NEXUS
[File created by TreeBASE:  1/16/09  15:29:56]
[Matrix accession#: M3399]

BEGIN TAXA;
	TITLE M3399;
	DIMENSIONS  NTAX=6;
	TAXLABELS
		Mucor_racemosus	Mucor_hiemalis	Poitrasia_circinans	Gilbertella_persicaria	Choanephora_infundibulifera	Blakeslea_trispora
	;
END;

BEGIN CHARACTERS;
	TITLE M3399;
	DIMENSIONS NCHAR=232;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Mucor_racemosus                   AAATAATCAATAA-TCTTGG--------CTTGTCCATTATTA----TCTATTT-ACTGTGAACTGTATTA-TTATTTGACATTTGAGGGATGTTC-CAATGTTATAAGGATAGACAT-TGGAAATGTTAACCGAGTCATAA-TCAGGTTTAGGCCTGGTATCCTAT----TATTATTTACCAAATGAATTCAGAATTAATATTGTAACATAGA-CCTAAAAAATCTATAAAA
		Mucor_hiemalis                    AAATAATTTAGATGGCCTTTGCTAGTTTTCTAGCGAATGGTTCA-TTCTTTTTTACTGTGAACTGTTTTAATTTTTCAGCGTCTGAGGAATGTCT-TTTAGCCATAGGGATAGGCTA-CTAGAATGTTAACCGAGCTGAAAGTCAGGCTTAGGCCTGGTATCCTAT---TAATTATTTACCAAAAGAATTCAGTATTATAATTGTAACATAAG-CGTAAAAAACTTATAAAA
		Poitrasia_circinans               AAATAAATGAGAAAGTAACTGGGAGCTCTTCTGCTCTCATTACTCTTCTATTTTACTGTGAACCGTTTTA-TTCCACAACGTTTGAGGAATGTTC-TTATGCCATAGGGGTAGGCAT-ATGAAATGTTAACCGAGTTGTGA-TCAAGCTTAGGCTTGGTACCCTGT-TTATATACTTTTATCCATTGATCAGATTATAAAAATGTAACATAGGTAGTAATA--TCTATAAAA
		Gilbertella_persicaria            AAATGAATATGAT-ATAGTCA-------TCTTCCGGCTATTA----TCTATTTTACTGTGAACTGTTTTA-TTACACAGCGCTTGAGGAATGTCTGTTCTACTATATGGGTAGGTAGGATAGAATGTTAACCGAGCTGTGG-TCAAGCTTAGGCTTGGTACCCAATATTATACAAATTT-TCAATTGATCAGATATAAATATTGTAACATAGATGGTAAAACGTCTATAAAA
		Choanephora_infundibulifera       AAATAAATGAGAAAGTAACTGGGAGCTCTTCTGCTCTCATTACTCTTCTATTTTACTGTGAACCGTTTTA-TTCCACAACGTTTGAGGAATGTTC-TTATGCCATAGGGGTAGGCAT-ATGAAATGTTAACCGAGTTGTGA-TCAAGCTTAGGCTTGGTACCCTGT-TTATATACTTTTATCCATTGATCAGATTATAAAAATGTAACATAGGTAGTAATA--TCTATAAAA
		Blakeslea_trispora                AAATAAATAAGAA-GTAATTAGG----CTCGTCCTGTTACTA----TNTATTTTACTGTGAACTGTTTTA-TTTTACAGCGTTTGAGGGATGTTC-TTGTGCTATATGGGTAGGCAT-AAGAAATGTTAACCGAGCTGTAA-TCAGGCTTAGGCTTGGTACCCTGT-TTATATACTTTCA---ATTGATCAGATTTTAAAA-TGTAACATAG--AGTAAAA--TCTATAAAA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 232 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;