#NEXUS [written Sat Jan 23 20:57:26 CST 2016 by Mesquite version 3.04 (build 725) at l-PC/192.168.1.198] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=13; TAXLABELS Arborophila_ardens Chrysolophus_amherstiae Lophophorus_lhuysii Meleagris_gallopavo Phasianus_colchicus Pucrasia_macrolopha Syrmaticus_reevesii Tetraophasis_szechenyii Tragopan_temminckii Arborophila_rufipectus Arborophila_brunneopectus Gallus_gallus Anas_platyrhynchos ; END; BEGIN CHARACTERS; TITLE intron_sequences; DIMENSIONS NCHAR=4532; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Arborophila_ardens AAGAGCTTCTTTATTCTCTCCTCACTCTTACAAATCACAGGTTAATCTTA Chrysolophus_amherstiae AAGAGATTCCTTATTCTCTCCTTGCCCTTACAAATCACTAGTTATTCTTA Lophophorus_lhuysii GTAAGATTCCTTATTCTCTCCTTGCCCTCACAAATCACTAGTTATTCTTA Meleagris_gallopavo AAGAGATTCTTTATTCTCTCCTTGCCCTCACAAATCACTAGTTATTCTTA Phasianus_colchicus AAGAGATTCCTTATTCTCTCCTTGCCCTCACAAATCACTAGTTATTCTTA Pucrasia_macrolopha AAGAGATTCCTTATTCTCTCCTTGCCCTCACAAATCACTAGTTATTCTTA Syrmaticus_reevesii AAGAGATTCCTTATTCTCTCCTTGCCCTTACAAATCACTAGTTATTCCTT Tetraophasis_szechenyii GTAAGATTCCTTATTCTCTCCTTGCCCTCACAAATCACTAGTTATTCTTA Tragopan_temminckii AAGAGATTCCTTATTCAATCCTTGCCCTCACAAATCACTAGTTATTCTTA Arborophila_rufipectus AAGAGATTCTTTATTCTCTCCTCACTCTTACAAATCACAGGTTAATCCTA Arborophila_brunneopectus AAGAGATTCTTTATTCTCTCCTCACTCTTACAAATCACAGGTTAATCCTA Gallus_gallus AAGAGATTCCTTATTCTCTCCTCACCTTCACAAATCACTAGTTAATCTTA Anas_platyrhynchos GTAAGATTCTTGAT---CTCTGCACCCTCACAAATCAGTAGTTAATCTTA Arborophila_ardens TGCAGACTTTGTATTGCTCTCAAGGATTTTTAAGCAATAAGTTCCTTCAA Chrysolophus_amherstiae TGCAGAGTTTGTATTGCTGTCAAGGATTTTTAAACAATAAGTTCCTTCAA Lophophorus_lhuysii TGCAGAGTTTGTTTTCCTCTCAAGGATTTTTAAACAATTAGTTCCTTCAA Meleagris_gallopavo TGCAGAATCTGTATTGCTCTCAAAGATTTTTAAACAATAAGTTTCTTCAA Phasianus_colchicus TGCAGAGTTTGTATTGCTCTCAAGGATTTTTAAACAATAAGTTCCTTCAA Pucrasia_macrolopha TGCGGAGTTCGTATTGCTCTCAAGGATTTTTATACAATAAGTTCCTTCAA Syrmaticus_reevesii TGCAGAGTTTGTATTGCTCTCAAAGATTTTTAAACAATAAGTTCCTTCAA Tetraophasis_szechenyii TGCAGAGTTTGTTTTCCTCTCAAGGATTTTTAAACAATTAGTTCCTTCAA Tragopan_temminckii TGCAGAGTTTGTATTGCTCTCAAGGATTTTTAAACAATAAGTTCCTTCAA Arborophila_rufipectus TGCAGACTTTGTATTGCTCTCAAGGATTTTTAAGCAATAAGTTCCTTCAA Arborophila_brunneopectus TGCAGACTTTGTATTGCTCTCAAGGATTTTTAAGCAATAAGTTCCTTCAA Gallus_gallus TGCAGAGTTTATACTGCTCTCAAGGATTTTTAAACAATAAGTTCCTTCAA Anas_platyrhynchos TGCAGGGTTTGCATTGATTTCAATGAGTTTTGACCAAAAAGGTCCTTCAT Arborophila_ardens AACTGCACCACAGAAATTTACAGCCAAATAATTAGCAGAAAACAAACTTG Chrysolophus_amherstiae AACTGCACCACATGAATTCATA-TGAAATAATTAGCAAAAAGCAAACTTG Lophophorus_lhuysii AACTGCACCACATGAATTCACAGTCAAATAATTAGCAAAAAGCAAACTTG Meleagris_gallopavo AACTGCACTACATGAATTCACA-TCAAATAATTATGAAAAAGCAAACTTG Phasianus_colchicus AACTGCACTACATGAATTCATA-TGAAGTAATTAGCAAA-------CTTG Pucrasia_macrolopha AACTGCACCACATGAATTCACA-TCAAATAATTAGCAAAAAGCAAACTTG Syrmaticus_reevesii AACTGCACCACATGAATTCATA-TGAAATAATTAGCAAAAAGCAAACTTG Tetraophasis_szechenyii AACTGCACCACATGAATTCACAGTCAAATAATTAGCAAAAAGCAAACTTG Tragopan_temminckii AACTGCACCACATGAATTCACA-TCAAATAATTAGCAAAAAGCAAACTTG Arborophila_rufipectus AACTGCACCACAGAAATTTACAGCCAAATAATTAGCAGAAAACAAACTTG Arborophila_brunneopectus AACTGCACCACAGAAATTTACAGCCAAATAATTAGCAGAAAACAAACTTG Gallus_gallus AACTGCACCACATGAATTCACAGTCAAATAATTAGCAAAAAGCAAACCTG Anas_platyrhynchos AACTGTATCACAGAAATTCATAGTCAAATAATTAGCTAGTAGCAAATGTG Arborophila_ardens CAAGTAGAATCCATGATTTTGGATTTCCATTCAAACTCTCAATATAAACA Chrysolophus_amherstiae T-AGCAGAATCCATGATTTTGGATTTCCATTCAAACTCTCAGTATAAACA Lophophorus_lhuysii CTAGTAGAATCCATGATTTTGGATTTCTATTCAAACTCTCAATATAAACA Meleagris_gallopavo C-AGTAGAATCCATGATTTTGGATTTCCATTCAGACTCTCAATATAAACA Phasianus_colchicus T-AGTAGAATCCATGATTTTGGATTTCCATTCAAACTCTCAATATAAACA Pucrasia_macrolopha C-AGTAGAATCCATGATTTTGGATTTTCATTCAAACTCTTAGTATAAACA Syrmaticus_reevesii T-AGTAGAATCCATGATTTTGGATTTCCATTCAAACTCTCAACATAAACA Tetraophasis_szechenyii CTAGTAGAATCCATGATTTTGGATTTCTATTCAAACTCTCAATATAAACA Tragopan_temminckii C-AGTAGAATCCATGATTTTGGATTTCCACTCAAACTCTCAAAATAAACA Arborophila_rufipectus CAAGTAGAATCCATGATTTTGGATTTCCATTCAAACTCTCAATATGAACA Arborophila_brunneopectus CAAGTAGAATCCATGATTTTGGATTTCCATTCAAACTCTCAATATGAACA Gallus_gallus CAAGTAGAATTCATGATTTTGGATTTCCATTCAAACTCTCAATATAAACA Anas_platyrhynchos AGAGCAGAATCCCTGTTTTTGGATTTCCAGTCAAACTGTCAATATAAGCA Arborophila_ardens TTCTTGACCTCAGAAAGATACACTGCAGATAAAGA-------TCTTTATT Chrysolophus_amherstiae TTTTTGACCTCAAAAAGATACATTGCAGATAAAGACCTTTAATCTTTGTT Lophophorus_lhuysii TTCTTGACCT-AAAAAAATACATTGCAGATAAAGACCTTTACTCTTTGTT Meleagris_gallopavo TTTTTGACCTCAAAAAGATACA-------TAAGGACCTTTACTCTTTGTT Phasianus_colchicus TTCTTAACCTCGAAAAGATACACTGCAGATAAAGACCTTTACTCTTTGTT Pucrasia_macrolopha TTCTTGACCTCAAAAAGATACA-------TAAAGACCTTTACTCTTTATT Syrmaticus_reevesii TTCTTGACCTCAAAAAGATACATTGCAGATAAAGACCTTTACTCTTTGTT Tetraophasis_szechenyii TTCTTGACCT-AAAAAAATACATTGCAGATAAAGACCTTTACTCTTTGTT Tragopan_temminckii TTCTTGACCTCAAAAAGATACATTGCAGATAAAGACCTTTACTCTTTGTT Arborophila_rufipectus TTCTTGACCTCAGAAAGATACACTGCAGATAAAGA-------TCTTTATT Arborophila_brunneopectus TTCTTGACCTCAGAAAGATACATTGCAGATAAAGA-------TCTTTATT Gallus_gallus