#NEXUS [written Thu Dec 17 14:29:15 EST 2015 by Mesquite version 3.03 (build 702) at ONOTTRA670030D/10.117.218.113] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=29; TAXLABELS Penicillium_charlesii_CBS304.48T_Charlesia_CaM_AY741727 Penicillium_fellutanum_CBS229.81T_Charlesia_CaM_AY741753 Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_CaM_AY741751 Penicillium_fellutanum_NRRL35622_Charlesia_CaM_EF198576 Penicillium_fellutanum_NRRL35619_Charlesia_CaM_EF198573 Penicillium_charlesii_CV0646_Charlesia_CaM_JX141530 Penicillium_charlesii_CV0744_Charlesia_CaM_JX141531 Penicillium_charlesii_CV2006_Charlesia_CaM_JX141534 Penicillium_charlesii_CV1754_Charlesia_CaM_JX141532 Penicillium_charlesii_CV1819_Charlesia_CaM_JX141533 Penicillium_fellutanum_CV1936_Charlesia_CaM_JX141535 Penicillium_multicolor_CBS501.73T_Charlesia_CaM_JN799646 Penicillium_indicum_CBS115.63T_Charlesia_CaM_AY741744 Penicillium_indicum_gerundense_CBS179.81T_Charlesia_CaM_EU427283 Penicillium_coffeae_CBS119387T_Charlesia_CaM_AY741747 Penicillium_phoeniceum_CBS249.32T_Charlesia_CaM_AY741729 Penicillium_georgiense_CBS132826T_Charlesia_CaM_EF506239 Penicillium_georgiense_NRRL35507_Charlesia_CaM_EF506238 Penicillium_georgiense_NRRL35508_Charlesia_CaM_EF506240 Penicillium_cf_coffeae_KAS2597T_Charlesia_CaM_na Penicillium_boreae_CBS111717T_Stolkiae_CaM_AF481138 Penicillium_pullum_CBS331.48T_Stolkiae_CaM_AF481134 Penicillium_stolkiae_CBS315.67T_Stolkiae_CaM_AF481135 Penicillium_canariense_CBS111720T_Stolkiae_CaM_AF481137 Penicillium_donkii_CBS188.72T_Stolkiae_CaM_AF481136 Penicillium_subarcticum_CBS111719T_Stolkiae_CaM_AF481141 Penicillium_cf_canariense_KAS2475T_Stolkiae_CaM_na Penicillium_cf_canariense_KAS2477B_Stolkiae_CaM_na Penicillium_cf_canariense_KAS2476_Stolkiae_CaM_na ; END; BEGIN CHARACTERS; TITLE 'Charlesia_CaM'; DIMENSIONS NCHAR=557; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Penicillium_charlesii_CBS304.48T_Charlesia_CaM_AY741727 CCTCTTCGTAAGTTGTCTGATCTTTGATTGCGGATTTTGTTTGGCCTA-GGGAAACGCAGCTAACCGCG-----------TTATTCTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGATGACACCAGACATTAAAGCCCTCCAGCAAT------TGGAGTCATCTTGACTGAGACG-AAATGATCATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGACAACAACGGCACCATTGATTTCCCCGGTATAAAATTGCTGCACCCCCTTC-----CCTCTCTGGCCCTTCTCGGTTGACCCGGACT-GTTACTGATCTTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGTCACG Penicillium_fellutanum_CBS229.81T_Charlesia_CaM_AY741753 CCTCTTCGTAAGTTGTCTGATC-TTGATTGCGAATTTTGTTTGGCCTA-GGGAAACGCAGCTAACCATG-----------TTATTTTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGACGACACCAGACATAAAAGTCCCCCAGCAAT------TGGAATCATTTTTACTGAGACG-AAATGGTGATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGATAACAACGGCACCATTGATTTCCCCGGTACAAAATTGCTGCACCACC--C-----CCTCTCCGGCCCTTCTCAGCTGACCCGGACT-GTTACTGAT-TTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGTCATG Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_CaM_AY741751 CCTCTTCGTAAGTTGTCTGATC-TTGATTGCGAATTTTGTTGGGCCTA-GGGAAACGCAGCTAACCATG-----------TTATTTTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGACGACACCAGACATAAAAGTCCCCCAGCAAT------TGGAATCATTTTTACTGAGACG-AAATGGTGATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGATAACAACGGCACCATTGATTTCCCCGGTACAAAATTGCTGCACCACC--C-----CCTCTCCGGCCCTTCTCAGCTGACCCGGACT-GTTACTGAT-TTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGTCATG Penicillium_fellutanum_NRRL35622_Charlesia_CaM_EF198576 