_CBS243.56_Canescentia_CaM_JX157411_xx AAGT-GATCAC-ATCCCCGGATTGAAAGT-TGTGGCAGCTTGACAACGTACTGACGGC-TTTGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAG--GCCAGTTGAACT-GGCAGCAGTTCGCTCTATCCCGAATTGATAAAAAGAACCATATACTAAGACCGATCCTACCTCCAGGACAAATCACCACAAAGGAGCTTGGCACCGTCATGCGCTCGCTAGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTATTTTCCCGTGTCCCCAAGTCCA-CCAGCAAGACGGATATTGACCCGCCGATAGAGTTCTTG Penicillium_canescens_IMI149218_Canescentia_CaM_KP027409_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACT-GGCAGCAGTGTCTCCCGTCCCCGAATT--GAAAGAAACAATATACTAAGACCAATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAATGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCGCCAATAGAGTTCTTG Penicillium_canescens_CBS300.48T_Canescentia_CaM_KJ867009_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACT-GGCAGCAGTGTCTCCCGTCCCCGAATT--GAAAGAAACAATATACTAAGACCAATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAATGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCGCCAATAGAGTTCTTG Penicillium_murciacum_CBS161.81T_Canescentia_CaM_KP016824_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACAGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACTTCGCCC--GACAA--CCCAGTTGAATT-GGCAGCAGTGTCTCCCGTCCCCGAATT--GAGAGAAATAATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_murciacum_CBS458.69_Canescentia_CaM_KP016822_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACAGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACTTCGCCC--GACAA--CCCAGTTGAATT-GGCAGCAGTGTCTCCCGTCCCCGAATT--GAGAGAAATAATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCATCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_cf_murciacum_IBT31963_Canescentia_CaM_JX157369_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACAGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACTTCGCCC--GACAA--CCCAGTTGAATT-GGCAGCAGTGTCTCCCATCCCCGAATT--GAGAGAAATAATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCACCGATAGAGTTCTTG Penicillium_cf_murciacum_CBS414.68_Canescentia_CaM_KP016821_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACAGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACTTCGCCC--GACAA--CCCAGTTGAATT-GGCAGCAGTGTCTCCCATCCCCGAATT--GAGAGAAATAATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCACCGATAGAGTTCTTG Penicillium_radiatolobatum_IBT31959_Canescentia_CaM_JX157354_xx AAGT-GTTTCT-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTTCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACTTCGCCC--GACAA--CCCAGTTGAATT-GGCAGCAGTGTCCCCCGTCCCCGAATT--GAGAGATACAATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_radiatolobatum_IBT31958_Canescentia_CaM_JX157359_xx AAGT-GTTTCT-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTTCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACTTCGCCC--GACAA--CCCAGTTGAATT-GGCAGCAGTGTCCCCCGTCCCCGAATT--GAGAGATACAATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_radiatolobatum_CBS340.79T_Canescentia_CaM_KP016825_xx AAGT-GTTTCT-ACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTTCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACTTCGCCC--GACAA--CCCAGTTGAATT-GGCAGCAGTGTCTCCCGTCCCCGAATT--GAGAGATACAATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-CAAACGAGATGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_yarmokense_CBS410.69T_Canescentia_CaM_KJ867013_xx