#NEXUS [written Thu Dec 17 14:30:30 EST 2015 by Mesquite version 3.03 (build 702) at ONOTTRA670030D/10.117.218.113] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=29; TAXLABELS Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508 Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503 Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504 Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507 Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505 Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506 Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450 Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509 Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645 Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513 Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548 Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545 Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263 Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264 Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443 Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483 Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715 Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719 Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714 Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716 Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717 Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718 Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223 Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222 Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224 ; END; BEGIN CHARACTERS; TITLE 'Charlesia_BenA'; DIMENSIONS NCHAR=465; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508 TGGTACGTCCC-----GTTCAC----------CCATCCC-----------------------GGAGTCATCAATTGATGCT--CGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACAAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT---GGAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503 TGGTACGTCCC-----GTTCAC----------CCATCCC-----------------------GGAGTCATCAATTGATGCT--CGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT---GGAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504 TGGTACGTCCC-----GTTCAC----------CCATCCC-----------------------GGAGTCATCAATTGATGCT--CGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT---GGAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507 TGGTACGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCAATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCTCGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT--CGAAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505 TGGTACGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCAATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCTCGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT--CGAAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506 TGGTACGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCAATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCTCGAGAAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTTACACCAATGTGAGTAGAGCGAT--CGAAATGTCTCTGACC------TTTGTTTACTTTTAGGCTAGCGGTGACCGTTACGTTCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450 ------------------------------------------------------------------------ATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548 TGGTATGTCCC-----GTTCAC----------CCTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTAAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545 TGGTATGTCCC-----GTTCAC----------ACTCCCC-----------------------GGAGTCATCCATTGATGCT--TGCCCA---------CGAACATCTTGC-TAATTTTGTTATAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGTGATGGACAGTGAGT-TTGGATCACGGTCAATTCGTCCAGAACAGCGGTCTGATAT---TTTTCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTCACGTCAATGCGAGCAGAGCGGT--CGAAATGTCTCTGACC------TTTGTTTACCTTTAGGCCAGCGGTGACCGTTACGTTCCCCGTTCCGTCTTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTTCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263 