CCTCTTCGTAAGTTGTCTGATC-TTGATTGCGAATTTTGTTTGGCCTA-GGGAAACGCAGCTAACCATG-----------TTATTTTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGACGACACCAGACATAAAAGTCCCCCAGCAAT------TGGAATCATTTTTACTGAGACG-AAATGGTGATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGATAACAACGGCACCATTGATTTCCCCGGTACAAAATTGCTGCACCACC--C-----CCTCTCCGGCCCTTCTCAGCTGACCCGGACT-GTTACTGAT-TTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGTCATG Penicillium_fellutanum_NRRL35619_Charlesia_CaM_EF198573 CCTCTTCGTAAGTTGTCTGATC-TTGATTGCGAATTTTGTTTGGCCTA-GGGAAACGCAGCTAACCATG-----------TTATTTTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGACGACACCAGACATAAAAGTCCCCCAGCAAT------TGGAATCATTTTTACTGAGACG-AAATGGTGATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGATAACAACGGCACCATTGATTTCCCCGGTACAAAATTGCTGCACCACC--C-----CCTCTCCGGCCCTTCTCAGCTGACCCGGACT-GTTACTGAT-TTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGTCATG Penicillium_charlesii_CV0646_Charlesia_CaM_JX141530 CCTCTTCGTAAGTTGTCTGATCTTTGATTGCGGATTTTGTTTGGCCTA-GGGAAACGCAGCTAACCGCG-----------TTATTCTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGATGACACCAGACATTAAAGCCCTCCAGCAAT------TGGAGTCATCTTGACTGAGACG-AAATGATCATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGACAACAACGGCACCATTGATTTCCCCGGTATAAAATTGCTGCACCCCCTTC-----CCTCTCTGGCCCTTCTCGGTTGACCCGGACT-GTTACTGATCTTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGCCACG Penicillium_charlesii_CV0744_Charlesia_CaM_JX141531 CCTCTTCGTAAGTTGTCTGATCTTTGATTGCGGATTTTGTTTGGCCTA-GGGAAACGCAGCTAACCGCG-----------TTATTCTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGATGACACCAGACATTAAAGCCCTCCAGCAAT------TGGAGTCATCTTGACTGAGACG-AAATGATCATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGACAACAACGGCACCATTGATTTCCCCGGTATAAAATTGCTGCACCCCCTTC-----CCTCTCTGGCCCTTCTCGGTTGACCCGGACT-GTTACTGATCTTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGCCACG Penicillium_charlesii_CV2006_Charlesia_CaM_JX141534 CCTCTTCGTAAGTTGTTTGATC-TTGATTGCGAATTTTGTTTGGCCCA-GGGAAACGCAGCTAACCACG-----------CTATTCTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGATGACACCAGACATTAAAGCCCTCCAGCAAT------TGGAGTCATTTTGACTGAGATG-AAATGATCATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCTCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGACAACAACGGCACCATTGATTTCCCCGGTATAAAATTGCTGCACCCCCTTC-----CCTCTCCGGCCCCTCTCGGTTGATCCGGACT-GTTACTGATCTTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGTGAGGCATTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCGCTGCTGAGCTGCGCCACG Penicillium_charlesii_CV1754_Charlesia_CaM_JX141532 CCTCTTCGTAAGTTGTTTGATC-TTGATTGCGAATTTTGTTTGGCCCA-GGGAAACGCAGCTAACCACG-----------CTATTCTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGATGACACCAGACATTAAAGCCCTCCAGCAAT------TGGAGTCATTTTGACTGAGATG-AAATGATCATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCTCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGACAACAACGGCACCATTGATTTCCCCGGTATAAAATTGCTGCACCCCCTTC-----CCTCTCCGGCCCCTCTCGGTTGATCCGGACT-GTTACTGATCTTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGTGAGGCATTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCGCTGCTGAGCTGCGCCACG Penicillium_charlesii_CV1819_Charlesia_CaM_JX141533 