AAGT-GTTTCC-ACGCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACATCGCCC--GACAA--CCCAGTTGAACT-GGCAGCAGTGTCTCCCATCCCCGAATT--GAAAGAACCAATATACTAAGACCAATTCCACCTCCAGGACAAATTACCACTAAGGAGCTTGGCACCGTCATGCGCTCTCTAGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC-TAAACGAGATGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_echinatum_NRRL917T_Canescentia_CaM_KJ867021_xx AAGT-GTTTCC-CTCCGTGGATTG-AAGT-TATGAAAGCGGGACAACATACTGACTGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACT-GGCAGCAGTGTCTGCTGCACCCGAATT--GAAAGAAACGATATACTAAGACCGATTCCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAATCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCTGTGTTCACTAGATCC-CAAACGAGATGGCTATTGACCCGTCGATAGAGTTCTTG Penicillium_griseoazureum_CBS162.42T_Canescentia_CaM_KP016823_xx AAGT-GTTTCC-CTCCGTGGATTG-AAGT-TATGAAAGCTGGACAACATACTGACTGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACT-GGCAGCAGTGTCTGCTGCCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTCCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGATCC-CAAACGAGATGGCTATTGACCCGTCGATAGAGTTCTTG Penicillium_nigricans_CBS354.48T_Canescentia_CaM_KJ867012_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TATGAAGGCTGGACAACATACTGACTGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGGCCTCGCCC--GACAA--CCCAGTTGAACT-GGCAGCAGTGTCTGCTACCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTCCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGATCC-CAAACGAGATGGCTATTGACCCGTCGATAGAGTTCTTG Penicillium_dunedinense_CBS138218T_Canescentia_CaM_KJ775405_xx AAGT-GTTTCT-ACCCGTGGATTG-AAGT-TATGAAGGCTGGACAGCATACTGACGGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACTGGGCAGCAGACACTGCTGCCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTTCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-CAAACGAGACGGCTATTGACCCGTCGATAGAGTTCTTG Penicillium_granatense_CBS166.81T_Canescentia_CaM_KJ866998_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TATGAAGGCTGGACAACATACTGACGGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACTGGGCAGCAGACACTGCTGCCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTTCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-CAAACGAGACGGCTATTGACCCGTCGATAGAGTTCCTG Penicillium_janczewskii_CBS221.28T_Canescentia_CaM_KJ867001_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TATGAAGGCTGGACAACATACTGACGGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACTGGGCAGCAGACACTGCTGCCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTTCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-CAAACGAGACGGCTATTGACCCGTCGATAGAGTTCCTG Penicillium_janczewskii_CBS413.68_Canescentia_CaM_KJ867014_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TATGAAGGCTGGACAACATACTGACGGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACTGGGCAGCAGACACTGCTGCCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTTCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-CAAACGAGACGGCTATTGACCCGTCGATAGAGTTCCTG