TTCTTGACCTCAAAAAGATACACTGCAGATAAAGACCTTTACTCTTTATT Anas_platyrhynchos TTCCTGAGCTGAAAAGGATACATTGGTTATAAAGGCATTTATTCCTTGTT Arborophila_ardens CAGTAACTCAGTTGCAGGGACAATCCTCACCAAAATGAGAAGTGGTATTC Chrysolophus_amherstiae CAGTACCTCAGTTGCAGGGACAACCCTTGCCAAAATGAAAAGTGGTATTC Lophophorus_lhuysii TAGTACCTCAGTTGCAGGGACAACCCTTGCCAAAATGAAAAGTAGTATTC Meleagris_gallopavo CAGTACCTCAGTTGCAGGGACAACCTTTGCCAAAACTAAAAGTGGTATTC Phasianus_colchicus CAGTACCTCAGTTGCAGGGACAACCCTTGCCAAAATGAAAAGTGGTATTC Pucrasia_macrolopha CAGTACCTCAGTTGCAGGGACAACCTT-GCCAAAACAAAAAGTGGTATTC Syrmaticus_reevesii CAGTACCTCAGTTGCAGGGACAACCCTTGCCAAAATGAAAAGTGGTATAC Tetraophasis_szechenyii TAGTACCTCAGTTGCAGGGACAACCCTTGCCAAAATGAAAAGTAGTATTC Tragopan_temminckii CAGAACCTCAGTTGCAGGGACAACCCTTGCCAAAATGAAAAGTGGTATTC Arborophila_rufipectus CAGTAACTCAGTTGCAGGGACAACCCTCGCCAAAATGAGAAGTGGTATTC Arborophila_brunneopectus CAGTAACTCAGTTGCAGGGACAACCCTCGCCAAAATGAGAAGTGGTATTC Gallus_gallus CAGTACCTCAGTTGCAGGGAATACCCTTGCCAAAAAGAAAAGTGGTATTC Anas_platyrhynchos CAGTATGTCAGTTGTAAGGACAAATCCAATAAAAAAGGAAAATG---TCC Arborophila_ardens CGGCATTACAAAAGCTCTCCAGGGCTCTCTAGGGCTGCAACTCCTGTAAT Chrysolophus_amherstiae TGGTATTGCAAAAATTCTCTAGGGCTCTTTAGGGCTGCACCTCCTGTAAT Lophophorus_lhuysii TGGTATTACAAAACTTCGCCAGGGCTCTCTAGGGCTGCACCTCCTGTAAT Meleagris_gallopavo TGGTATTGCAAAAGTTCTGCAGGGCTCTCTAGGGCCGCACCTCCTATAAT Phasianus_colchicus TGGTATTGCAAAAGTTCTCCAGGGCTCTTTAGGGCTGTACCTCCTGTAAT Pucrasia_macrolopha TGGTATTGCAAAAGTTTTCCAGGGCTCTCTAGGGCTGCAGCTCCTGTAAT Syrmaticus_reevesii TGGTATTGCAAAAGTTCTCTAGGGCTCTTTAGGGCTGCACCTCCTATAAT Tetraophasis_szechenyii TGGTATTACAAAACTTCGCCAGGGCTCTCTAGGGCTGCACCTCCTGTAAT Tragopan_temminckii TGCTATTGCAAAAGTTCACCAGGGCTCTCTAGGGCTGCACCTCCTGTAAT Arborophila_rufipectus CGAAATTACAAAAGCTCTCCAGGGCTCTCTAGGGCTGCAACTCCTGTAAT Arborophila_brunneopectus CGAAATTACAAAAGCTCTCCAGGGCTCTCTAGGGCTGCAACTCCTGTAAT Gallus_gallus TGGTATTACTAAAGTTCTCCAGGGTTCTCTTGGTCTGCACCTCCTGTAAT Anas_platyrhynchos TAGTATCACAAAAG--CATCGGTGC-CTCCAGGGCTGCAACCCCTGTGAC Arborophila_ardens AAATTCAAAGAGAAAATGAAATGTGATTTGATCTTCTCACACTCCCAAGG Chrysolophus_amherstiae AAATTCTAAGAGAAAGTGAGATATGACTTGATCTTCTCATGCTCCCAAGG Lophophorus_lhuysii AAATTCTAAGAGAAAGTGAGATGTGATTTCATTTTCTAACGCTCC-AAGG Meleagris_gallopavo AAATAG-GAAATAAAGTGAGATGTGATTTGATCTTCTCACACTCCCAAGG Phasianus_colchicus AAATTCTAAGAGAAAGTGAGATATGATTTGATCTTCTCATGCTCCCAAGG Pucrasia_macrolopha AAATTCTAAGAGAAAGTGAGATGTGATTTGATCTTCTCATGCTCCCAAGG Syrmaticus_reevesii AAATTCTAAGAGAAAGTGAGATATGATTCGATCTTCTCATGCTCCCAAGA Tetraophasis_szechenyii AAATTCTAAGAGAAAGTGAGATGTGATTTCATTTTCTAACGCTCC-AAGG Tragopan_temminckii AAATTCAAAGAGAAAGTGAGATATGATTTGATCTTCTCACGCTCCCAAGG Arborophila_rufipectus AAATTCTAAGAGAAAGTGAAATGTGATTTGATCTTCTCACACTCTCAAGG Arborophila_brunneopectus AAATTCTAAGAGAAAGTGAAATGTGATTTGATCTTCTCACACTCTCAAGG Gallus_gallus AAATTCTAAGAGAAAGTGAAATGTGATTTGATCTTCTCACACTCCCAATG Anas_platyrhynchos AAATTTCAA--------GAAATTTAGTTTGATCTTCTCCCACTTCCAAGG Arborophila_ardens AATAAGTTGTCTTTCCACAGCAGGCTGAGGTAAAGATTTGAGCACAGATC Chrysolophus_amherstiae AATAAGTTGTCTTTCCACAGCAGGTTGAGGTAAAGATTTGAGCACAGGTT Lophophorus_lhuysii AATAAGTTGTCTTTCCACAGCAGGTTCAGGTAAAGATTTGAGCACAGGTT Meleagris_gallopavo AATAAGTTGTCTTTCCACAGCAGGTTGAGGTAAAGATTTGAGCACAGGTT Phasianus_colchicus AATAAGTTGTCTTTCCACAGCAGGTTGAGGTAAAGATTTGAGCACAGGTT Pucrasia_macrolopha AATAAGTTGTCTTTCCACAGCAGGTTGAGGTAAAGATTTGAGCACAGGTT Syrmaticus_reevesii AATAAGTTGTCTTTCCACAGCAGGTTGAGGTAAAGATTTGAGCACAGGTT Tetraophasis_szechenyii AATAAGTTGTCTTTCCACAGCAGGTTCAGGTAAAGATTTGAGCACAGGTT Tragopan_temminckii AATAAGCTGTCTTTCCACAGCAGGTTGAGGTAAAGATTTGAGCACAGGTT Arborophila_rufipectus AATAAGTTGTCTTTCCACAGCAGGCTGAGGTAAAGATTTGAGCACAGATC Arborophila_brunneopectus AATAAGTTGTCTTTCCACAGCAGGCTGAGGTAAAGATTTGAGCACAGATC Gallus_gallus AATAAGTTGTCTTTCCACAGCAGGTTGAGGTAAAGATTTGAGCACAGATC Anas_platyrhynchos AATGAGCTGTCTCTCCACAGTAGGCTGAGGTAAAGCATTGAGCACAGATG Arborophila_ardens TGTATTCAATCCTCCTTTTCAATCTTTAGGATGTTCTCAGCCTTTCTAAC Chrysolophus_amherstiae TGTATTCAATCCTCCTTTTCAATCCTTAGGATGTTCTCAGCCTTTCTAAC Lophophorus_lhuysii TGTATTCAATCCTGCTTTTCAATCCTTAGGATGTTCTCAGCCTTTCTAAC Meleagris_gallopavo TGTATTCAATCCTCCTTTTCAATCGTTAGAATGTTCTCAGCCTTTCTAAC Phasianus_colchicus TGTATTCAATCCTCCTTTTCAATCCTTAGAATGTTCTCAGCCTTTCTAAC Pucrasia_macrolopha TTTATTCAATCCTCCTTTTCAATCCTTAGGATGTTCTCAGCCTTTCTAAC Syrmaticus_reevesii TGTGTTCAATCCTCCTTTTCAATCCTTAGGATGTTCTCAGCCTTTCTAAC Tetraophasis_szechenyii TGTATTCAATCCTGCTTTTCAATCCTTAGGATGTTCTCAGCCTTTCTAAC Tragopan_temminckii TGTATTCAATCCTCCTTTTCAATCCTTAGGATGTTCTCAGCCTTTCTAAC Arborophila_rufipectus TGTATTCAATCCTCCTTTTCAATCTTTAGGATGTTCTCAGCCTTTCTAAC Arborophila_brunneopectus TGTATTCAATCCTCCTTTTCAATCTTTAGGATGTTCTCAGCCTTTCTAAC Gallus_gallus TGTATTCACTCCTCCTTTTCAATCCTTAGGATGTTCTCAGCCTTTCTAAC Anas_platyrhynchos TGTATTCAATCCTCCTATTCGCTCCCCAGGGTGTTCTCAGCCTGTCCAAC Arborophila_ardens AGTAACACATTGAAAATGTTGTTGTATATTTCCATGATCCATGTTATAGG Chrysolophus_amherstiae AGTAACACATTGAAAATGT-GTTGTATATTTACATGATCCATGTTATAGG Lophophorus_lhuysii AGTAACACATTGAAAATGTTGTTGTATACTTACATGATCCATGTTATAAG Meleagris_gallopavo AGTAACACATTGAAGATGTTGTTGCATATTTACATGATCCGTGTTATAGG Phasianus_colchicus