CCTCTTCGTAAGTTGTTTGATC-TTGATTGCGAATTTTGTTTGGCCCA-GGGAAACGCAGCTAACCACG-----------CTATTCTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGATGACACCAGACATTAAAGCCCTCCAGCAAT------TGGAGTCATTTTGACTGAGATG-AAATGATCATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCTCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGACAACAACGGCACCATTGATTTCCCCGGTATAAAATTGCTGCACCCCCTTC-----CCTCTCCGGCCCCTCTCGGTTGATCCGGACT-GTTACTGATCTTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGTGAGGCATTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCGCTGCTGAGCTGCGCCACG Penicillium_fellutanum_CV1936_Charlesia_CaM_JX141535 CCTCTTCGTAAGTTGTCTGATC-TTGATTGCGAATTTTGTTTGGCCTA-GGGAAACGCAGCTAACCATG-----------TTATTTTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGACGACACCAGACATAAAAGTCCCCCAGCAAT------TGGAATCATTTTTACTGAGACG-AAATGGTGATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGATAACAACGGCACCATTGATTTCCCCGGTACAAAATTGCTGCACCACC--C-----CCTCTCCGGCCCTTCTCAGCTGACCCGGACT-GTTACTGAT-TTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGCCACG Penicillium_multicolor_CBS501.73T_Charlesia_CaM_JN799646 CCTCTTCGTAAGTTGTCTGATC-TTGATTGCGAATTTTGTTTGGCCTAGGGGAAACGCAGCTAACCATG-----------TTATTTTCAACAGGACAAGGATGGCGATGGTGAGTGCC-----------------------------------CGACGACACCAGACATAAAAGTCCCCCAGCAAT------TGGAATCATTTTTACTGAGACG-AAATGGTGATTAGGACAAATCACCACCAAGGAGCTTGGCACTGTCATGCGCTCGCTTGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAAGTCGACGCCGATAACAACGGCACCATTGATTTCCCCGGTACAAAATTGCTGCACCACC--C-----CCTCTCCGGCCCTTCTCAGCTGACCCGGACT-GTTACTGAT-TTCGACTAGAATTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGCGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGCCACG Penicillium_indicum_CBS115.63T_Charlesia_CaM_AY741744 CCTCTTTGTAAGTGCTCCGATC-TTGATTGCGTGTCTTGCTTGACTTG-GAACGCTTTAGCTAACAAAT---------AATGCCCTGTAATAGGACAAGGATGGCGATGGTGAGTGCGATCTGCGCCC-------------------------GGGCGACACTAGGCACTCTTGGCCATGAGAAAT------TGAAGAAATTTTTACTGAGACG-GATCAATGAACAGGACAAATCACCACCAAGGAGCTCGGCACTGTCATGCGCTCTCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAATGAGGTTGACGCCGATAACAACGGCACTATCGATTTCCCCGGTACGAGACATCTGCGATTTT-----------CTATACCCTCACTAAATTCACTCAGACCTTTTACTGAC-GTCCAATAGAGTTCCTTACCATGATGGCTCGTAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGGGAGGCATTCAAGGTGTTCGACCGTGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGCCATG Penicillium_indicum_gerundense_CBS179.81T_Charlesia_CaM_EU427283 CCTCTTTGTAAGTGCTCCGATC-TTGATTGCGTGTCTTGCTTGACTTG-GAACGCTTTAGCTAACAAAT---------AATGCCCTGTAATAGGACAAGGATGGCGATGGTGAGTGCGATCTGCGCCC-------------------------GGGCGACACTAGGCACTCTTGGCCATGAGAAAT------TGAAGAAATTTTTACTGAGACG-GATCAATGAACAGGACAAATCACCACCAAGGAGCTCGGCACTGTCATGCGCTCTCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAATGAGGTTGACGCCGATAACAACGGCACTATCGATTTCCCCGGTACGAGACATCTGCGATTTT-----------CTATACCCTCACTAAATTCACTCAGACCTTTTACTGAC-GTCCAATAGAGTTCCTTACCATGATGGCTCGTAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGGGAGGCATTCAAGGTGTTCGACCGTGACAACAACGGTTTCATCTCCGCCGCTGAGCTGCGCCATG Penicillium_coffeae_CBS119387T_Charlesia_CaM_AY741747 CCTCTTTGTAAGTACAGCGAGG---------ATGATAAATCT----CG-GGAATACCCTGCTAACCTGA-----------ATTACCTGTACAGGACAAGGATGGCGATGGTAAGCCTAATCTCCGCC--------------------------CGACAACACTGGACACAACAAGCCTTT-GCAAT------TGGAATATCCCCGACTAAGACG-AATTGAATAATAGGCCAGATCACCACCAAGGAGCTTGGTACCGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATTGATTTCCCTGGTATGTGATTCCTGCGCTGTTCACCGGAACTCCATGCGACTTTTGTTCTTCGTCCGGACC-TGTGCTTACAACATAACAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGTGAGGCATTCAAGGTGTTCGACCGTGACAACAACGGCTTCATCTCCGCCGCCGAGCTGCGCCACG Penicillium_phoeniceum_CBS249.32T_Charlesia_CaM_AY741729 