Penicillium_janczewskii_CBS279.47_Canescentia_CaM_KJ867008_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TATGAAGGCTGGACAACATACTGACGGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACTGGGCAGCAGACACTGCTGCCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTTCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-CAAACGAGACGGCTATTGACCCGTCGATAGAGTTCCTG Penicillium_nigricans_var_sulphuratum_CBS744.70T_Canescentia_CaM_KJ867018_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TATGAAGGCTGGACAACATACTGACGGC-TTTGATGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACTGGGCAGCAGACACTGCTGCCCCCGAATT--GAAAGAAACGATATACTAAGACCGATTTCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-CAAACGAGACGGCTATTGACCCGTCGATAGAGTTCCTG Penicillium_cf_canescens_KAS3618_Canescentia_CaM_na_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAATGCTGGACAACATACTGACGGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACT-GACAGCAGTGTCTGCTGTCCCCGAAGT--GAAAGAAACAATATACTAAGACCGATCCCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCATTTCCACTAGGCCC-CAACCGAGACGGCTATTGACCCGTCGATAGAGTTCTTG Penicillium_cf_canescens_KAS3622_Canescentia_CaM_na_xx AAGT-GTTTCC-ACCCGTGGATTG-AAGT-TGTGAATGCTGGACAACATACTGACGGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--CCCAGTTGAACT-GACAGCAGTGTCTGCTGTCCCCGAAGT--GAAAGAAACAATATACTAAGACCGATCCCACCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAATGGCACTATTGACTTCCCC-GGTACTTTCCCATTTCCACTAGGCCC-CAACCGAGACGGCTATTGACCCGTCGATAGAGTTCTTG Penicillium_jensenii_CBS327.59T_Canescentia_CaM_AY443490_xx AAGT-GTTTCCAACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--GCCAGTTGAAGT-GGCAGCAGTGTCTCCTGTTCCCGAATT---GAAAGAACGATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC--ACATGAGACGG-TATTAACCCGCCAATAGAGTTCTTG Penicillium_jensenii_CBS216.28_Canescentia_CaM_KJ867000_xx AAGT-GTTTCCAACCCGTGGATTG-AAGT-TGTGAAGGCTGGACAACATACTGACGGC-TTTGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--GACAA--GCCAGTTGAAGT-GGCAGCAGTGTCTCCTGTTCCCGAATT---GAAAGAACGATATACTAAGACCGATCCCACCTCCAGGACAAATTACCACCAAGGAGCTTGGCACCGTCATGCGCTCTCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCCCTAGACCC--ACATGAGACGG-TATTAACCCGCCAATAGAGTTCTTG Penicillium_novaezeelandiae_clade1_CBS138942T_Canescentia_CaM_JX157468_xx AAGT-GATATC-ACCCCCGCATTG-AAGT-TGTGACATCAGGACAACATACTAACGGC-TTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCA--GGCAG--CCCAGTTGAACT-GGCAGCGGCACTCTTTTCCCCGAAGTG---AAGAGAACGATATACTAAGACCGATCTCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTGTTTCGTGACATCTAGACCC-CCAACGAGATGGCTATTGACCCGCCGATAGAATTCTTG Penicillium_novaezeelandiae_clade1_CBS138956_Canescentia_CaM_JX157402_xx AAGT-GATATC-ACCCCCGCATTG-AAGT-TGTGACATCAGGACAACATACTAACGGC-TTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCA--GGCAG--CCCAGTTGAACT-GGCAGCGGCACTCTTTTCCCCGAAGTG---AAGAGAACGATATACTAAGACCGATCTCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTGTTTCGTGACATCTAGACCC-CCAACGAGATGGCTATTGACCCGCCGATAGAATTCTTG Penicillium_novaezeelandiae_clade1_CBS138955_Canescentia_CaM_JX157401_xx AAGT-GATATC-ACCCCCGCATTG-AAGT-TGTGACATCAGGACAACATACTAACGGC-TTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCA--GGCAG--CCCAGTTGAACT-GGCAGCGGCACTCTTTTCCCCGAAGTG---AAGAGAACGATATACTAAGACCGATCTCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTGTTTCGTGACATCTAGACCC-CCAACGAGATGGCTATTGACCCGCCGATAGAATTCTTG