AGTAACACATTGAAAATGT-GTTGTATATTTACATGATCTATGTTATAGG Pucrasia_macrolopha AGTAACACATTGAAAATGTTGTTGTATATTTACATGATTCATGTTATAGG Syrmaticus_reevesii AGTAACACATTGAAAATGT-GTTGTATATTTACATGATCCATGTTATAGG Tetraophasis_szechenyii AGTAACACATTGAAAATGTTGTTGTATATATACATGATCCATGTTATAGG Tragopan_temminckii AGTAACACATTGCAAATGTTGTTGTATATTTACATGATCCATGTTATAGG Arborophila_rufipectus AGTAACACATTGAAAATGTTGTTGTATATATACATGATCCATGTTATAGG Arborophila_brunneopectus AGTAACACATTGAAAATGTTGTTGTATATATACATGATCCATGTTATAGG Gallus_gallus AGTAACACATTGAAAATGT---TGTATATTCACATGATCCGAGTTATAGG Anas_platyrhynchos AGTAACACATTGAAAATGTTGTTATATATTTACATGATCCATGTTGTAGG Arborophila_ardens CATATGTTAGACTGCTGCTAGCTGATGCCTCATAAGCAAGCTTTTGACAG Chrysolophus_amherstiae CATATGTTAGACTGCTGCTAGCTGATGCCTCATAAGCAAGCTTTTGACAG Lophophorus_lhuysii CATATGTTAGACTGCTGCTAGCTGATGCCTCGTAAGCAAGCTTTTGACAG Meleagris_gallopavo CATGTGTTAGACTGCTGCTAGTTGATGCCTCATAAGCAAGCTTTTGACAG Phasianus_colchicus CATATGTTAGACTGCTG-------ATGCCTCATAAGCAAGCTTTTGACAG Pucrasia_macrolopha CATATGTTAGACTATTGCTAGCTGATGCCTCATAAGCAAGCTTTTGACAG Syrmaticus_reevesii CATATGTTAGACTGCTGCTAGCTGATGCCTCATAAGCAAGCTTTTGACAG Tetraophasis_szechenyii CATATGTTAGACTGCTGACAGCTGATGCCTCAAAAGCAAGCTTTTGACAG Tragopan_temminckii CATATGTTAGACTGCTGCTAGCTGATGCCTCATAAGCAAGCTTTTGACAG Arborophila_rufipectus CATATGTTAGACTGGTGACAGCTGATGCCTCAAAAGCAAGCTTTTGACAG Arborophila_brunneopectus CATATGTTAGACTGCTGACAGCTGATGCCTCAAAAGCAAGCTTTTGACAG Gallus_gallus CTTATGTTAGACTGCTGAGAGCTGATGTCTCATAAGCAAGTTTTTGACAG Anas_platyrhynchos CATATGTTAGATTGCTGATAGCTGATGTCTCAGAAACAAGCTTTTGATAG Arborophila_ardens TGTTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTACACTGCTATGA Chrysolophus_amherstiae TGTTGCTGTGTAATAACAATTCCCTTAGTTAAGGCTTTACACTGCTATGA Lophophorus_lhuysii TGTTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTACACTGCTATGA Meleagris_gallopavo TGTTGCTGTGTAATCACAATTCCCTTAGTGAAGGCTTTACACTGCTATGA Phasianus_colchicus TGTTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTACACTGCTATGA Pucrasia_macrolopha TGTTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTACACTGTTATGA Syrmaticus_reevesii TGTTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTACACTGCTATGA Tetraophasis_szechenyii CATTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTGCACTGCCATGA Tragopan_temminckii TGTTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTT----------GA Arborophila_rufipectus CATTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTGCACTGCCATGA Arborophila_brunneopectus CATTGCTGTGTAATCACAATTCCCTTAGTTAAGGCTTTGCACTGCCATGA Gallus_gallus TGTTGCTGTGTAATCACAGTTCCCTTAGTTAAGGCTTTACACTGCTATGA Anas_platyrhynchos TGTTGCTGTGTAATCGCAACTCCCTTAGTTAAGGCTTTACACTGCTATGA Arborophila_ardens CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Chrysolophus_amherstiae CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Lophophorus_lhuysii CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Meleagris_gallopavo CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Phasianus_colchicus CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Pucrasia_macrolopha CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTGAG Syrmaticus_reevesii CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Tetraophasis_szechenyii CTTCTGCCAAGATTTTTAGTTGTGCACTGACTTCAGGAATTATGACTTAG Tragopan_temminckii CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Arborophila_rufipectus CTTCTGCCAAGATTTTTAGTTGTGCATTGACTTCAGGAATTATGACTTAG Arborophila_brunneopectus CTTCTGCCAAGATTTTTAGTTGTGCATTGACTTCAGGAATTATGACTTAG Gallus_gallus CTTCTGCCAAGATTTTTAGTTGTGCCTTGACTTCAGGAATTATGACTTAG Anas_platyrhynchos CTTCTGCCAAGATTTTTAGTTGTGCTTTGACTTCAGGAATTATGACTTAG Arborophila_ardens AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Chrysolophus_amherstiae AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Lophophorus_lhuysii AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Meleagris_gallopavo AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Phasianus_colchicus AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Pucrasia_macrolopha AAGTTCTATATTTATCTTAATTGAGTGGATTAAAGTGTCCTTAAAATCCA Syrmaticus_reevesii AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Tetraophasis_szechenyii AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Tragopan_temminckii AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Arborophila_rufipectus AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Arborophila_brunneopectus AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Gallus_gallus AAGTTCTATATTTATCTTAATTGGGTGGATTAAGGTGTCCTTAAAATCCA Anas_platyrhynchos AAGTTCTATATTTATCTTAATTGGGTGGATTAAAGTGTCCTTAAAATCCA Arborophila_ardens AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTGGGATTACCTTTTT Chrysolophus_amherstiae AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTGGGATTACCTTTTT Lophophorus_lhuysii AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTGGGATTACCTTTTT Meleagris_gallopavo AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTGGGATTACCTTTTT Phasianus_colchicus AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTGGGATTACCTTTTT Pucrasia_macrolopha AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTGGGATTACCTTTTT Syrmaticus_reevesii AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTGGGATTACCTTTTT Tetraophasis_szechenyii AATTAAATCTAATCTCTAAGGGGAAATA-GCCCTCTAGGATTACCTTTTT Tragopan_temminckii AATTAAATCTAATCTCTAAGGGGAAAAAGGCCCTCTGAGATTACCTTTTT Arborophila_rufipectus AATTAAATCTAATCTCTAAGGGGAAATA-GCCCTCTAGGATTACCTTTTT Arborophila_brunneopectus AATTAAATCTAATCTCTAAGGGGAAATA-GCCCTCTAGGATTACCTTTTT Gallus_gallus AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTAGGATTACCTTTTT Anas_platyrhynchos AATTAAATCTAATCTCTAAGGGGAAAAAAGCCCTCTAGGATTACCTTTTT Arborophila_ardens GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Chrysolophus_amherstiae GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Lophophorus_lhuysii GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATGTTCATCTA Meleagris_gallopavo GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Phasianus_colchicus GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Pucrasia_macrolopha GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCCAGTTCATTTTCATCTA Syrmaticus_reevesii GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Tetraophasis_szechenyii GTTCTTTTCACAGAGGTCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Tragopan_temminckii GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Arborophila_rufipectus GTTCTTTTCACAGAGGTCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Arborophila_brunneopectus GTTCTTTTCACAGAGGTCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Gallus_gallus GTTCTTTTCACAGAGATCCTTCAGTAGTGCATCAAGTTCATTTTCATCTA Anas_platyrhynchos GTTCTTTTCACAGAGATCCTTCAGCAGTGCATCAAGTTCATTCTCATCTA Arborophila_ardens TATATCCATTGCCATCCTGAAAAATAGCATTAAAGAGAACATCAAGCATG Chrysolophus_amherstiae TATATCCATTTCCATCCTGAAAAATAGCATTAAAGAGAACATCAAGCATT Lophophorus_lhuysii TATATCCATTGCCATCCTGAAAAATAGCATTAAAGAGAACATCAAGCATT Meleagris_gallopavo TATATCCATTGCCATCCTGAAAAATAGCATTAAAGAGAACATCAAGCATT Phasianus_colchicus TATATCCATTTCCATCCTGAAAAATAGCATTAAAGAGAACATCAAGCATT Pucrasia_macrolopha TATATCCATTACCATCCTGAAAAATAGCATTAAAGAGAACATCAAGTATT Syrmaticus_reevesii TATATCCATTTCCATCCTGAAAAATAGCATTAAAGAGAACATCAAGCATT Tetraophasis_szechenyii TATATCCATTGCCATCCTGAAAAATAACATTGAAGAGGATGTCAGGCATT Tragopan_temminckii TATATCCATTGCCATCCTGAAAAATAGCATTAAAGAGAACATGAAGCATT Arborophila_rufipectus TATATCCATTGCCATCCTGAAAAATAACATTGAAGAGGACGTCAGGCATT Arborophila_brunneopectus TATATCCATTGCCATCCTGAAAAATAACATTGAAGAGGACGTCAGGCATT Gallus_gallus TATATCCATTGCCATCCTGAAAAATAACATTAAAGAGAACATCAGGCATT Anas_platyrhynchos TGTATCCGTTCCCATCCTGAAAAATAATATTAAAGAGAATTTTGAGCATT Arborophila_ardens TATTCTTCTCTTCAGAGGTTTTCCCCAAATTCAGAAAACAAGGGCCATTA Chrysolophus_amherstiae TATTCTTCTTTTCAGAGGTTTTCCCCAAATTCAGAAAACAAGTGCCTTTA Lophophorus_lhuysii TATTCTTCTCTTCAGAGGTTTTCCCCAAATTCAGAAAACAAGTGCCATTA Meleagris_gallopavo TGTTCTTCTTTTCAGAGGTTTTCCCCAAATTCAGAAAACAAGTGCCATTA Phasianus_colchicus TATTCTTCTTTTCAGAGGCTTTCCCCAAATTCAGAAAACAAGTGCCATTA Pucrasia_macrolopha TATTCTTCTTTTCAGAGGTTTTCCCCAAATTCAGAAAACAAGTGCCATTA Syrmaticus_reevesii TATTCTTCTTTTCAGAGGTTTTCCCCAAATTCAGAAGACAAGTGCCATTA Tetraophasis_szechenyii TATTCTTCTTTTCAGAGGTTTTCCACAAATTCAGAAAATAAGTGCCATCA Tragopan_temminckii TATTCTTCTTTTCAGAGGTTTTCCCCAAATTCAGAAAACAAGTGCCATTA Arborophila_rufipectus TATTCTTCTTTTCAGAGGTTTTCCACAAATTCAGAAAATAAGTGCCATCA Arborophila_brunneopectus TATTCTTCTTTTCAGAGGTTTTCCATAAATTCAGAAAATAAGTGCCATCA Gallus_gallus TATTCTTCTTTTCAGAGGTTTTCCACAAATTCAGAAAATAAGTGCCATCA Anas_platyrhynchos TATTTTTTCTCTCGAAGGTTTTCAACAACTTCAGAAAAGAAGTGCCCTCA Arborophila_ardens AACTAATCAATTAAAAAAAAGGTAAGAAGTGTGGATAGCAGG-------- Chrysolophus_amherstiae AAATAATCAATTAATAAAAAGGTAAGAAGCGTGGATGGCAGGGATGCTCA Lophophorus_lhuysii AACTAATCAATTAATAAAAAGGTAAGAAGCATGAATGGCAGGGACGCTCA Meleagris_gallopavo AACTAATTAGTTACTAAAAAGGTAAGAAGCGTGGATGGCAGGGATGCTCA Phasianus_colchicus AACTAATCAATTAATAAAAAGGTAAGAAGCGTGGATGGCAGGGATGCTCA Pucrasia_macrolopha AACTAATCAATTAATAAAAAGGTAGGAGGGGTAGATGGCAGGGCCATTCA Syrmaticus_reevesii AACTAATCAATTAATAAAAAGGTGAGAAGCGTGGATGGCAGGGATGCTCA Tetraophasis_szechenyii AACTAATCAATTAATAAAAAGGTAAGAAGCTTGGATGGCAGGGACACTCA Tragopan_temminckii AACTAATCAATTAATAAAAAGGTAAGAAGCGTGGATGGCAGGGATGCTCA Arborophila_rufipectus AACTAATCAATTAATAAAAAGGTAAGAAGCGTAGATGGCAGGGACACTCA Arborophila_brunneopectus AACTAATCAATTAATAAAAAGGTAAGAAGTGTAGATAGCAGGGACAACTG Gallus_gallus AACTAATCAGTTAATAAAAAGGTAAGAAGCGTGGATGGCGGGGGCAATTG Anas_platyrhynchos ATCTAATAAATTACTAAGAAG-TAAGGAACAAGGATGACAGGGACAACCA Arborophila_ardens -AGCTCTTCAGGGAGCCGAACCCATTTGTCAGACATTAAACAGCACTCTG Chrysolophus_amherstiae GAGCTCTTCAGGGAGCAAAACCCATTTGTCAGGCATAAAACAGCACTCTG Lophophorus_lhuysii GAGCTCTTCAGGGAGCCGAACCCATTTGTCAGGCATAAAACAGCACTCTG Meleagris_gallopavo GAGTTCTTCAGGGAGCCAAACCCAATTGTCAGGCATAAAACAGCAATCTG Phasianus_colchicus GAGCTCTTCAGGGAGCCAAACCCATTTGTCAGGCATAAAACAGCACTCTG Pucrasia_macrolopha GAGCTCTTCAGGGAGCTTTTCCCATTTGTCAGGCATAAAACAGCACTCTG Syrmaticus_reevesii GAGCTCTTCAGGGAGCCAAACCCATTTGTCAGGCATAAAACAGCACCCTG Tetraophasis_szechenyii GAGCTCTTCAGGGAGCCGAACCCATTTGTCAGGCATAAAACAGCACTCTG Tragopan_temminckii GAGCTCTTCAGGGAGCCGAACCCATTTGTCAGGCATAAAACAGCACTCTA Arborophila_rufipectus GAGCTCTTCAGGGAGCTTTTCCCATTTGTCAGGCATAAAACAGCACTCTG Arborophila_brunneopectus