TGGTACGTGCCCATCTGATCCC----------CCCCCGC-----------------------GAGGATGTCAATTGATGCT--TCCCAA---------CGAACACAATGC-TAATTAAAATACAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGCGATGGCCAGTAAGT-TTCGAT--TGATGAACTCCTCACGAATGGCGTTCTGACTT---TTTCCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTGATGATGGTATGTGTGGATCTGTAATTCAATATTCTAACCT------TTGTTTTGCTTTTAGGCCAGCGGTGACCGCTACGTTCCTCGTTCCGTCCTGGTTGATTTGGAGCCTGGTACCATGGACGCTGTTCGTGCCGGTCCTTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264 TGGTACGTGCCCATCTGATCCC----------CCCCCGC-----------------------GAGGATGTCAATTGATGCT--TCCCAA---------CGAACACAATGC-TAATTAAAATACAGGCAGCAGATTGCTAGCGAGCACGGCCTCGACGGCGATGGCCAGTAAGT-TTCGAT--TGATGAACTCCTCACGAATGGCGTTCTGACTT---TTTCCTTAGCTTCACCGGTGCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCACGTAAGTTGATGATGGTATGTGTGGATCTGTAATTCAATATTCTAACCT------TTGTTTTGCTTTTAGGCCAGCGGTGACCGCTACGTTCCTCGTTCCGTCCTGGTTGATTTGGAGCCTGGTACCATGGACGCTGTTCGTGCCGGTCCTTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443 TGGTATGTGCC-----GTTCCA----------CCCCTCCA----------------------GCGATCATCAATTGCTACG--TTTCTG----------GGATTGAATGC-TAATCAATTTATAGGCAGCAGATTGCTTCCGAGCACGGTCTCGACGGCGATGGCCAGTGAGTGTTTGGTGACGATGGATTC-TTCGGAATGGCGGTCTGATAT---TTTTTTTAGCTTCACCGGTGCCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACCACGTAGGTTTTTACCGGCAAAGATAGAC------GAAAGTCTCTCTAA---------CGATGTGAAATTAGGCCAGCGGTGACCGCTACGTCCCCCGTTCCGTCCTTGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCTTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483 TGGTATGTGCC-----GGTTCA----------CCCCTCA-----------------------GCGATCTTCAATTGCTACT--TTTCAG----------GGATTCAATGC-TAATCGAGTTATAGGCAGCAGATTGCTTCCGAGCACGGTCTCGACGGCGATGGCCAGTGAGT-TCTGGTTATGATGGATTC-TTCAGAATGGCGGTCTGATAT---TTTTTTTAGCTTCACCGGTGCCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACCACGTAGGTTTTTACCAACCGGGATAGAC------AAGACTATCTCTAA---------TGATGTGAATCTAGGCCAGCGGTGACCGCTACGTCCCCCGTTCCGTCCTGGTTGACTTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na TGGTACGTGTT-----TACCCC----------CTCTT-------------------------CGGGCCTACAATTGCTGCC--CATTGGATTCGATGCACGACAGCACGC-TAACTCAATTACAGGCAGCAGATTGCCAGTGAGCACGGCCTTGACGGCGATGGCCAGTAAGT-GGTGTATAGGTGGAGTTGGAAGAGAATGGCGGTCTGATGT---TTTTCTTAGCTTCACTGGTTCCTCCGACCTCCAGCTGGAGCGTATGAACGTCTACTTCAACCATGTGAGTGTCAACCACAAACTGCAT--------TTTAGGGCTTCAATTCTAACAATAATGCTATTACTAGGCCAGCGGTGACCGCTACGTTCCCCGTTCCGTCCTGGTTGATCTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGCCCCGACAACTTCGTCT Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715 TGGTACGTGCC-----ACTTCC----------CGACCAAAAAAAAAACATCCCAGCACGAC-AACAACACCAATTGCTCTGA-GGGATG---------GACCGAATGTGC-TGACTCAACCGCAGGCAAACCATTGCTGGCGAGCACGGCCTTGACGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGATGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTCTCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCTGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719 TGGTACGTGCC-----ACTTCC----------CGTC-AAAAAAAAAACATCCCAGCACGAC-AACAACACCAATTGCTCGGA-TGAATG---------GGCCAATTGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGCTGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTTCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714 TGGTACGTGCC-----ACTTCC----------CGCC---AAAAAAAACATCCCAGCACGAC-AACAACACCAATTGCTCGAA-TGGATG---------GACCGGTTGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAACGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACGA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTCCTAGGCTAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCTGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716 