Penicillium_novaezeelandiae_clade2_CBS138949T_Canescentia_CaM_JX157353_xx AAGT-GATATC-ACCCCCGCATTG-AAGT-TGTGACACCAGGGCAACATACTGATGGC-TTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTTGCCT--GGCAG--CCCAGTTGAACT-GGCAGCGGCTCTCTTTTCCCCGAAGTG---AAGAGAACGATATACTAAGACCGATCCCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTGCCCCGTGACCTTTAGACCC-CCAACGAGACGGCTATTGACCCGCCGATAGAATTCTTG Penicillium_novaezeelandiae_clade2_CBS138936_Canescentia_CaM_JX157352_xx AAGT-GATATC-ACCCCCGCATTG-AAGT-TGTGACACCAGGGCAACATACTGATGGC-TTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTTGCCT--GGCAG--CCCAGTTGAACT-GGCAGCGGCTCTCTTTTCCCCGAAGTG---AAGAGAACGATATACTAAGACCGATCCCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTGCCCCGTGACCTTTAGACCC-CCAACGAGACGGCTATTGACCCGCCGATAGAATTCTTG Penicillium_novaezeelandiae_clade2_CBS138938_Canescentia_CaM_JX157356_xx AAGT-GATATC-A-CCCCGCATTG-AAGT-TGTGACACCAGGGCAACATACTGATGGC-TTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTTGCCT--GGCAG--CCCAGTTGAACT-GGCAGCGGCTCTCTTTTCCCCGAAGTG---AAGAGAACGATATACTAAGACCGATCCCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCT-GGTACTGCCCCGTGACCTTTAGACCC-CCAACGAGACGGCTATTGACCCGCCGATAGAATTCTTG Penicillium_novaezeelandiae_CBS546.77_Canescentia_CaM_KP016828_xx AAGT-GATATC-ACCCTCGCATTG-AAGT-TGTGATATCAGGGCAACATAATGACGGC-TTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCT--GGCAG--CCCAGTTGAACT-GGCAGCGGCTCTCTTTTCCCTAAAGTG---AAGAGAACGATATACTAAGACCGATCCCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTGTCCCGTGACCTCTAGACCC-CCAATGAGACGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_novaezeelandiae_CBS137.41T_Canescentia_CaM_KJ866996_xx AAGT-GATATC-ACCCTCGCATTG-AAGTCTGTGATATCAGGGCAACATACTGACGGCTTTGGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCT--GGCAG--CCCAGTTGAACT-GGCAGCGGCTCTCTTTTCCCTAAAGTG---AAGAGAACGATATACTAAGACCGATCCCACCTTCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCCGGGTACTGTCCCGTGACCTCTAGACCC-CCAATGAGACGGCTATTGACCCGCCGATAGAGTTCTTG Penicillium_cf_corraligerum_KAS2101_Canescentia_CaM_na_xx AAGT-GACCAC-ATCCCCGGATTG-AAGG-TGTGACAGCTGGACAACATACTGACGGC-TTGGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--ATGAACTCCCGAGTGGGCT-GGCAGCCGTTCGCTCTATCCTGAATTG--AATGAGGACGATATACTAAGACCGACGCGTCCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-TCTGCGAAACGGATGTTGACCCGCCGATAGAATTCTTG Penicillium_cf_corraligerum_KAS2203_Canescentia_CaM_na_xx AAGT-GACCAC-ATCCCCGGATTG-AAGG-TGTGACAGCTGGACAACATACTGACGGC-TTGGTTGCGAAATAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCC--ATGAACTCCCGAGTGGGCT-GGCAGCCGTTCGCTCTATCCTGAATTG--AATGAGGACGATATACTAAGACCGACGCGTCCTCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCGCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCGTGTCCACTAGACCC-TCTGCGAAACGGATGTTGACCCGCCGATAGAATTCTTG Penicillium_coralligerum_CBS123.65T_Canescentia_CaM_KJ866994_xx