CCTTTTCGTAAGTACATCGATG---------ATGATATAGCTCCCGCG-AGGATTCCCTACTAACCAGA-----------AATACCTGCACAGGACAAGGATGGCGATGGTAAGCCTAATATCCGCC--------------------------CGACAACATTGGACAGATCAAGTCTCT-GCAAT------TGAGAGATCCCCGGCTAAGACG-AATTGAACAATAGGACAAATCACCACCAAGGAGCTTGGTACCGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCCGACAACAACGGCACCATCGATTTCCCTGGTATGTCATACCTGCGATTCCCATCGGAGCTACACGCGAGTTTCGTGCTTCGCTAGGACC-TGCGCTGACACCTCCACAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGATACCGACTCAGAGGAGGAGATTCGTGAGGCATTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCCGAGCTGCGCCACG Penicillium_georgiense_CBS132826T_Charlesia_CaM_EF506239 CCTCTTTGTAAGTGGTCCGATT------CGTGGGTTACGTGCTCGGTG-GAGGACAACCGTTAACAAGA--------TTGTCACAATCAACAGGACAAGGATGGCGATGGTGAGTGCGATCTTCTCGAGC-----------------------GGCTTATACCTGAGATGAGCTCTGTCCATCGATATTGTGCGAAAGACACTTGGCTAAGACA-TCTGATATCACAGGCCAAATCACCACCAAGGAGCTGGGAACTGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACAATAACGGCACCATTGACTTCCCTGGTATGACACCGCTTCTA-----------------------CGTCACACAAGATATGGATC-TCTTCTGAC-GTGCGACAGAGTTCCTCACCATGATGGCCCGTAAGATGAAGGATACCGACTCCGAGGAGGAGATTCGGGAGGCATTCAAGGTCTTCGACCGCGACAACAACGGCTTCATTTCCGCTGCTGAGCTGCGTCACG Penicillium_georgiense_NRRL35507_Charlesia_CaM_EF506238 CCTCTTTGTAAGTGGTCCGATT------CGTGGGTTACGTGCTCGGTG-GAGGACAACCGTTAACAAGA--------TTGTCACAATCAACAGGACAAGGATGGCGATGGTGAGTGCGATCTTCTCGAGC-----------------------GGCTTATACCTGAGATGAGCTCTGTCCATCGATATTGTGCGAAAGACACTTGGCTAAGACA-TCTGATATCACAGGCCAAATCACCACCAAGGAGCTGGGAACTGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACAATAACGGCACCATTGACTTCCCTGGTATGACACCGCTTCTA-----------------------CGTCACACAAGATATGGATC-TCTTCTGAC-GTGCGACAGAGTTCCTCACCATGATGGCCCGTAAGATGAAGGATACCGACTCCGAGGAGGAGATTCGGGAGGCATTCAAGGTCTTCGACCGCGACAACAACGGCTTCATTTCCGCTGCTGAGCTGCGTCACG Penicillium_georgiense_NRRL35508_Charlesia_CaM_EF506240 CCTCTTTGTAAGTGGTCCGATT------CGTGGGTTACGTGCTCGGTG-GAGGACAACCGTTAACAAGA--------TTGTCACAATCAACAGGACAAGGATGGCGATGGTGAGTGCGATCTTCTCGAGC-----------------------GGCTTATACCTGAGATGAGCTCTGTCCATCGATATTGTGCGAAAGACACTTGGCTAAGACA-TCTGATATCACAGGCCAAATCACCACCAAGGAGCTGGGAACTGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCTGAGCTGCAGGACATGATCAACGAGGTTGATGCCGACAATAACGGCACCATTGACTTCCCTGGTATGACACCGCTTCTA-----------------------CGT--CACAAGATATGGATC-TCTTCTGAC-GTGCGACAGAGTTCCTCACCATGATGGCCCGTAAGATGAAGGATACCGACTCCGAGGAGGAGATTCGGGAGGCATTCAAGGTCTTCGACCGCGACAACAACGGCTTCATTTCCGCTGCTGAGCTGCGTCACG Penicillium_cf_coffeae_KAS2597T_Charlesia_CaM_na CCTCTTTGTAAGTGACACCAAT-CTGCACCTGACAAGCCGTCTGCGTG-GAGCCACGAGACTAACCTAG--------TATTTCCCGATTGCAGGACAAGGATGGCGATGGTGAGTGTGATGCCTGC---------------------------GAACAACCCTAGATATGACGGAATTATGTCCC-------TTGTAGCTGGGTTACTAAGACA-ATTCGATCTATAGGCCAAATCACCACCAAGGAGCTGGGCACCGTCATGCGCTCCCTCGGCCAGAACCCCTCCGAGTCCGAGCTTCAGGACATGATCAACGAGGTTGATGCTGATAACAACGGCACCATTGATTTCCCCGGTACGAACTGTCCCCGCATCATAC--------CTACCATTCCTCTCGATCGGCCGA-----TATACTGAT-CTCCAGCAGAGTTCTTGACCATGATGGCCCGTAAGATGAAGGACACCGATTCCGAGGAGGAGATCCGCGAGGCATTCAAGGTCTTCGACCGCGACAACAACGGCTTCATCTCCGCCGCTGAGCTGCGCCACG Penicillium_boreae_CBS111717T_Stolkiae_CaM_AF481138 CCTGTTTGTGAGTACCCGATGAGATATGGATCGAGGATCTCCGGTCGG-ATAACAGTTTACTGACCGGC---CGTTTTTTCGCTTGTGTTTAGGACAAGGATGGCGATGGTGAGTGCGATCTTTCCGGATAGCTCGGGCGTTCCGCCCGAGGATGCTGTCACTGGCGATGGGAAGCACTGGGGAAA-TTT--TCAAAACAGCATAACTGAGACGCGTGCGATTCCTAGGCCAGATCACCACCAAGGAGCTCGGTACAGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTCGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAATCTCCAACGCTTTGCC--------------TGATCGCGAGCCCAGACTGATC-GTTCCCGTG-CGCTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGGGAGGCCTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCTGCCGAGCTGCGCCACG