#NEXUS
[written Thu Jan 07 14:21:08 BRST 2016 by Mesquite  version 3.04 (build 725) at MBF.local/172.30.33.56]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=7;
	TAXLABELS
		Adoxophyes_honmai_entomopoxvirus Amsacta_moorei_entomopoxvirus Diatraea_saccharalis_granulovirus Invertebrate_iridovirus_25 Wiseana_iridescent_virus Mythimna_separata_entomopoxvirus Choristoneura_rosaceana_entomopoxvirus 
	;

END;


BEGIN CHARACTERS;
	TITLE  'Matrix in file "disa039.nex"';
	DIMENSIONS  NCHAR=151;
	FORMAT DATATYPE = Protein GAP = - MISSING = ?;
	MATRIX
	Adoxophyes_honmai_entomopoxvirus        --LSDLSISIDILYEIFESVLEQSLIRNIIFEGLLNLVADQEMKLEDELLVYIGYCNICDPDAEIFTINMEDFEKSLDYADAIILNSKHIDCNYE--------------------------------YSITDLFCDKCGRALFDIDPYEIY
	Amsacta_moorei_entomopoxvirus           --LSELKISIKTIYDIFESMFGKTIIKKIIFEGLLKNVLNETIDPKDELLMYTGYCKDCDSDAEIFNLDMNDYENSLSYANNLVMNFKY---KNS--------------------------------YTYLDLFCDKCGKTLYDKDPYEIY
	Diatraea_saccharalis_granulovirus       MDLSEIAIKIENMYEENETV---ENVKKFVFNKLLKNVLDESVNLEDYLLVYSGYCKVCDSNAEIFKVDIDDYENTLDYAHAIYSLYKK---EKT--------------------------------LTYKDIFCKICARPLYEIDLFEIY
	Invertebrate_iridovirus_25              ---SELSIAIESIYEC--KTMDKNIVKS-VINDLLKNILNDEVDLKNELLMYTGYCDVCDSEVELFKIDIEDYDNTLDYANAICQASKC---KQPLTLSVPWDRKVILSRSQLTKGALPPGTLGLKGLTYKDILCRICARPLYCIDPFEIY
	Wiseana_iridescent_virus                ---SELSVAIESIYEN--KTMDKNIVKS-VIHHLLKNILNDEIDLKNELLMYTGYCDMCDSEVKLFKIEIEDYDNTLDYANAMCKASKH---KQP--------------------------------LTYKDILCKICARPLYCIDPYEIY
	Mythimna_separata_entomopoxvirus        ----------------------------------LDNLPSKEINLLDENCMYIGLCENCDEDSDLFNLEINEENNTQLYLEQILLNRKY---KYP--------------------------------ILYSDLFCKNCCSELF--------
	Choristoneura_rosaceana_entomopoxvirus  IDLSNIMIAKEYIIDNYKYLLSTNTIKDIIIIGLLSKIYNVEIDLRDQLLAYHGICVNCDHEYE----------------------SKN---DNK--------------------------------ILISDLFCKDCGEELFDVDPLEI-

;


END;

BEGIN TREES;
	Title 'Trees from "disa039.nex"';
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Adoxophyes_honmai_entomopoxvirus,
[1] 		2 Amsacta_moorei_entomopoxvirus,
[2] 		3 Diatraea_saccharalis_granulovirus,
[3] 		4 Invertebrate_iridovirus_25,
[4] 		5 Wiseana_iridescent_virus,
[5] 		6 Mythimna_separata_entomopoxvirus,
[6] 		7 Choristoneura_rosaceana_entomopoxvirus;
	TREE ML_tree = (6:0.693537,7:0.71369,((3:0.479327,(4:0.041102,5:0.09801):0.224107):0.277254,(1:0.475981,2:0.29959):0.116402):0.401685);

END;


BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED  (CHARACTERS = 'Matrix in file "disa039.nex"')  =  unord:  1 -  151;

END;

BEGIN CODONS;
	CODESET * UNTITLED  (CHARACTERS = 'Matrix in file "disa039.nex"')  =  universal:  1 -  151;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED  (CHARACTERS = 'Matrix in file "disa039.nex"')  =  'Mk1 (est.)':  1 -  151;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1452183668623;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 3661157927116661878;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 4259026496317478911;
			mqVersion 304;
			checksumv 0 3 2977830617 null  getNumChars 151 numChars 151 getNumTaxa 7 numTaxa 7   short false   bits 1048575   states 1048575   sumSquaresStatesOnly 1.6638256228141E13 sumSquares 1.6638256228141E13 longCompressibleToShort false usingShortMatrix false   NumFiles 1 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 22;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #4259026496317478911 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 392;
					setLocation 8 22;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;