AAGTGGATCCC-ATCTCCGGATTG-AAGT-CGTGGCAGTGGGACAACATACTAACGAC---TGTTGCGAAACAGGACAAGGATGGCGATGTGTAAGTGTGACCTCGCCCGAGACAG--CCCAGTTGAACT-GGCAGCAGTTCGCTCTGATCCGAATTG----AAAGGACGATATACTAAGACCAATCCC-TCTCCAGGACAAATCACCACAAAGGAGCTTGGCACCGTCATGCGCTCCCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGATAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCATGTTCTCTAGTCCC-CCAGCGAGACGAATATTGACCCGCCGATAGAGTTCTTG Penicillium_coralligerum_CBS114.69_Canescentia_CaM_KJ866991_xx AAGT-GATCCC-ATCTCCGGATGG-AAGT-CGTGGCAGTGGGACAACATACTAACGAC---TGTTGCGAAACAGGACAAGGATGGCGATG-GTAAGTGTGACCTCGCCCGAGACAG--CCCAGTTGAACT-GGCAGCAGTTCGCTCTGATCCGAATTG----AAAGGACGATATACTAAGACCAATCCC-TCTGCAGGACAAATCACCACAAAGGAGCTTGGCACCGTCATGCGCTCCCTGGGCCAGAACCCCTCCGAGTCCGAGCTGCAGGACATGATCAACGAGGTTGACGCCGATAACAACGGCACCATTGACTTCCCC-GGTACTTTCCCATGTTCTCTAGTCCC-CCAGCGAGACGAATATTGACCCGCCGATAGAGTTCTTG OUTGROUP_Penicillium_brevicompactum_CBS257.29T_Brevicompacta_CaM_AY484813_xx GAGT-AACCCC-ACGTGTCAGATA---------AGTGACGGGAGCGCTGACCGGCGG--TTTTTCGTGAAATAGGACAAGGATGGCGATG-GTGAGTGATCGCGGATCT--AACCT--CCAGAGCGCAAT---------------------------------------GAAATCCTAATGC-----ACCTCCCCAGGACAAATCACCACCAAGGAGCTTGGCACCGTCATGCGCTCCCTGGGCCAGAACCCCTCCGAGTCTGAACTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGACTTCCCC-GGTACTTGCCTCTACCCCCCACGAGA-TCTCAGAGACGGCTATTGACAAACGATCAGAATTCCTG ; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = monophyl; Pset gapmode = missing; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; Savetrees format = nexus brlens = yes maxdecimals = 0 file = Canescentia_CaM__MP_CaM_parsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = Canescentia_CaM__MP_CaM_parsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = Canescentia_CaM__MP_CaM_heuristicBS.tre; Log stop = yes; END; begin mrbayes; log start filename = Log_Canescentia_CaM__CaM.out; Lset nst = 2 rates = propinv; Prset statefreqpr = fixed ( equal ); mcmcp nruns = 2 nchains = 4 stoprule = yes stopval = 0.01 ngen = 10000000 Filename = Canescentia_CaM__BI_CaM; mcmc; sump; sumt burninfrac = 0.25 conformat = simple; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Canescentia_CaM') = unord: 1 - 388; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Canescentia_CaM') = universal: 1 - 388; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Canescentia_CaM') = 'Jukes-Cantor': 1 - 388; END; BEGIN TREES; Title 'Canescentia_BI_CaM'; LINK Taxa = Taxa; TRANSLATE [0] 1 Penicillium_antarticum_CBS100492T_Canescentia_CaM_KP016826_xx, [1] 2 Penicillium_antarticum_CBS116939_Canescentia_CaM_JX157255_xx, [2] 3 Penicillium_antarticum_CBS116938_Canescentia_CaM_KP016827_xx, [3] 4 Penicillium_atrovenetum_CBS241.56T_Canescentia_CaM_KJ867004_xx, [4] 5 Penicillium_atrovenetum_CBS243.56_Canescentia_CaM_JX157411_xx, [5] 6 Penicillium_canescens_IMI149218_Canescentia_CaM_KP027409_xx, [6] 7 Penicillium_canescens_CBS300.48T_Canescentia_CaM_KJ867009_xx, [7] 8 Penicillium_murciacum_CBS161.81T_Canescentia_CaM_KP016824_xx, [8] 9 Penicillium_murciacum_CBS458.69_Canescentia_CaM_KP016822_xx, [9] 10 Penicillium_cf_murciacum_IBT31963_Canescentia_CaM_JX157369_xx, [10] 11 Penicillium_cf_murciacum_CBS414.68_Canescentia_CaM_KP016821_xx, [11] 12 Penicillium_radiatolobatum_IBT31959_Canescentia_CaM_JX157354_xx, [12] 13 Penicillium_radiatolobatum_IBT31958_Canescentia_CaM_JX157359_xx, [13] 