GAGCTCTTCAAGGAGCCAAACCCATTTGTCAGACATTAAACAGCACTCTG Gallus_gallus GAGCTCTTCAGGGAGCCAAACCCATTTGTCAGGCATAAAACAGCGCTCTG Anas_platyrhynchos GAGCTCTTCGGGGAGCAGATCCCATTTGTGAGGCATAAAATAGCA----- Arborophila_ardens AGCAGCAAGCCCAGGTCAGATCAGCAGAACTTCCTCCAT-GGATGCTGTT Chrysolophus_amherstiae AGCAGCAAGTCCTGGTCAGATCA-CAGAACTTCTTCCCTTGGATGCTGTT Lophophorus_lhuysii AGCAGCAAGTC-TGGTCAGATCAGCAGAACTTCTTCCCTTGGATGCTGTT Meleagris_gallopavo AGCAGCAAGTCCTGGGAAGAAGTTCTGCTGATATGACCTTGGATGCTGTT Phasianus_colchicus AGCAGCAACTCCTGGTCAGATCAGCAGAACTTCTTCCTTTGGATGCTGTT Pucrasia_macrolopha AGCAGCAAGTCCTGGTCAGATCAGCTGAACTTCTTCCCTTGGATGCTGTT Syrmaticus_reevesii AGCAGCAACTCCTGGTCAGATCAGCAGAACTTCTTCCCTTGGATGCTGTT Tetraophasis_szechenyii AGCAGCAAGTCCTGGTCAGATCAGCAGAACTTCTTCCCTTGGATGCCGTT Tragopan_temminckii AGCAGCAAGCCCCAGTCAGATCAGCAGAACTTCTTCCCTTGGATGCTGTT Arborophila_rufipectus AGCAGCAAGTCCTGGTCAGATCAGCTGAACTTCTTCCCTTGGATGCTGTT Arborophila_brunneopectus AGCAGCAAGCCCAGGTCAGATCAGCAGAACTTCTTCCAT-GGATGCTGTT Gallus_gallus AGCAGCAAGTCCTGGTCAGATCAGCAGAACTTCTTCCCTTGGATGCTGTT Anas_platyrhynchos -----TAAGTCCCAGGCAGACGAGCAGGACCTC---------------TT Arborophila_ardens CCCTTGTGATACTACAGACAGCCTATAGCTATGACCCACAAGCCCTCACC Chrysolophus_amherstiae CCCTTGACATACCACAGACAGCCTATAGCTATGACCCACAAACCCTCACC Lophophorus_lhuysii CCCTTGGCATACCACAGACAGCCTATAGCTATGAACCACAAGCCCTCACC Meleagris_gallopavo CCCTTGGCATACCATAGACAGCCTATAGCTATGACCCACAAGCCCTCACC Phasianus_colchicus CCCTTGGCATACCACAGACAGCCTATAGCTATGACCCACAAACTCTCACC Pucrasia_macrolopha CCCTTGGCATACCACAGACAGCCTATAGCTATGACTCAAAAGCCCTCACC Syrmaticus_reevesii CCCTTCGCATACCACAGACAGCCTATAGCTATGACCCACAAGCCCTCACC Tetraophasis_szechenyii CCCTTGGCATACCACAGACAGTCTACAGCTATGAACCACAAGCCCTCACC Tragopan_temminckii CCCTTGGCATACGACAGACAGCCTATAGCTATGACACACAAGCCCTCACC Arborophila_rufipectus CCCTTGGCATACCACAGACAGCCTATAGCTATGACTCAAAAGCCCTCACC Arborophila_brunneopectus CCCTTGGGATACTACAGACAGCCTATAGCTATGACCCACAAGCCCTCACC Gallus_gallus CCCTTGGCACACCACAGATAGCCTATAGCTATGAGCCACAAATCTTCACC Anas_platyrhynchos CCCTTGGCATAGCACAGGCAGCCTGCAGCCATCACCTACAGCCCCTTTCT Arborophila_ardens TCCCCCTTTTTTCTGCCCTTAGGGGTGGTAGCACGAGTTGGGTGGGTTTT Chrysolophus_amherstiae TCCCCCTTTTTTCTGCCCAGCTGGGCAGTAGCTATGGGTGCACTAGCACC Lophophorus_lhuysii TCCCCCTTTTTTCTGCCCAGCTGGGCAGTAGCTATGGGTGCACTAGCACC Meleagris_gallopavo TCCCTCTTTTTTCTGCCCAGCTGGGCAGTAGCTATGGGTGCACTAGCACC Phasianus_colchicus TCCCCCTTTTTTCTGCCCAGCTGGGCAGTAGCTATGGGTGCACTAGCACC Pucrasia_macrolopha TCCCCCCTTTTTCTGCCCAGCTGGACAGTAGCAATGGGTGCACTAGCACC Syrmaticus_reevesii TCCCCCTTTTTTCTGCCCAGCTGGGCAGTAGCTACGGGTGCACTAGCACC Tetraophasis_szechenyii TCCCCCTTTTTTCTGCTCAGCTGGGCAGTAGCTATGGGTGCACTAGCACC Tragopan_temminckii TCCCCCTTTTTTCTGCCCAGCTGGGCAGTAGCTATGGGTGCACTAGCACC Arborophila_rufipectus TCCCCCCTTTTTCTGCCCAGCTGGACAGTAGCAATGGGTGCACTAGCACC Arborophila_brunneopectus TCCCCCTTTTTTCTGCCCTTATGGGTGGTAGCACAAGTTGGGTGGGTTTT Gallus_gallus TCCCCCTTTTTTCTGCCCAGCTAGGCAGTAGCTATGGGTGTGCTAGCACC Anas_platyrhynchos TCCCGTTTGTTTCTGCCCAGCTGAGCA--AGCTG-----GCACCAGGGTT Arborophila_ardens G-TTTTGTTTTTTTAAGTCAGTACCAGAAGTAGCAGCAAGGGGAAAAGTT Chrysolophus_amherstiae AGAGTTGTTTTTTTAAGTTAGTACCAGAAGTAGCAGCAAGGGAAAAAGCT Lophophorus_lhuysii AGAGTTATTTTTTTAAGTTAGTACCAGAAGTAGCAGCAAGGGGAAAAGCT Meleagris_gallopavo AGAGTTGTTTT---------GTACCAGAAGTAGCAGCAA----------- Phasianus_colchicus AGAGTTGTTTTTTTAAGTTAGTA------GTGGCAGCAAGGGAAAAAGCT Pucrasia_macrolopha AGAATTGTTTTTTTAAGTTAGTACCAGAAGTAGCAGCAAGGGGAAAAGCT Syrmaticus_reevesii AGAGTTGTTTTTTTAAGTTAGTACCAGAAGTAGCAGCAAGGGAAAAAGCT Tetraophasis_szechenyii AGAGTTGTTTTTTTAAGTTAGTACCAGAAGTAGCAGCAAGGGGAAAAGCT Tragopan_temminckii AGAGTTGTTTTTTTAAGTTAGTACCAGAAGTAGCAGCAAGGGGGAAAGCT Arborophila_rufipectus AGAATTGTTTTTTTAAGTTAGTACCAGAAGTAGCAGCAAGGGGAGAAGCT Arborophila_brunneopectus GGTTTTTTTTTTTTAAGTCAGTACCAGAAGTAGCAGCAAGGGGAAAAGTT Gallus_gallus AGGGTTGCTTTTTTAGGTCAGTCCCAGAAGTAGCAGCAAGGGGAAAAGCT Anas_platyrhynchos G--GTGGCTTTTTGAGGTCAGTACCAGAAGCAGCAGCAAGGGGAAAAGTT Arborophila_ardens TGTGGAGAAAGTGAGTTGAAAGGCAGGCACAGCTAACTGCTACAACCAGT Chrysolophus_amherstiae TCTGGAG-AAGTGAGTTGAAAGGCAGGCACAGCTAGCTGCTACCACCAAT Lophophorus_lhuysii TCTGGAGAAAGTGAGTTGAAAGGCAGGCACAGCTAGCTGCTACGACCAAT Meleagris_gallopavo --CGGAGGAAATGAGTTGAAAGGTAGGCACAGCTAGCTGCTATGACCAAT Phasianus_colchicus TCTGGAG-AAGTGAATTGAAAGGCAGGCACAGCTAGATGCTACGACCAAT Pucrasia_macrolopha TCTGGAGAAAGTGAGTGGAAAGGCAGGCACAGCTAGCTGTTACAACCAAT Syrmaticus_reevesii TCTGGAG-AAGTGAGTTGAAAGGCAGGCACAGCTAGCTGCTACGACCAAT Tetraophasis_szechenyii TCTGGAGAAAGTGAGTTGAAAGGCAGGCACAGCTAGCTGCTACAACCAAT Tragopan_temminckii TCTGGAGAAAGTGAGTTGAAAGGCAGGCACAGCTA----------CCAGT Arborophila_rufipectus TCTGGAGAAAGTGAGTGGAAAGGCACGCACAGCTAGCTGTTACAACCAAT Arborophila_brunneopectus TCTGGAGAAAGTGAGTTGAAAGGCAGGCACAGCTAACTGCTACAACCAGT Gallus_gallus TCTGGAGAAAGGGAGTTGAAAGGCAGGCACAGCTAGCTGCTACGAACAAT Anas_platyrhynchos TCCTGAT--AGTGAGTTGAA----ATGCACAGCTGGCTGCCACAACCAGT Arborophila_ardens GCAATGGTAGCAGTCACTGCTTGTGGCCAGGAGAAAACC-AGGCAGAATG Chrysolophus_amherstiae GCAATGGTAGCAGTCACTGCTTGTGGCCAGGAAAAAAATGAGGCAGAATC Lophophorus_lhuysii GCAATGGTAGCAGTCACTGCTTGCGGCCAGGAAAAAAATGAGGCAGAATG Meleagris_gallopavo