NEXUS
[File created by TreeBASE:  1/16/09  15:29:56]
[Matrix accession#: M3397]

BEGIN TAXA;
	TITLE M3397;
	DIMENSIONS  NTAX=6;
	TAXLABELS
		Mucor_racemosus	Mucor_hiemalis	Poitrasia_circinans	Gilbertella_persicaria	Choanephora_cucurbitarum	Blakeslea_trispora
	;
END;

BEGIN CHARACTERS;
	TITLE M3397;
	DIMENSIONS NCHAR=374;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Mucor_racemosus                TAACAATGATTTCCCTAGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGCTTAGCTAAACCGGATTGTAAACTGTAGAAACATTTTCCAGATACACTAGACAAAAAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTCTTTGGTCTAAGTAGTTGTCTATTGTGATATGTTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAC-AGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAG
		Mucor_hiemalis                 TAACAATGATTTCCCTAGTAACGGCGAGTGAAGAGGAAAGAGCTCAAAGTTGGAACCTATTTGGCTTAGCTAAATCGGATTGTAAACTGTAGAAGTGTTTTCCAGACACGCCTGGTAAAAAAGTCCTTTGGAACAGGGCATCATAGAGGGTGAGAATCCCGTCATTGGCCAGAGCTGTTGTCTTTTGTGATACATTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTTGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAC-AGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAG
		Poitrasia_circinans            TAACAATGATTTCCCTAGTAACGGCGAGTGAACAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGTTTAGCCAAACCGGATTGTAAACTGGAGAAGTGTTTTCCTGGCACGCCTAACGAAAAAGTCCATTGGAACATGGTGACATAGAGGGTGAGAGCCCCGTATTTTGTTAGAGCTGTTGTCTTTTGTGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCAAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAC-AGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAG
		Gilbertella_persicaria         TAACAATGATTTCCCTAGTAACGGCGAGTGAACAGGAAAGAGCTCAAAGTTGGAACCCGTTTGGTTTAGCCAAACCGGATTGTAAACTGTAGAAGTGTTTTCCTGACACGCCTGATGAAAAAGTCCATTGGAACATGGTGACATAGAGGGTGAGAGCCCCGTATTTCGTCAGAGCTGTTGTCTTTTGTGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCAAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGACAAGACCTTTGAAAAGAGAGTTAAACCAGTATGTGAAATTGTTAAAAGGGAACCGGTTGGAGCCAG
		Choanephora_cucurbitarum       TAACAATGATTTCCCTAGTAACGGCGAGTGAACAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGTTTAGCCAAACCGGATTGTAAACTGTAGAAGTGTTTTCCTGGCACGCCTGACGAAAAAGTCCATTGGAACATGGTGACATAGAGGGTGAGAGCCCCGTATTTTGTCAGAGCTGTTGTCTCTTGTGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTGCCAAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAC-AGTATGTGAAATTGTTAAAAGGGAACCGGTTGGAGCCAG
		Blakeslea_trispora             TAACAATGATTTCCCTAGTAACGGCGAGTGAACAGGAAAGAGCTCAAAGTTGGAACCTGTTTGGTTTAGCCAAACCGGATTGTAAACTGTAGAAGTGTTTTCCTGGCACGCCTAACGAAAAAGTCCATTGGAACATGGTGACATAGAGGGTGAGAGCCCCGTATTTTGTTAGAGCTGTTGTCTTTTGTGATACACTTTCAAAGAGTCAGGTTGTTTGGGAATGCAGCCTAAATTGGGTGGTAAATCTCACCTAAAGCTAAATATTGGCAAAAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAAC-AGTATGTGAAATTGTTAAAAGGGAACCGTTTGGAGCCAG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 374 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;