14 Penicillium_radiatolobatum_CBS340.79T_Canescentia_CaM_KP016825_xx, [14] 15 Penicillium_yarmokense_CBS410.69T_Canescentia_CaM_KJ867013_xx, [15] 16 Penicillium_echinatum_NRRL917T_Canescentia_CaM_KJ867021_xx, [16] 17 Penicillium_griseoazureum_CBS162.42T_Canescentia_CaM_KP016823_xx, [17] 18 Penicillium_nigricans_CBS354.48T_Canescentia_CaM_KJ867012_xx, [18] 19 Penicillium_dunedinense_CBS138218T_Canescentia_CaM_KJ775405_xx, [19] 20 Penicillium_granatense_CBS166.81T_Canescentia_CaM_KJ866998_xx, [20] 21 Penicillium_janczewskii_CBS221.28T_Canescentia_CaM_KJ867001_xx, [21] 22 Penicillium_janczewskii_CBS413.68_Canescentia_CaM_KJ867014_xx, [22] 23 Penicillium_janczewskii_CBS279.47_Canescentia_CaM_KJ867008_xx, [23] 24 Penicillium_nigricans_var_sulphuratum_CBS744.70T_Canescentia_CaM_KJ867018_xx, [24] 25 Penicillium_cf_canescens_KAS3618_Canescentia_CaM_na_xx, [25] 26 Penicillium_cf_canescens_KAS3622_Canescentia_CaM_na_xx, [26] 27 Penicillium_jensenii_CBS327.59T_Canescentia_CaM_AY443490_xx, [27] 28 Penicillium_jensenii_CBS216.28_Canescentia_CaM_KJ867000_xx, [28] 29 Penicillium_novaezeelandiae_clade1_CBS138942T_Canescentia_CaM_JX157468_xx, [29] 30 Penicillium_novaezeelandiae_clade1_CBS138956_Canescentia_CaM_JX157402_xx, [30] 31 Penicillium_novaezeelandiae_clade1_CBS138955_Canescentia_CaM_JX157401_xx, [31] 32 Penicillium_novaezeelandiae_clade2_CBS138949T_Canescentia_CaM_JX157353_xx, [32] 33 Penicillium_novaezeelandiae_clade2_CBS138936_Canescentia_CaM_JX157352_xx, [33] 34 Penicillium_novaezeelandiae_clade2_CBS138938_Canescentia_CaM_JX157356_xx, [34] 35 Penicillium_novaezeelandiae_CBS546.77_Canescentia_CaM_KP016828_xx, [35] 36 Penicillium_novaezeelandiae_CBS137.41T_Canescentia_CaM_KJ866996_xx, [36] 37 Penicillium_cf_corraligerum_KAS2101_Canescentia_CaM_na_xx, [37] 38 Penicillium_cf_corraligerum_KAS2203_Canescentia_CaM_na_xx, [38] 39 Penicillium_coralligerum_CBS123.65T_Canescentia_CaM_KJ866994_xx, [39] 40 Penicillium_coralligerum_CBS114.69_Canescentia_CaM_KJ866991_xx, [40] 41 OUTGROUP_Penicillium_brevicompactum_CBS257.29T_Brevicompacta_CaM_AY484813_xx; TREE Canescentia_BI_CaM1 = (1:0.001479184,2:0.001552637,3:0.001568837,((4:0.001465384,5:0.001628639)1.000:0.02473283,(((((((6:0.001641708,7:0.001543931)0.994:0.006244841,15:0.01970443)0.802:0.003804977,((8:0.001558791,9:0.003605931,(10:0.00157732,11:0.00152783)1.000:0.008162805)0.994:0.006006275,((12:0.001529852,13:0.001655405)0.978:0.003612783,14:0.001465248)1.000:0.00858058)0.999:0.008508265)0.983:0.008063525,((((16:0.01197824,17:0.001583834)1.000:0.008315391,18:0.006093995)1.000:0.00796569,(19:0.006587605,(20:0.00168922,21:0.001554226,22:0.001628568,23:0.001380246,24:0.001487781)0.775:0.003611162)0.998:0.01116255)0.998:0.01086883,(25:0.001622672,26:0.001581653)1.000:0.01954168)0.995:0.01705348)0.744:0.006624156,(27:0.001511363,28:0.00146725)0.995:0.02161638)0.878:0.03093077,41:0.2854991)0.876:0.03092984,(((29:0.001510363,30:0.001613768,31:0.001491573)1.000:0.02164564,(32:0.001490601,33:0.001626204,34:0.001551278)1.000:0.01360813)0.774:0.005320178,(35:0.003722234,36:0.001480398)1.000:0.01388593)1.000:0.05110123)0.890:0.01495674,(37:0.001497406,38:0.00158963)1.000:0.07020217,(39:0.001600649,40:0.005956345)1.000:0.047902)0.999:0.03572219); TREE