G-----GTAGCAGTCACTGCTTGTGGCCAGGAAAAAAACGAGGCAGAATG Phasianus_colchicus GCAGTGGTAGCAGTCACTGCTTGTGGCCAGGAAAAAAACGAGGCAGAATC Pucrasia_macrolopha GCAATGGTAGCAGTCACTGCTTGTGGCCAAGAAAAAAACGAGGCAGAACG Syrmaticus_reevesii GCAGTGGTAGCAGTCGCTGCTTGTGGCCAGGAAAAAAACAAGGCAGAATC Tetraophasis_szechenyii GCAATGGTAGCAGTCACTGCTTGTGGCCAGGAAAAAAATGAGGCAGAATG Tragopan_temminckii GCAATGGTAGCAGTTACTGCTTGTGGCCAGGAAAAAAACGAGGCAGAATG Arborophila_rufipectus GCAATGGTAGCAGTCACTGCTTGTGGCCAAGAAAAAAACGAGGCAGAACG Arborophila_brunneopectus GCAATGGTAGCAGTCACTGCTTGTGGCCAGGAGAAAACC-AGGCAGAATG Gallus_gallus GCAATGGTAGCAGTCACTGCTTGTGGCCAGGAAAAATCCAAGGCAAAATG Anas_platyrhynchos GCAGGGACAGCAGTCACTGCTTGTGGCCAAGGAGAAAACCATGTGAAATG Arborophila_ardens CCTCAACTCCTCTCCCAACCCAGTAAATTTTGCTAAGCAATTTGGAGAAG Chrysolophus_amherstiae CCTCAACTCGTCTCCCATCCCTGTAAATTTTGCTAACCAGTTTGGAGAAA Lophophorus_lhuysii CCTCAACTCCTCTCCCATCCCATTAAATTTTGCTAACCAGTTTGGAGAAA Meleagris_gallopavo CCTCAACTTCTCTCCCATCCCAGTAAATTTTGCTAACCCATTTGGAGAAA Phasianus_colchicus CCTCAACTCCTCTCCCATCCTAGTAAATTTTGCTAACCAGTTTGGAGAAA Pucrasia_macrolopha CCTCAACTCCTCTCCCATCCCAGTAAAATTTGCTAACCATTTTGGAGAAA Syrmaticus_reevesii CCTCAACTCCTCTCCCATCCCAGTAAATTTTGCTAACCAGTTTGGAGAAA Tetraophasis_szechenyii CCTCAACTCCTCTCTTATCCCAGTAAATTTTGCTAACCAGTTTGGAGAAA Tragopan_temminckii CCT----------CCCATCCCAGTAAATTTTGCTAACCAGTTCGGAGAAA Arborophila_rufipectus CCTCAACTCCTCTCCCATCCCAGTAAAATTTGCTAACCATTTTGGAGAAA Arborophila_brunneopectus CCTCAACTCCTCTCCCACCCCAGTAAATTTTGCTAAGCAATATGGAGAAG Gallus_gallus CCTCAACTCCTCTCCCATCCCAGTAAATTTTGCTAACCAGTTTGGAGAAA Anas_platyrhynchos CCTCAACACCTCCCCAACCCCAAGAAATTTTACTAACGAGT--GCAGAAA Arborophila_ardens GTAATAGTGCTACCTGCCTGATCAGATACAATCTGTTGAGCAGTGGGGGA Chrysolophus_amherstiae CTAATAGTGCTACCTGCCTGACCAGATGCAATCAGTTGAGCAGTGGGGGA Lophophorus_lhuysii CTAATAGTGCTATCTGCCTGACCAGATGCAATCAGTCGAGCAGCGGGGGA Meleagris_gallopavo CTAATAGTGCTACCTGCCTGACCAGATGCAATCAGTTGAGCAGTGGGGGA Phasianus_colchicus CTAATAGTGCTACCTGCCTGACCAGATGCAATCAGTTGAGCAGTGGGGGA Pucrasia_macrolopha CTAATAGTTCTACCTGCCTGACCAGATGCAATCAGTTGAACAATGGGGGA Syrmaticus_reevesii CTAATAGTGCTACCTGCCTGACCAGATGCAATCAGTTGAGCAGTGGGGGA Tetraophasis_szechenyii CTAATAGTGCTACCTGCCTGACCAGATGCAATCAGTTGAGCAGCGGGGGA Tragopan_temminckii CTAATAGTGCTACCTGTCTGACCAGATGCAATGAGTTGAGCAG------- Arborophila_rufipectus CTAATAGTTCTACCTGCCTGACCGGATGCAATCAGTTGAGCAGTGGGGGA Arborophila_brunneopectus GTAATAGTGCTACCTGCCTGATCAGATACAATCTGTTGAGCAGTGGGGGA Gallus_gallus GTAGTAGTGCTACCTGCCTGACCAGATGCAATCAGTTGAGCAGTGGGGGA Anas_platyrhynchos GCGATAGCACTACCTGCCTCATCAGATGCGAGCTGCCTAGCACTGGGGGA Arborophila_ardens ACCTCCTCCCGCTCTGTCTGCCAACA---CTCTGCCTGTCTGTCTGTTTT Chrysolophus_amherstiae ACGTGCTCCTGCTCTGCCTGCCAGCAGCACTCTGTCTTTCTGTCCGGTTT Lophophorus_lhuysii ACGTGTTCCTGCTCTGTCTGCCAGCAGCACTCTGTCTTTCTGTCCGGTTT Meleagris_gallopavo ACGTGTTCCTG--CTGTCTGCCAGCAGCACTCTGTCTTTCTGTCTGGTTT Phasianus_colchicus ACGTGCTCCTGCTCTGTCTGCCAGCAGCACTCT--CTTTCTGTCCGGTTT Pucrasia_macrolopha ACCTGGTCCTGGTCTGGCTGGCAACAACACTCTGGCTTTCTGGCCGGGTT Syrmaticus_reevesii ACGTGCTCCTGCTCTGTCTGCCAGCAGCACTCTGTCTTTCTGTCCGGTTT Tetraophasis_szechenyii ACGTGCTCCTGCTCTGTCTGCCAGCAGCACTCTGTCTTTCTGTCCGGTTT Tragopan_temminckii ---TGCTCCTGCTCTGTCTGCCAG----------TCTTTCTGTCCGGTTT Arborophila_rufipectus ACGTGCTCCTGCTCTGTCTGCCAGCAGCACTCTGTCTTTCTGTCCGGTTT Arborophila_brunneopectus ACCTCCTCCCACT--GTCTGTCAACA---CTCTGCCTGTCTGTCTGTTTT Gallus_gallus ATGTGCTCCTGTGCTGTCTGCCAGCAGCACTCTGTCTTTCTGTCCGGTTT Anas_platyrhynchos ACCTGTTCCTGCTCTTTCTGCCACT--CAGTCGCTCTGTCTGTCTGCTTT Arborophila_ardens AGGTATGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCCTACAGG Chrysolophus_amherstiae AGGTACGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCC------ Lophophorus_lhuysii AGAAAGACAGGGGTTAGACCAGAGCCACATAG---GCTGCCTCGTACAGG Meleagris_gallopavo AGGTACGTACAGCCTTGGTTGCATTCATGTTGTCGGCTGCCTCCTACAGG Phasianus_colchicus AGGTACGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCCTACAGG Pucrasia_macrolopha AAGTACGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCCTACAGG Syrmaticus_reevesii AGGTACGTACAGCCCTGGTTGCATTCATGTTGTCGGCTGCCTCCTACAGG Tetraophasis_szechenyii AGGTACGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCCTACAGG Tragopan_temminckii AGGTACGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCCTACAGG Arborophila_rufipectus AGGTACGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCCTACAGG Arborophila_brunneopectus AGGTATGTACAGCCCTGGTTGCATTCACGTTGTCGGCTGCCTCCTACAGG Gallus_gallus AGGTACGTACAGCCCTGATTGCATTCACGTTGTCGGCTGCCTCCTACAGG Anas_platyrhynchos AGACTTCTGCAATGCAGTCTGCGTTCGCGTTGTCGGCTGCCTCCTACAGG Arborophila_ardens CACCGGCTTGCACAGTTCCTGCTTTCCTTGCTGATTGCTGACCGGGTTTT Chrysolophus_amherstiae ----AGCTTGCACAGTTCCTGCTTTCCTTGCTGATTGCTGACCAGGATTT Lophophorus_lhuysii TACCAACTTGCACAGGCAAGAGATTGGATCCTGACCAGAGCCCAGGAATT Meleagris_gallopavo CACCAGCTTGCACAGTTCCTGCTTTCGTTGCTGATTGCTGACCAGAATTT Phasianus_colchicus CACCAGCTTGCACAGTTCCTGCTTTCCTTGCTGATTGCTGACCAGGATTT Pucrasia_macrolopha CACCAGCTTGCACAGTTCCTGCTTTCGTTGCTGATTGCTGACCAGGATTT Syrmaticus_reevesii CACCAGCTTGCACAGTTCCTGCTTTCCTTGCTGACTGCTGACCAGGATTT Tetraophasis_szechenyii CACCAACTTGCACAGTTCCTGCTTTCATTGCTGATTGCTGACCAGGATTT