TGGTACGTGCC-----ACTTCC----------CGCC--AAAAAAAAACATCCCAGGACGAC-AACAACACCAATTGCTTGGA-TGGATG---------GAACGAATGTGC-TGACTCAACTACAGGCAGACCATTGCTGGTGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATG----TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717 -----------------------------------------------CATCCCTGCACGAC-AACAACACCAATTGCTTGGATTGGATT---------GGACGAATGTGCTTGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATACGA-GGCGGAATGGCGGTCTGATGT---TTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCACCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTTTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na TGGTACGTGCC-----ACTCCC----------CGCC-AAAAAAAAAACATCCCAGCACGACAAACAACACCAATTGCTCGGA-TGGATG---------GACCGAATGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATGCGA-GGCGGAGTGGCGGTCTGATGT---TTTTGCTAGATACCAGGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTTTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCATCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na TGGTACGTGCC-----ACTCCC----------CGCC--AAAAAAAAACATCCCAGCACGACAAACAACACCAATTGCTCGGA-TGGATG---------GACCGAATGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATGCGA-GGCGGAGTGGCGGTCTGATGT---TTTTGCTAGATACCAGGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCATCTAACCGATGGATTGTTTGTTTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na TGGTACGTGCC-----ACTCCC----------CGCC-AAAAAAAAAACATCCCAGCACGACAAACAACACCAATTGCTCGGA-TGGATG---------GACCGAATGTGC-TGACTCAACCACAGGCAAACCATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTCGGCTACCATGCGA-GGCGGAGTGGCGGTCTGATGT---TTTTGCTAGATACCAGGGCACCTCCGACCTCCAGCTGGAGCGGATGAGCGTTTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGATGCATCTAACCGATGGATTGTTTG-TTCCTAGGCCAGCGGTGACAAGTACGTTCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGCCCCTTCGGCAAGCTCTTCCGTCCCGATAACTTCGTCT Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718 TGGTACGTGCC-----ACTTCC----------CGCC--AAAAAAAAACAACCCGCCAC----AACAACACCAATTGCTGGTC-TGAACG---------AACCGAATGTGC-TGACTCAATCACAGGCAAACTATTGCTGGCGAGCACGGCCTTGATGGCGATGGCCAGTAAGT-CCTTTCGCTACCATACGA-TGTGGAATGGCGGTCTGATATTTGTTTTGCTAGATACAATGGCACCTCCGACCTCCAGCTGGAGCGGATGAACGTCTACTTCACCCACGTAAGTTGTGTTCCTGCTCAATGACAA-----CGAGCTGCACCTAACCGATGGATTTTTTGTTTTCTAGGCTAGCGGTGACAAGTACGTGCCCCGTGCCGTTCTGGTCGATCTGGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGCAAGCTCTTCCGTCCCGACAACTTCGTCT Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223 TGGTACGTGTT-----GACTCCGAAAGCTCTACCTTAACAAAGACACATGA-----------AGACCAGCCAATTGGTAAT--TTGCTG---------GAGATGACATGC-TGACTGATCTACAGGCAAAACATTGCTGCTGAGCACGGCCTTGATGGTGATGGCCAGTGAGT-TTGACAAACCATGTTGGA-GATGGAATGGCGGTCTGATGTC--TGTTACTAGGTACAACGGTGCCTCCGACCTTCAGCTGGAGCGCATGAATGTTTATTTCAATCACGTAAGTGGCACTGGTTATATATGGAAAG----TGAAACTTGTCTCATC-------AAAGTTGTCTGTAGGCCAGCGGTGACCGCTACGTTCCCCGTGCTGTGCTAGTCGACTTGGAGCCCGGTACCATGGACGCCATCCGTGCCGGTCCCTTTGGCAAGCTCTTCCGCCCCGACAACTTCGTCT Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222 TGGTACGTGTT-----GACTCCGAAAGCTCTACCTTAACAAAGACACATGA-----------AGACCAGCCAATTGGTAAT--TTGCTG---------GAGATGACATGC-TGACTGATCTACAGGCAAAACATTGCTGCTGAGCACGGCCTTGATGGTGATGGCCAGTGAGT-TTGACAAACCATGTTGGA-GATGGAATGGCGGTCTGATGTC--TGTTACTAGGTACAACGGTGCCTCCGACCTTCAGCTGGAGCGCATGAATGTTTATTTCAATCACGTAAGTGGCACTGGTTATATATGGAAAG----TGAAACTTGTCTCATC-------AAAGTTGTCTGTAGGCCAGCGGTGACCGCTACGTTCCCCGTGCTGTGCTAGTCGACTTGGAGCCCGGTACCATGGACGCCATCCGTGCCGGTCCCTTTGGCAAGCTCTTCCGCCCCGACAACTTCGTCT Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224 TGGTACGTGTT-----GACCCCGAAAGCTCTACCCCAACAAAGACACATGA-----------GAACCAGCCAATTAGTGAT--ATACTG---------GAGATGACATGC-TGACTGATGTACAGGCAAAACATTGCTGCTGAGCACGGCCTTGATGGTGACGGCCAGTGAGT-TTGACGAACCATGTTGGA-GATGGAATGGCGGTCTGATGTC--TTTTACTAGATACAATGGTGCCTCCGACCTTCAGCTGGAGCGCATGAATGTTTACTTCAATCATGTAAGTGACACTGGCAATATTTGGAAAG----TGAAATTTGTCTAATC-------AAGGTTATCTGTAGGCCAGCGGTGACCGCTACGTTCCCCGTGCTGTGCTAGTCGACCTGGAGCCCGGTACCATGGACGCCATCCGTGCCGGCCCCTTTGGCAAGCTCTTCCGCCCCGACAACTTCGTCT ; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = monophyl; Pset gapmode = missing; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; Savetrees format = nexus brlens = yes maxdecimals = 0 file = Charlesia_MP_BenA_parsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = Charlesia_MP_BenA_parsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = Charlesia_MP_BenA_heuristicBS.tre; Log stop = yes; END; begin mrbayes; log start; Lset nst = 6 rates = invgamma; Prset statefreqpr = fixed ( equal ); mcmcp nruns = 2 nchains = 4 stoprule = yes stopval = 0.01 ngen = 10000000 Filename = Charlesia_BI_BenA; mcmc; sump; sumt burninfrac = 0.25 conformat = simple; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Charlesia_BenA') = unord: 1 - 465; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Charlesia_BenA') = universal: 1 - 465; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Charlesia_BenA') = 'Jukes-Cantor': 1 - 465; END; BEGIN TREES; Title 'Charlesia_BI_BenA'; LINK Taxa = Taxa; TRANSLATE [0] 1 Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508, [1] 2 Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503, [2] 3 Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504, [3] 4 Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507, [4] 5 Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505, [5] 6 Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506, [6] 7 Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450, [7] 8 Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509, [8] 9 Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645, [9] 10 Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513, [10] 11 Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548, [11] 12 Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545, [12] 13 Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263, [13] 14 Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264, [14] 15 Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443, [15] 16 Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483, [16] 17 Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na, [17] 18 Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715, [18] 19 Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719, [19] 20 Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714, [20] 21 Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716, [21] 22 Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717, [22] 23 Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na, [23] 24 Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na, [24] 25 Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na, [25] 26 Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718, [26] 27 Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223, [27] 28 Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222, [28] 29 Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224; TREE Charlesia_BI_BenA1 = (1:0.004639533,2:0.00194634,3:0.001946371,((4:0.001988529,5:0.001926773,6:0.001854473)0.906:0.004647674,(((7:0.002205268,8:0.001813224,9:0.001753041,10:0.00182504,11:0.001961129)0.735:0.004751941,12:0.005393028)1.000:0.04134968,((13:0.001846519,14:0.001709197)1.000:0.1711472,(15:0.05993621,16:0.03599619)1.000:0.1553244,(17:0.2891513,((18:0.02395997,19:0.01662132,20:0.01914664,21:0.01116795,22:0.01598197,((23:0.001689977,25:0.00179264)0.964:0.004323926,24:0.001953046)1.000:0.01750797,26:0.05941931)1.000:0.3949758,((27:0.001876962,28:0.001829512)1.000:0.04716481,29:0.03515144)1.000:0.2474513)1.000:0.2559223)0.928:0.1241558)1.000:0.1178334)0.705:0.008631633)0.992:0.01288393); TREE Charlesia_BI_BenA2 = (1:0.004639533,2:0.00194634,3:0.001946371,((4:0.001988529,5:0.001926773,6:0.001854473):0.004647674,(((7:0.002205268,8:0.001813224,9:0.001753041,10:0.00182504,11:0.001961129):0.004751941,12:0.005393028):0.04134968,((13:0.001846519,14:0.001709197):0.1711472,(15:0.05993621,16:0.03599619):0.1553244,(17:0.2891513,((18:0.02395997,19:0.01662132,20:0.01914664,21:0.01116795,22:0.01598197,((23:0.001689977,25:0.00179264):0.004323926,24:0.001953046):0.01750797,26:0.05941931):0.3949758,((27:0.001876962,28:0.001829512):0.04716481,29:0.03515144):0.2474513):0.2559223):0.1241558):0.1178334):0.008631633):0.01288393); END; BEGIN TREES; Title 'Charlesia_MP_BenA'; LINK Taxa = Taxa; TRANSLATE [0] 1 Penicillium_charlesii_CBS304.48T_Charlesia_BenA_JX091508, [1] 2 Penicillium_charlesii_CV0646_Charlesia_BenA_JX091503, [2] 3 Penicillium_charlesii_CV0744_Charlesia_BenA_JX091504, [3] 4 Penicillium_charlesii_CV2006_Charlesia_BenA_JX091507, [4] 5 Penicillium_charlesii_CV1754_Charlesia_BenA_JX091505, [5] 6 Penicillium_charlesii_CV1819_Charlesia_BenA_JX091506, [6] 7 Penicillium_fellutanum_CBS229.81T_Charlesia_BenA_KJ834450, [7] 8 Penicillium_fellutanum_CV1936_Charlesia_BenA_JX091509, [8] 9 Penicillium_multicolor_CBS501.73T_Charlesia_BenA_JN799645, [9] 10 Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_BenA_JX091513, [10] 11 Penicillium_fellutanum_NRRL35622_Charlesia_BenA_EF198548, [11] 12 Penicillium_fellutanum_NRRL35619_Charlesia_BenA_EF198545, [12] 13 Penicillium_indicum_CBS115.63T_Charlesia_BenA_EU427263, [13] 14 Penicillium_indicum_gerundense_CBS179.81T_Charlesia_BenA_EU427264, [14] 15 Penicillium_coffeae_CBS119387T_Charlesia_BenA_KJ834443, [15] 16 Penicillium_phoeniceum_CBS249.32T_Charlesia_BenA_KJ834483, [16] 17 Penicillium_cf_coffeae_KAS2597T_Charlesia_BenA_na, [17] 18 Penicillium_boreae_CBS111717T_Stolkiae_BenA_JN617715, [18] 19 Penicillium_pullum_CBS331.48T_Stolkiae_BenA_JN617719, [19] 20 Penicillium_canariense_CBS111720T_Stolkiae_BenA_JN617714, [20] 21 Penicillium_subarcticum_CBS111719T_Stolkiae_BenA_JN617716, [21] 22 Penicillium_stolkiae_CBS315.67T_Stolkiae_BenA_JN617717, [22] 23 Penicillium_cf_canariense_KAS2475T_Stolkiae_BenA_na, [23] 24 Penicillium_cf_canariense_KAS2476_Stolkiae_BenA_na, [24] 25 Penicillium_cf_canariense_KAS2477B_Stolkiae_BenA_na, [25] 26 Penicillium_donkii_CBS188.72T_Stolkiae_BenA_JN617718, [26] 27 Penicillium_georgiense_CBS132826T_Charlesia_BenA_EF506223, [27] 28 Penicillium_georgiense_NRRL35507_Charlesia_BenA_EF506222, [28] 29 Penicillium_georgiense_NRRL35508_Charlesia_BenA_EF506224; TREE Charlesia_MP_BenA_PAUP_1 = (1:0.0,(2:0.0,3:0.0,((4:0.0,5:0.0,6:0.0):1,(((7:0.0,8:0.0,9:0.0,10:0.0,11:0.0):1,12:1):10,(((13:0.0,14:0.0):29,(17:41,((((18:8,((20:6,((23:0.0,25:0.0):1,24:0.0):6):1,(21:4,22:5):2):1):1,19:5):8,26:14):60,((27:0.0,28:0.0):15,29:12):39):44):40):20,(15:14,16:13):27):38):5):4):1); TREE Charlesia_MP_BenA_PAUP_2 = (1:0.0,(2:0.0,3:0.0,((4:0.0,5:0.0,6:0.0):1,(((7:0.0,8:0.0,9:0.0,10:0.0,11:0.0):1,12:1):10,(((13:0.0,14:0.0):29,(17:41,((((18:8,(20:7,(21:4,22:5):2,((23:0.0,25:0.0):1,24:0.0):6):1):1,19:5):8,26:14):60,((27:0.0,28:0.0):15,29:12):39):44):40):20,(15:14,16:13):27):38):5):4):1); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1450380630556; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7139054154581710262; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4249374605583367645; mqVersion 303; checksumv 0 3 1781824962 null getNumChars 465 numChars 465 getNumTaxa 29 numTaxa 29 short true bits 15 states 15 sumSquaresStatesOnly 261687.0 sumSquares 261687.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 241; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 62 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4249374605583367645 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 459 392; setLocation 62 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;