Canescentia_BI_CaM2 = (1:0.001479184,2:0.001552637,3:0.001568837,((4:0.001465384,5:0.001628639):0.02473283,(((((((6:0.001641708,7:0.001543931):0.006244841,15:0.01970443):0.003804977,((8:0.001558791,9:0.003605931,(10:0.00157732,11:0.00152783):0.008162805):0.006006275,((12:0.001529852,13:0.001655405):0.003612783,14:0.001465248):0.00858058):0.008508265):0.008063525,((((16:0.01197824,17:0.001583834):0.008315391,18:0.006093995):0.00796569,(19:0.006587605,(20:0.00168922,21:0.001554226,22:0.001628568,23:0.001380246,24:0.001487781):0.003611162):0.01116255):0.01086883,(25:0.001622672,26:0.001581653):0.01954168):0.01705348):0.006624156,(27:0.001511363,28:0.00146725):0.02161638):0.03093077,41:0.2854991):0.03092984,(((29:0.001510363,30:0.001613768,31:0.001491573):0.02164564,(32:0.001490601,33:0.001626204,34:0.001551278):0.01360813):0.005320178,(35:0.003722234,36:0.001480398):0.01388593):0.05110123):0.01495674,(37:0.001497406,38:0.00158963):0.07020217,(39:0.001600649,40:0.005956345):0.047902):0.03572219); END; BEGIN TREES; Title 'Canescentia_MP_CaM'; LINK Taxa = Taxa; TRANSLATE [0] 1 Penicillium_antarticum_CBS100492T_Canescentia_CaM_KP016826_xx, [1] 2 Penicillium_antarticum_CBS116939_Canescentia_CaM_JX157255_xx, [2] 3 Penicillium_antarticum_CBS116938_Canescentia_CaM_KP016827_xx, [3] 4 Penicillium_atrovenetum_CBS241.56T_Canescentia_CaM_KJ867004_xx, [4] 5 Penicillium_atrovenetum_CBS243.56_Canescentia_CaM_JX157411_xx, [5] 6 Penicillium_canescens_IMI149218_Canescentia_CaM_KP027409_xx, [6] 7 Penicillium_canescens_CBS300.48T_Canescentia_CaM_KJ867009_xx, [7] 8 Penicillium_murciacum_CBS161.81T_Canescentia_CaM_KP016824_xx, [8] 9 Penicillium_murciacum_CBS458.69_Canescentia_CaM_KP016822_xx, [9] 10 Penicillium_cf_murciacum_IBT31963_Canescentia_CaM_JX157369_xx, [10] 11 Penicillium_cf_murciacum_CBS414.68_Canescentia_CaM_KP016821_xx, [11] 12 Penicillium_radiatolobatum_IBT31959_Canescentia_CaM_JX157354_xx, [12] 13 Penicillium_radiatolobatum_IBT31958_Canescentia_CaM_JX157359_xx, [13] 14 Penicillium_radiatolobatum_CBS340.79T_Canescentia_CaM_KP016825_xx, [14] 15 Penicillium_yarmokense_CBS410.69T_Canescentia_CaM_KJ867013_xx, [15] 16 Penicillium_echinatum_NRRL917T_Canescentia_CaM_KJ867021_xx, [16] 17 Penicillium_griseoazureum_CBS162.42T_Canescentia_CaM_KP016823_xx, [17] 18 Penicillium_nigricans_CBS354.48T_Canescentia_CaM_KJ867012_xx, [18] 19 Penicillium_dunedinense_CBS138218T_Canescentia_CaM_KJ775405_xx, [19] 20 Penicillium_granatense_CBS166.81T_Canescentia_CaM_KJ866998_xx, [20] 21 Penicillium_janczewskii_CBS221.28T_Canescentia_CaM_KJ867001_xx, [21] 22 Penicillium_janczewskii_CBS413.68_Canescentia_CaM_KJ867014_xx, [22] 23 Penicillium_janczewskii_CBS279.47_Canescentia_CaM_KJ867008_xx, [23] 24 Penicillium_nigricans_var_sulphuratum_CBS744.70T_Canescentia_CaM_KJ867018_xx, [24] 25 Penicillium_cf_canescens_KAS3618_Canescentia_CaM_na_xx, [25] 26 Penicillium_cf_canescens_KAS3622_Canescentia_CaM_na_xx, [26] 27 Penicillium_jensenii_CBS327.59T_Canescentia_CaM_AY443490_xx, [27] 