Penicillium_pullum_CBS331.48T_Stolkiae_CaM_AF481134 CCTGTTTGTGAGTACCCGATGAGATATGGATCAAGGATCTCCGGTCGG-ATAACAGTTTACTGACCGGC---CGTTTTTTCGCTTGTGTTTAGGACAAGGATGGCGATGGTGAGTGCGATCTTTCCGGATAGCTCGGGCGTTCCGCCCGAGGATGCTGTCACTGGCGATTGGAAGCACTGGGGAAA-TTT--TCAAAACAGCATAACTGAGACGCGTGCGATTCCTAGGCCAGATCACCACCAAGGAGCTCGGTACAGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTCGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAATCTCCAACGCTTTGCC--------------TGATCGCGAGCCCAGACTGATC-GTTCCCGTG-CGCTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGGGAGGCCTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCCGCCGAGCTGCGCCACG Penicillium_stolkiae_CBS315.67T_Stolkiae_CaM_AF481135 CCTGTTTGTGAGTACCCGATGAGATGTGGATCGAGGATCTCCGGTCGG-ATAACAGTTTACTGACCGGC---CGTTTTTTCGCTTGTGCTTAGGACAAGGATGGCGATGGTGAGTACGATCTTTCCGGATAGCTCGGGCGTTCCGCCCGAGGATACTGTCACTGGCGACTGGAAGCACTGG--------T--TCAAAACAGCATAACTGAGACGCGTACGATTCCTAGGCCAGATCACCACCAAGGAGCTAGGTACAGTGATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTTGATGCCGACAACAACGGCACCATTGACTTTCCCGGTACGCAATATCCAACGCTGTGCT--------------TGATCGCGAGCCCAGACTGATC-GTTCCCGTG-CGCTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGGGAAGCCTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCTGCCGAGTTGCGCCATG Penicillium_canariense_CBS111720T_Stolkiae_CaM_AF481137 CCTGTTTGTGAGTACCCGATGAGACGTGGATCCAGGATCTCCGGTCGG-ATAACAGTTTACTGACCGGCCCGCTTTTTTTCACTTGTGTTTAGGACAAGGATGGCGATGGTGAGTGCAATCTTCCCGGATAGCTCGGGCGTTCCGCCCAAGGATGCTGTCACTGGCGATTGGAAGTACCGGGAAAT-TTT--TCAAACCAGCATAACTGAGACGCGTACGATTCCTAGGCCAGATCACCACCAAGGAGCTAGGTACAGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTTGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAATATCCAACGTTCCACC--------------TGATTACGAGCCAAGACTGATC-GTTCCCGTG-CGCTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGGGAGGCCTTCAAGGTGTTCGATCGCGACAACAACGGTTTCATCTCCGCTGCCGAGCTGCGCCACG Penicillium_donkii_CBS188.72T_Stolkiae_CaM_AF481136 CCTGTTTGTGAGTACCCAACGACGCGTGGATTGAGGATCTCCGATCGG-AAAACAGGTTACTGACCGGCCC-GTTTTTTTCGCTTGTGATCAGGACAAGGATGGCGATGGTGAGTGCGATCTTACTGGATTGCTCGGGCGTTCTGCCCGAGGATGCTGTCACTGGCGATTAGAAGCACTGGGAAAT-TTT--TCAAAACAGCATAACTGAGACGCGTACGATTACTAGGCCAGATCACCACCAAGGAGCTGGGTACTGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTCGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAACATCCAACGCTTTGCC--------------TGATCGCGAGCCCAGACTAATC-GTTCCCATG-CACTCGCAGAGTTCCTTACTATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATTCGGGAGGCCTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCTGCCGAGCTGCGCCACG Penicillium_subarcticum_CBS111719T_Stolkiae_CaM_AF481141 -----------------------------------------------------------------------------------------------CAAGGATGGTGATGGTGAGTGCGATCTTTCCGGATAGCTCGGGCGTTCCGCCCGAGGATGCTCTCACTGGCGATTGGAAGCACTGGGGAAA--TT--TCAAAACAGCATAACTGAGACGCGTACGATTCCTAGGCCAGATCACCACCAAGGAGCTAGGTACCGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTTGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAATATCATACGCTGTGCC--------------TGATCGCGAGCCCAGACTGATC-GTTCCCGTC-CGCTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGGGAGGCCTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCTGCCGAGCTGCGCCATG Penicillium_cf_canariense_KAS2475T_Stolkiae_CaM_na