#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=10;
	TAXLABELS
		Syntrichia_ruralis Huperzia_lucidula Chara_vulgaris Cuscuta_obtusiflora Blossfeldia_liliputana Oryza_sativa Zea_mays Bryopsis_hypnoides Lyngbya_sp._PCC_8106 Chamaesiphon_minutus 
	;
END;

BEGIN CHARACTERS;
	TITLE  chloroplast_stromal_ridge_complex_from_rice;
	DIMENSIONS  NCHAR=81;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Syntrichia_ruralis      MAHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKANQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLSY
	Huperzia_lucidula       MAHSVRIYDTCIGCTQCVRACPTDVLEMIPWDGCKANQIASAPRTEDCVGCKRCESACPTDFLSIRVYLGSETTRSMGLAY
	Chara_vulgaris          MSHKIKIYDTCIGCTQCVRACPTDVLEMIPWQGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGSETTRSMGLAY
	Cuscuta_obtusiflora     MSHSVKVYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGAETTRSMGLAY
	Blossfeldia_liliputana  MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKARQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMGIAY
	Oryza_sativa            MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVYLGPETTRSMALSY
	Zea_mays                MSHSVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRIYLGPETTRSMALSY
	Bryopsis_hypnoides      MSHNVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAKQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGAETTRSMGLAY
	Lyngbya_sp._PCC_8106    MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKASQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGPETTRSMGLAY
	Chamaesiphon_minutus    MSHSVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAQQIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY
;
END;


BEGIN TREES;
	Title chloroplast_stromal_ridge_complex_from_rice;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Syntrichia_ruralis,
[1] 		2 Huperzia_lucidula,
[2] 		3 Chara_vulgaris,
[3] 		4 Cuscuta_obtusiflora,
[4] 		5 Blossfeldia_liliputana,
[5] 		6 Oryza_sativa,
[6] 		7 Zea_mays,
[7] 		8 Bryopsis_hypnoides,
[8] 		9 Lyngbya_sp._PCC_8106,
[9] 		10 Chamaesiphon_minutus;
	TREE Imported_tree_1 = ((((6:0.0,7:0.01289943)0.9370:0.02628726,5:0.02468125)0.4060:0.00530753,(3:0.04560386,4:0.01811196)0.2180:0.00135895)0.2650:0.00710054,(1:0.02685983,2:0.03685598)0.3910:0.00954667,(8:0.01954783,(9:0.02561807,10:0.01212225)0.8840:0.02538439)0.5410:0.01553617);
END;