28 Penicillium_jensenii_CBS216.28_Canescentia_CaM_KJ867000_xx, [28] 29 Penicillium_novaezeelandiae_clade1_CBS138942T_Canescentia_CaM_JX157468_xx, [29] 30 Penicillium_novaezeelandiae_clade1_CBS138956_Canescentia_CaM_JX157402_xx, [30] 31 Penicillium_novaezeelandiae_clade1_CBS138955_Canescentia_CaM_JX157401_xx, [31] 32 Penicillium_novaezeelandiae_clade2_CBS138949T_Canescentia_CaM_JX157353_xx, [32] 33 Penicillium_novaezeelandiae_clade2_CBS138936_Canescentia_CaM_JX157352_xx, [33] 34 Penicillium_novaezeelandiae_clade2_CBS138938_Canescentia_CaM_JX157356_xx, [34] 35 Penicillium_novaezeelandiae_CBS546.77_Canescentia_CaM_KP016828_xx, [35] 36 Penicillium_novaezeelandiae_CBS137.41T_Canescentia_CaM_KJ866996_xx, [36] 37 Penicillium_cf_corraligerum_KAS2101_Canescentia_CaM_na_xx, [37] 38 Penicillium_cf_corraligerum_KAS2203_Canescentia_CaM_na_xx, [38] 39 Penicillium_coralligerum_CBS123.65T_Canescentia_CaM_KJ866994_xx, [39] 40 Penicillium_coralligerum_CBS114.69_Canescentia_CaM_KJ866991_xx, [40] 41 OUTGROUP_Penicillium_brevicompactum_CBS257.29T_Brevicompacta_CaM_AY484813_xx; TREE Canescentia_MP_CaM_PAUP_1 = (1:0.0,(2:0.0,3:0.0,((4:0.0,5:0.0):8,((((((((6:0.0,7:0.0):2,15:8):1,((8:0.0,9:1,(10:0.0,11:0.0):3):2,((12:0.0,13:0.0):1,14:0.0):3):3):2,((((16:5,17:0.0):3,18:2):3,(19:2,(20:0.0,21:0.0,22:0.0,23:0.0,24:0.0):1):4):5,(25:0.0,26:0.0):7):7):3,(27:0.0,28:0.0):8):17,((37:0.0,38:0.0):17,41:69):19):6,(((29:0.0,30:0.0,31:0.0):9,(32:0.0,33:0.0,34:0.0):5):2,(35:1,36:0.0):5):19):7,(39:0.0,40:2):16):5):16):0.0); TREE Canescentia_MP_CaM_PAUP_2 = (1:0.0,(2:0.0,3:0.0,((4:0.0,5:0.0):10,(((((((6:0.0,7:0.0):2,15:8):1,((8:0.0,9:1,(10:0.0,11:0.0):3):2,((12:0.0,13:0.0):1,14:0.0):3):3):2,((((16:5,17:0.0):3,18:2):3,(19:2,(20:0.0,21:0.0,22:0.0,23:0.0,24:0.0):1):4):5,(25:0.0,26:0.0):7):7):3,(27:0.0,28:0.0):8):18,(((29:0.0,30:0.0,31:0.0):9,(32:0.0,33:0.0,34:0.0):5):2,(35:1,36:0.0):5):20):8,(((37:0.0,38:0.0):16,41:70):19,(39:0.0,40:2):14):6):4):14):0.0); TREE Canescentia_MP_CaM_PAUP_3 = (1:0.0,(2:0.0,3:0.0,((4:0.0,5:0.0):10,((((((((6:0.0,7:0.0):2,15:8):1,((8:0.0,9:1,(10:0.0,11:0.0):3):2,((12:0.0,13:0.0):1,14:0.0):3):3):2,((((16:5,17:0.0):3,18:2):3,(19:2,(20:0.0,21:0.0,22:0.0,23:0.0,24:0.0):1):4):5,(25:0.0,26:0.0):7):7):3,(27:0.0,28:0.0):8):19,(((29:0.0,30:0.0,31:0.0):9,(32:0.0,33:0.0,34:0.0):5):2,(35:1,36:0.0):5):19):8,(39:0.0,40:2):17):3,((37:0.0,38:0.0):12,41:74):19):4):14):0.0); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1450382376294; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3959388429015225429; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 525226166033650912; mqVersion 303; checksumv 0 3 1651156788 null getNumChars 388 numChars 388 getNumTaxa 41 numTaxa 41 short true bits 15 states 15 sumSquaresStatesOnly 280880.0 sumSquares 280880.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 241; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 875 85; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #525226166033650912 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 459 392; setLocation 875 85; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;