CCTGTTTGTGAGTACCCGATGAGATGTGGATCGAGGATCTCCGGTCGG-ATAACAGTTTACTGACCGGC---CGTTTTTTCGCTTGTGCTTAGGACAAGGATGGCGATGGTGAGTGCGATATTTCCGGATAGCTCGGGCGTTCCGCCCGAGGATGCTGTCACTGGCAATTGGAAGCACTGGGGAAATTTT--TCAAAACAGCATAACTGAGACGCGTACGATTCCTAGGCCAGATCACCACCAAGGAGCTAGGTACAGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTTGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAATATCCACCGCTTTGCC--------------TGATCGCGAGCCCAGACTGAAC-GTTCCCGTG-C-CTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGGGAGGCCTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCTGCCGAGCTGCGCCATG Penicillium_cf_canariense_KAS2477B_Stolkiae_CaM_na CCTGTTTGTGAGTACCCGATGAGATGTGGATCGAGGATCTCCGGTCGG-ATAACAGTTTACTGACCGGC---CGTTTTTTCGCTTGTGCTTAGGACAAGGATGGCGATGGTGAGTGCGATATTTCCGGATAGCTCGGGCGTTCCGCCCGAGGATGCTGTCACTGGCAATTGGAAGCACTGGGGAAATTTT--TCAAAACAGCATAACTGAGACGCGTACGATTCCTAGGCCAGATCACCACCAAGGAGCTAGGTACAGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTTGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAATATCCACCGCTTTGCC--------------TGATCGCGAGCCCAGACTGAAC-GTTCCCGTG-C-CTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGAGGAGATCCGGGAGGCCTTCAAGGTGTTCGACCGCGACAACAACGGTTTCATCTCCGCTGCCGAGCTGCGCCATG Penicillium_cf_canariense_KAS2476_Stolkiae_CaM_na CCTGTTTGTGAGTACCCGATGAGATGTGGATCGAGGATCTCCGGTCGG-ATAACAGTTTACTGACCGGC---CGTTTTTTCGCTTGTGCTTAGGACAAGGATGGCGATGGTGAGTGCGATATTTCCGGATAGCTCGGGCGTTCCGCCCGAGGATGCTGTCACTGGCAATTGGAAGCACTGGGGAAATTTT--TCAAAACAGCATAACTGAGACGCGTACGATTCCTAGGCCAGATCACCACCAAGGAGCTAGGTACAGTCATGCGCTCGCTCGGCCAGAACCCCTCCGAGTCGGAGCTGCAGGATATGATCAACGAGGTTGATGCCGACAACAACGGCACCATTGACTTCCCCGGTACGCAATATCCACCGCTTTGCC--------------TGATCGCGAGCCCAGACTGAAC-GTTCCCGTG-C-CTCGCAGAGTTCCTTACCATGATGGCCCGCAAGATGAAGGACACCGACTCCGAGGA-------------------------------------------------------------------------- ; END; BEGIN PAUP; LOG start = yes append = yes; set autoclose = yes warnreset = no torder = right; SET CRITERION = parsimony maxtrees = 1000 increase = no storebrlens = yes outroot = monophyl; Pset gapmode = missing; HSEARCH ADDSEQ = random NREPS = 100 SWAP = TBR; Savetrees format = nexus brlens = yes maxdecimals = 0 file = Charlesia_MP_CaM_parsimony.trees; PSCORES 1 / TL = yes CI = yes RI = yes RC = yes HI = yes; Contree ALL / strict = yes treefile = Charlesia_MP_CaM_parsimonycons.tre; Bootstrap nreps = 1000 search = heuristic; Savetrees from = 1 to = 1 format = nexus brlens = yes savebootp = nodelabels maxdecimals = 0 file = Charlesia_MP_CaM_heuristicBS.tre; Log stop = yes; END; begin mrbayes; log start filename = Log_Charlesia_CaM.out; Lset nst = 6 rates = invgamma; Prset Prset statefreqpr = dirichlet ( 1 , 1 , 1 , 1 ); mcmcp nruns = 2 nchains = 4 stoprule = yes stopval = 0.01 ngen = 10000000 Filename = Charlesia_BI_CaM; mcmc; sump; sumt burninfrac = 0.25 conformat = simple; log stop; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Charlesia_CaM') = unord: 1 - 557; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Charlesia_CaM') = universal: 1 - 557; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Charlesia_CaM') = 'Jukes-Cantor': 1 - 557; END; BEGIN TREES; Title 'Charlesia_MP_CaM'; LINK Taxa = Taxa; TRANSLATE [0] 1 Penicillium_charlesii_CBS304.48T_Charlesia_CaM_AY741727, [1] 2 Penicillium_fellutanum_CBS229.81T_Charlesia_CaM_AY741753, [2] 3 Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_CaM_AY741751, [3] 4 Penicillium_fellutanum_NRRL35622_Charlesia_CaM_EF198576, [4] 5 Penicillium_fellutanum_NRRL35619_Charlesia_CaM_EF198573, [5] 6 Penicillium_charlesii_CV0646_Charlesia_CaM_JX141530, [6] 7 Penicillium_charlesii_CV0744_Charlesia_CaM_JX141531, [7] 8 Penicillium_charlesii_CV2006_Charlesia_CaM_JX141534, [8] 9 Penicillium_charlesii_CV1754_Charlesia_CaM_JX141532, [9] 10 Penicillium_charlesii_CV1819_Charlesia_CaM_JX141533, [10] 11 Penicillium_fellutanum_CV1936_Charlesia_CaM_JX141535, [11] 12 Penicillium_multicolor_CBS501.73T_Charlesia_CaM_JN799646, [12] 13 Penicillium_indicum_CBS115.63T_Charlesia_CaM_AY741744, [13] 14 Penicillium_indicum_gerundense_CBS179.81T_Charlesia_CaM_EU427283, [14] 15 Penicillium_coffeae_CBS119387T_Charlesia_CaM_AY741747, [15] 16 Penicillium_phoeniceum_CBS249.32T_Charlesia_CaM_AY741729, [16] 17 Penicillium_georgiense_CBS132826T_Charlesia_CaM_EF506239, [17] 18 Penicillium_georgiense_NRRL35507_Charlesia_CaM_EF506238, [18] 19 Penicillium_georgiense_NRRL35508_Charlesia_CaM_EF506240, [19] 20 Penicillium_cf_coffeae_KAS2597T_Charlesia_CaM_na, [20] 21 Penicillium_boreae_CBS111717T_Stolkiae_CaM_AF481138, [21] 22 Penicillium_pullum_CBS331.48T_Stolkiae_CaM_AF481134, [22] 23 Penicillium_stolkiae_CBS315.67T_Stolkiae_CaM_AF481135, [23] 24 Penicillium_canariense_CBS111720T_Stolkiae_CaM_AF481137, [24] 25 Penicillium_donkii_CBS188.72T_Stolkiae_CaM_AF481136, [25] 26 Penicillium_subarcticum_CBS111719T_Stolkiae_CaM_AF481141, [26] 27 Penicillium_cf_canariense_KAS2475T_Stolkiae_CaM_na, [27] 28 Penicillium_cf_canariense_KAS2477B_Stolkiae_CaM_na, [28] 29 Penicillium_cf_canariense_KAS2476_Stolkiae_CaM_na; TREE Charlesia_MP_CaM_PAUP_1 = (1:0.0,(((((2:0.0,3:1,4:0.0,5:0.0):2,11:0.0,12:0.0):8,((13:0.0,14:0.0):44,(((15:22,16:30):42,((17:0.0,18:0.0,19:0.0):66,((((21:1,22:2):5,((23:8,26:6):1,(27:0.0,28:0.0,29:0.0):4):2):5,24:15):14,25:12):78):36):35,20:63):43):56):14,(8:0.0,9:0.0,10:0.0):7):7,6:0.0,7:0.0):1); TREE Charlesia_MP_CaM_PAUP_2 = (1:0.0,(((((2:0.0,3:1,4:0.0,5:0.0):2,11:0.0,12:0.0):6,((13:0.0,14:0.0):46,(((15:23,16:29):53,20:66):25,((17:0.0,18:0.0,19:0.0):70,((((21:1,22:2):5,((23:8,26:6):1,(27:0.0,28:0.0,29:0.0):4):2):5,24:15):13,25:13):74):32):41):58):14,(8:0.0,9:0.0,10:0.0):9):5,6:0.0,7:0.0):1); TREE Charlesia_MP_CaM_PAUP_3 = (1:0.0,(((((2:0.0,3:1,4:0.0,5:0.0):2,11:0.0,12:0.0):8,((13:0.0,14:0.0):44,(((15:22,16:30):42,(((17:0.0,18:0.0):0.0,19:0.0):66,((((21:1,22:2):5,((23:8,26:6):1,(27:0.0,28:0.0,29:0.0):4):2):5,24:15):14,25:12):78):36):35,20:63):43):56):14,(8:0.0,9:0.0,10:0.0):7):7,6:0.0,7:0.0):1); TREE Charlesia_MP_CaM_PAUP_4 = (1:0.0,(((((2:0.0,3:1,4:0.0,5:0.0):2,11:0.0,12:0.0):6,((13:0.0,14:0.0):46,(((15:23,16:29):53,20:66):25,(((17:0.0,18:0.0):0.0,19:0.0):70,((((21:1,22:2):5,((23:8,26:6):1,(27:0.0,28:0.0,29:0.0):4):2):5,24:15):13,25:13):74):32):41):58):14,(8:0.0,9:0.0,10:0.0):9):5,6:0.0,7:0.0):1); END; BEGIN TREES; Title 'Charlesia_BI_CaM'; LINK Taxa = Taxa; TRANSLATE [0] 1 Penicillium_charlesii_CBS304.48T_Charlesia_CaM_AY741727, [1] 2 Penicillium_fellutanum_CBS229.81T_Charlesia_CaM_AY741753, [2] 3 Penicillium_fellutanum_ebenbitarianum_CBS415.69T_Charlesia_CaM_AY741751, [3] 4 Penicillium_fellutanum_NRRL35622_Charlesia_CaM_EF198576, [4] 5 Penicillium_fellutanum_NRRL35619_Charlesia_CaM_EF198573, [5] 6 Penicillium_charlesii_CV0646_Charlesia_CaM_JX141530, [6] 7 Penicillium_charlesii_CV0744_Charlesia_CaM_JX141531, [7] 8 Penicillium_charlesii_CV2006_Charlesia_CaM_JX141534, [8] 9 Penicillium_charlesii_CV1754_Charlesia_CaM_JX141532, [9] 10 Penicillium_charlesii_CV1819_Charlesia_CaM_JX141533, [10] 11 Penicillium_fellutanum_CV1936_Charlesia_CaM_JX141535, [11] 12 Penicillium_multicolor_CBS501.73T_Charlesia_CaM_JN799646, [12] 13 Penicillium_indicum_CBS115.63T_Charlesia_CaM_AY741744, [13] 14 Penicillium_indicum_gerundense_CBS179.81T_Charlesia_CaM_EU427283, [14] 15 Penicillium_coffeae_CBS119387T_Charlesia_CaM_AY741747, [15] 16 Penicillium_phoeniceum_CBS249.32T_Charlesia_CaM_AY741729, [16] 17 Penicillium_georgiense_CBS132826T_Charlesia_CaM_EF506239, [17] 18 Penicillium_georgiense_NRRL35507_Charlesia_CaM_EF506238, [18] 19 Penicillium_georgiense_NRRL35508_Charlesia_CaM_EF506240, [19] 20 Penicillium_cf_coffeae_KAS2597T_Charlesia_CaM_na, [20] 21 Penicillium_boreae_CBS111717T_Stolkiae_CaM_AF481138, [21] 22 Penicillium_pullum_CBS331.48T_Stolkiae_CaM_AF481134, [22] 23 Penicillium_stolkiae_CBS315.67T_Stolkiae_CaM_AF481135, [23] 24 Penicillium_canariense_CBS111720T_Stolkiae_CaM_AF481137, [24] 25 Penicillium_donkii_CBS188.72T_Stolkiae_CaM_AF481136, [25] 26 Penicillium_subarcticum_CBS111719T_Stolkiae_CaM_AF481141, [26] 27 Penicillium_cf_canariense_KAS2475T_Stolkiae_CaM_na, [27] 28 Penicillium_cf_canariense_KAS2477B_Stolkiae_CaM_na, [28] 29 Penicillium_cf_canariense_KAS2476_Stolkiae_CaM_na; TREE Charlesia_BI_CaM1 = (1:0.003085373,6:0.001318029,7:0.0013289,((((2:0.001279763,3:0.003320086,4:0.001389731,5:0.001314225)0.984:0.005202055,11:0.001367522,12:0.001374989)0.933:0.01983464,((13:0.00133299,14:0.001321424)1.000:0.1622885,(15:0.04615092,16:0.08247887)1.000:0.1873129,(17:0.001504421,18:0.00129831,19:0.001367221)1.000:0.2888206,20:0.3013726,((((21:0.003205728,22:0.005152032)0.998:0.01075209,((23:0.01723685,26:0.01762369)0.795:0.002959522,(27:0.001224556,28:0.001299022,29:0.001327243)0.993:0.008830228)0.894:0.00485107)0.953:0.008964015,24:0.03182286)0.860:0.03467385,25:0.02348634)1.000:0.4435161)0.999:0.1299674)0.874:0.02031897,(8:0.001281856,9:0.001393316,10:0.001325688)0.999:0.02016759)0.964:0.008505502); TREE Charlesia_BI_CaM2 = (1:0.003085373,6:0.001318029,7:0.0013289,((((2:0.001279763,3:0.003320086,4:0.001389731,5:0.001314225):0.005202055,11:0.001367522,12:0.001374989):0.01983464,((13:0.00133299,14:0.001321424):0.1622885,(15:0.04615092,16:0.08247887):0.1873129,(17:0.001504421,18:0.00129831,19:0.001367221):0.2888206,20:0.3013726,((((21:0.003205728,22:0.005152032):0.01075209,((23:0.01723685,26:0.01762369):0.002959522,(27:0.001224556,28:0.001299022,29:0.001327243):0.008830228):0.00485107):0.008964015,24:0.03182286):0.03467385,25:0.02348634):0.4435161):0.1299674):0.02031897,(8:0.001281856,9:0.001393316,10:0.001325688):0.02016759):0.008505502); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1450380555881; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6348465635141496520; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7391739428343166322; mqVersion 303; checksumv 0 3 2629351117 null getNumChars 557 numChars 557 getNumTaxa 29 numTaxa 29 short true bits 15 states 15 sumSquaresStatesOnly 286617.0 sumSquares 286617.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 241; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 371 267; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7391739428343166322 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 459 392; setLocation 371 267; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;