Tragopan_temminckii CACCAGCTTGCACAGTTCCTGCTTTCCTTGCTGATTGCTGGCCAGGATTT Arborophila_rufipectus CACCAGCTTGCACAGTTCCTGCTTTCGTTGCTGATTGCTGACCAGGATTT Arborophila_brunneopectus CACCGGCTTGCACAGTTCCTGCTTTCCTTGCTGATTGCTGACCAGGTTTG Gallus_gallus CACCAGCTTGCACAGTTCCTGCTTTCGTTGCTGATTGCTGACCAGGATCT Anas_platyrhynchos CACAAATTTGCACGGTTTCTGCTTTCTTTGCTGA-------CCAGGCATT Arborophila_ardens GGGGGCAGAAAAGAGCAGCAGGCATCACGCCAGCCATTCATTTGATTTTT Chrysolophus_amherstiae GGGGGCAGAAAA----------CATCACGCCA----------TTATTTTT Lophophorus_lhuysii GGGGGCAGAAAAGAACACCAGGCATCGCGCCAGCCATTCATTAGATTTTT Meleagris_gallopavo GGGGGCAGAAAAGAACACCAGGCATCGTGCCAGCCATTCATTTTATTTTT Phasianus_colchicus GGGGGCAGAAAAGAACGCCAGGCATCAAGCCAGCCATTCATTTTATTTTT Pucrasia_macrolopha GGGGGCAGAAAAGAACACCAGGCATCATGCCAGCCATTCATTTTATTTTT Syrmaticus_reevesii GGGGGCAGAAAAAAACACTAGGCATCATGCCAGCCATTCATTTTATTTTT Tetraophasis_szechenyii GGGGGCAGAAAAGAACACCAGGCATCGCGCCAGCCATTCATTTTATTTTT Tragopan_temminckii GGGGGCAGAAAAGA----------TCGCACCAGCCATTCATTTTATTTTT Arborophila_rufipectus GGGGGCAGAAAAGAACACCAGGCATCATGCCAGCCATTCATTTTATTTTT Arborophila_brunneopectus GGGGGCAGAAAAGAGCAGCAGGCATCACGCCAGCCATTCATTTGATTTTT Gallus_gallus GGGGGCAGAAAAGAACACCGGGCATCACGCCAGCCATTCATTTGATTTTT Anas_platyrhynchos CGGGGCAGAAAAGAATAGCAGGCATTGTACCAACCGCTCGTTTTTTTTTT Arborophila_ardens CACCAGAGCATGTCTGGTTTGTTAGGATGGATGTTTTGAACACCATTAAC Chrysolophus_amherstiae CACCAGAGCATGTCTGGTTTGT----------GTTTTGAACATCATTAAC Lophophorus_lhuysii CACCAGTGCATGTACGCTTTGTTAGGATGGAAGTGAAACACATCATTAAC Meleagris_gallopavo CACCAGAGCATGTCTGGTTTGTTAGGATGGATGTTTTGAACATCATTAAC Phasianus_colchicus CACCAGAGCATGTCTGGTTTGTTAGGATGGATGTTTTGAACATCATTAAC Pucrasia_macrolopha CACCAGAACATGTCTGGTTTGTTAGGATGGATGTTTTGAACAACATTAAC Syrmaticus_reevesii CACCAGAGCATGTCTGGTTTGTTAGGATGGATGTTTTGAACATCATTAAC Tetraophasis_szechenyii CACCAGAGCATGTCTGGTTTGTTAGGATGGATGTTTTGAACATCATTAAC Tragopan_temminckii CACCAGAGCATGTCTTGTTTGTTAGGATGGATGTTTTGAACATCATTAAC Arborophila_rufipectus CACCAGAACATGTCTGGTTTGTTAGGATGGATGTTTTGAACAACATTAAC Arborophila_brunneopectus CACCAGAGCATGCCTGGTTTGTTAGGATGGATGTTTTGAACACCATTAAC Gallus_gallus CACCAGAGCTTGTCTGGTTTGTTAGGATGGATGTTTTGAACGCCATTAAC Anas_platyrhynchos CGTCAGAGTATTTCTGGTTTATTAGTATGGAGGGGTTGAAGACAATTAAC Arborophila_ardens CTTAAGGGAAGATTTCCTTGCTTGCTGCAAAGAAAATCAAAGTTCGTGTT Chrysolophus_amherstiae CTT----------TTCCTTGCTTGCTGCAAAGAAAATCAAATTTGGTGTT Lophophorus_lhuysii CTTAAGGGAAGTCAACCAAGGAAAACTTAAAGAAAATCAAATGATGTGTT Meleagris_gallopavo CTTAGGGGAAGTTTTCCTTGCTTGCTGCAAAGAAAATCAAATTTGGTGTT Phasianus_colchicus CTTAAGGGAAGTTTTCCTTGCTTGCTGCAAAGAAAATCAAATTTGGTGTT Pucrasia_macrolopha CTTAAGGGAAGTTTTCCTTGCTTGCTGCAAAGAAAATCAGATTTGGTGTT Syrmaticus_reevesii CTTAAGGGAAGTTTTCCTTGCTTGCTGCAAAGAAAATCAAATTTGGTGTT Tetraophasis_szechenyii CTTAAGGGAAGTTTTCCTTGCTTGCTGCAAAGAAAATCAAATTTGGTGTT Tragopan_temminckii CTTAAGGGAAGTTTTCCTTGCTTGTTGCAAAGAAAATCAAATTTGGTGTT Arborophila_rufipectus CTTAAGGGAAGTTTTCCTTGCTTGCTGCAAAGAAAATCAGATTTGGTGTT Arborophila_brunneopectus CTTAAGGGAAGTTTTCCTTGCTTGCTGCAAAGAAAATCAAAGTTCGTGTT Gallus_gallus CTTAAGGGAAGTTTTCCTTGC----TGCGAAGAAAATCAGATTTGGTGTT Anas_platyrhynchos CTGAATGGG-GTTTTTCTTGCTTATTGCAAAAAAAATTAAATTTGGAGTT Arborophila_ardens TCATTATGGTTGTCAGAAGGGGTTAAACGATTTCACTCATCTCTTATTAA Chrysolophus_amherstiae TCATTATAGTTTTCAGAAGGGGTTAAACGATTTCACTCATCTCTTATTAA Lophophorus_lhuysii TCAC-ATCCATTTCAGAAGGGGTTACACGATTTCACTCAAATAA-AATAA Meleagris_gallopavo TCATTATAGTTTTCAGAAGGGGTTAAACGATTTCACTCATCTCTTAATAA Phasianus_colchicus TCATTATAGTTTTCAAAAGGGGTTAAACGATTTCACTCATCTCTTAATAA Pucrasia_macrolopha TCATTATAGCTTTCAGAAGGGGTTAAACAGTTTCACTCATCTCTTACTAA Syrmaticus_reevesii TCATTATAGTTTTCAGAAGGGGTTAAACGATTTCACTCATCTCTTATTAA Tetraophasis_szechenyii TCATTATAGTTTTCAGAAGGGGTTAAACGATTTCACTCATCTCTTAATAG Tragopan_temminckii TCATTATGGTTTTCAGAAGGGGTTAAACGATTTCTCTCATCTCTTAATAA Arborophila_rufipectus TCATTATAGCTTTCAGAAGGGGTTAAACAGTTTCACTCATCTCTTAATAA Arborophila_brunneopectus TCATTATGGTTGTCAGAAGGGGTTAAACAATTTCACTCATCTCTTATTAA Gallus_gallus TCATTATAGTTTTCAGAAGGGGTTAAA?GATTTCACTCATCTCCTAATAA Anas_platyrhynchos TCGTTACAGTTCTCTGAATGGGTTAAATGATTTTACTCATTTCTTCATAA Arborophila_ardens TCAGGTAGCTGAGGGGATGCTGAGACTGACAGTTCTTGGGCTCTGAGCAG Chrysolophus_amherstiae TCAAGTAGCTGAGGAGATGCTGAGTCTGCCAGTTCTTGGGCT-------- Lophophorus_lhuysii TCAGGTAAATCAGCAGATTTTGAGTCTGCCAGTTCTTGGGCTAGCGACAG Meleagris_gallopavo TCAGGTAGCTGAGGAGATGCTGAGTCTGCCAGTTCTTGGGCTCTGGGCAG Phasianus_colchicus TCAGGTAGCTGAGGAGATGCTGAGTCTGACAGTTCTTGGGCTCCAGGCAG Pucrasia_macrolopha TCAGGTAGCTGAGGAGATGCTGAGTCTGCTGGTTCTTGGGCTCTGGGCAG Syrmaticus_reevesii TCAGGTAGCTGAGGAGATGCTGAGTCTGCCAGTTCTTGGGCTCCAGGCAG Tetraophasis_szechenyii TCACGTAGGTCAGGAGATGCTGAGTCTGCCAGTTCTCGGGCTCTGGGCAG Tragopan_temminckii TCAGGTAGCTGAGGAGATGCTGAGTCTGCCAGTTCTTGGGCTCTGGGCAG Arborophila_rufipectus TCAGGTAGCTGAGGAGATGCTGAGTCTGCTGGTTCTTGGGCTCTGGGCAG Arborophila_brunneopectus TCAGGTAGCTGAGGCGATGCTGAGACTGACAGTTCTTGGGCTCTGAGCAG Gallus_gallus TCAGGTAGCTGAGGAGATGCTGAGTCTGCCAGTTCTTGGGCTCTGGGCAG Anas_platyrhynchos TCAAATAGCTAATGAGACTCCGAGTCCCCCAGTTTTTGG-CTCGGGGCAG Arborophila_ardens GATCCCACCTCCTGTCTCCTCTAGGGCGGAGCGCAGCAGGCAGGGCTCTG Chrysolophus_amherstiae --TCCCATCTCTTGCCTTCTCTAGGACAGAGCGCAGCAGGCAGGGCTCTG Lophophorus_lhuysii GATCCCATATCTGGCCTTCTGCAGGACAGAGCGCAGCGGACACGGCTGAG Meleagris_gallopavo GATCCCATCTCTTGCCTTCTCTAGGACAGAGCACAGC-----AGGCTCTG Phasianus_colchicus GATCCCATCTCTTGCCTTCTCT--------------------GGGCTCTG Pucrasia_macrolopha GATCCCATCTCTTGCCTTCTCTAGGACAGAGCACAGC-----AGGCTCTG Syrmaticus_reevesii GATCCCATCTCTTGCCTTCTCTAGGACAGAGCGCAGCAGGCAGGGCTCTG Tetraophasis_szechenyii GATCCCAGCTCTTGCCTTCTCTAGGACAGAGCGCAGCAGGCAGTGCTCTG Tragopan_temminckii GATCCCATCTCTTGCCTTCTCTAGGACGGAGCGCAGCAGGCAGGGCTCTG Arborophila_rufipectus GATCCCATCTTTTGCCTTCTCTAGGACAGAGCGCAGCAGGC-----TCTG Arborophila_brunneopectus GATCCCATCTCCTGTCTCCTCTAGGGCAGGGCGCAGCAGGCAGGGCTCTG Gallus_gallus GATCCCATCTCCTGCCTTCTCTAGGACAGAGCTCAGCAGGCAGGGCTCTG Anas_platyrhynchos GATCCTAATATATTCTCTAGCCAAGTGAAAGAACAGATTACAGCACACAG Arborophila_ardens CGGCTCCGTGTCTAACCCACTTCTCCCCCCCCTCACTTTCAGGTAATGGC Chrysolophus_amherstiae TGGCTCTGTGTCTAACCCACTTCTTCCTTTCCTCGCTTTCAGGTAATGGT Lophophorus_lhuysii AGGCTGAGTGTATAAAGGG-TTCTTTCACAC-TCGCTTTCAGGTAATGGT Meleagris_gallopavo TGGCTCTGTGTCTAACCCACTTCTTCCTCTCCTCCCTTCCAGGTAATGGT Phasianus_colchicus TGGCTCTGTGTCTAACCCACTTCTTCCTCTCCTCGCTTTCAGGTAATGGT Pucrasia_macrolopha TGGCTCTGTGTCTAACCCACTTCTTCCTCTCCTCGCTTTCAGGTAATGGT Syrmaticus_reevesii TGGCTCTGTGTCTAACCCACTTCTTCCTCTCCTCGCTTTCAGGTAATGGT Tetraophasis_szechenyii TGGCTCTGTATCTAACCCACTTCTTTCTCTCCTTGCTTTCAGGTAATGGT Tragopan_temminckii TGGCTCTGTGTCTAACCCACTTCTTCCTCTCCTCGCTTTCAGGTAATGGT Arborophila_rufipectus TGGCTCCGTGTCTAACCCACTTCTTCCTCTCCTCGCTTTCAGGTAATGGC Arborophila_brunneopectus TGGCTCCGTGTCTAACCCACTTCTCCCCCCCCTCACTTTCAGGTAATGGC Gallus_gallus TGGCTCTGTGTCTAACCCACTTCTTCCTCTCCTCGCTTTCAGGTAATGGT Anas_platyrhynchos -GGCTCCGTGTCTAATCCATTTTTCTCTCTCCT--CTTGGAGGTAATGGA Arborophila_ardens TGAGCGTTCAGAATAGTACCGGTCTCTGCTAGTTTAAACTTTGTGCTTCA Chrysolophus_amherstiae TGAGCATCCAGAATAGTACTGGTCTCTGCTGGCTTAAGTTTTGTGCTTCA Lophophorus_lhuysii TGAGCATCCAGAATAGTACTGGTCTCTGCTGGCTTAAGTTTTGTGCTTGA Meleagris_gallopavo TGAGCATCCAGAATAGTACTGGTCTCTGCTGGCTTAAGCTTTGTACTTCA Phasianus_colchicus TGAGCATCCAGAATAGTACTGGTCTCTGCTGGCTTAAGTTTTGTGCTTCA Pucrasia_macrolopha TGAGCATCCAGAATAGTACTGGTCTCTGTTGGCTGAAGCTTTTTACTTCA Syrmaticus_reevesii TGAGCATCCAGAATAGTACTGGTCTCTGCTGGCTTAAGTTTTGTGCTTTA Tetraophasis_szechenyii TGAGCATCCAGAATAGTACTGGTTTCTGCTGGCTTAAGTTTTGTGCTTGA Tragopan_temminckii TGAGCATCCAGAATAGTACTGGTCACTGCTGGCTTAAGTTTTGTGCTTCA Arborophila_rufipectus TGGGCGTTCAGAATAGTACTGGTCTCTACTAGTTTAAACTTTGTGCTTCA Arborophila_brunneopectus TGAGCGTTCAGAATAGTACTGGTCTCTACTAGTTTAAACTTTGTGCTTCA Gallus_gallus TGAGCATTCAGAATAGTACTGGTCTCTACTAACTTAAGCTTTGTTCATCA Anas_platyrhynchos TGAACAGTTTGAATAGTACTGAACTCTGCTGGCTTAAGCTTCATGCTTCA Arborophila_ardens GGAAAGGTCACTGGATTTCATCAGTGGCACGACTAGTCA-CCTGTCCTGA Chrysolophus_amherstiae GGAAAGTTCTCTGGATTTCACTAGTGGCAACACTAATCCTACTGTCCTAA Lophophorus_lhuysii GGAAAGTTCACTGGATTTCATTAGTGGCAACACTAATCCTGCTGTCTTAA Meleagris_gallopavo GGAAAGTTCACTAGATTTCATTAGTGGCAACACTAATCCTCCTGTCCTAA Phasianus_colchicus GGAAAGTTCTCTGGATTTCACTAGTGGCAACACTAATCCTACTGTCCTAA Pucrasia_macrolopha GGAAAGTTCACTGGATTTCATTAGTGGCAGCACTAATCCTACTGTCCTGA Syrmaticus_reevesii GGAAAGTTCGCTGGATTTCACTAGTGGCAACACTAATCCTACTGTCCTAA Tetraophasis_szechenyii GGAAAGTTCACTGGATTTCATTAGTGGCAACACTAATCCTGCTGTCCTAA Tragopan_temminckii GGAAAGTTGGTTGGATTTCATTAGTGGCAACRCTAATCCTGCTGTCCTAA Arborophila_rufipectus GGAAAGGTCACTGGATTTCATCAGTGGCAAGACTAGCCA-CCTGTCCTGA Arborophila_brunneopectus GGAAAGGTCACTGGATTTCATCAGTGGCAAGACTAGCCA-CCTGTCCTGA Gallus_gallus GGAAAGTTCACCAAATTTCATTAGTGGCAAGACTAGACA-GCTGTCCTAA Anas_platyrhynchos GGAAAGTTCTCTGGCCTCTTYTAGTGGCAAGACCAGAGA-CCTGTCCTAA Arborophila_ardens TGTAGT------------ACCCGTGAAGAAACTGTGCACAGTGTTCTGAT Chrysolophus_amherstiae TGTAGTACTTCCTAACATACCTATGAAGAACCTGTACATGGTGTTCTGAC Lophophorus_lhuysii TATAGTACTTCTTAACATACCTGTGAAGAACCTGTACGTGGTGTTCTCAC Meleagris_gallopavo TGCAGTACTTCTTAACATACCTGTGAAGAACCTGTGCATGATGTTCTGAC Phasianus_colchicus TTTAGTACTTCTTAACATACCTATGAAGAACCTGTACATGGTGTTCTGAC Pucrasia_macrolopha AGTAGTACTTCTTAACATACCTATGAAGAACCTGTACATGGTGTTCTGAC Syrmaticus_reevesii TGTAGTACTTCTTAACATACCTCTGAAGAACCTGTACAAGGTGTTCTGAC Tetraophasis_szechenyii CGTAGTACTTCTTAACGTACCTATGAAGAACCTGTACATGGTGTTCTCAC Tragopan_temminckii TGTAGTACTTCTTAACATACCTATGAAGAACCTGTACATGGTGTTCTTAC Arborophila_rufipectus TGTAGT------------ACCCGTGAAGAAACTGTGCACAGTGTTCTGAT Arborophila_brunneopectus TGTAGT------------ACCCATGAAGAAACTGTGCACAGTGTTCTGAT Gallus_gallus TGTAGTGCTTCTTAACATACCCATGAGAAACCTGTACACAGTGTTCTGAC Anas_platyrhynchos TGTAGTACTTTTTARYRTTCCCAAGAAGATCCAGTATAYTGTGTTCTGAG Arborophila_ardens AGTACTTGTATGCCAGAAGGTTCTAAAGCTGAGACAGAGCCCACAGAGGG Chrysolophus_amherstiae AGTACTTGTACGCCAGAAGGTTCTAAAGCTGGGATAGAACCCACAGAGGG Lophophorus_lhuysii AGTACTTGTATGCCAGAAGGTTCTAAAGCTGGGATAGAACTCACAGAGGG Meleagris_gallopavo AGTACTTGTATGCCAGAAGGTTCTAAAGCTGGGATAGAACCCACAGAGAG Phasianus_colchicus AGTACTTGTATGCCAGAAGGTTCTAAAGCTGGGATAGAACCCACAGAGGG Pucrasia_macrolopha AGTACTTGTATGCCAGAAGGTTCTAAAGCTGGGATAAAACCCACAGAGGG Syrmaticus_reevesii AGCACTTGTATGCCAGAAGGTTCTAAAGCTGGGATAGAACCCACAGAGGG Tetraophasis_szechenyii TGTACTTGTATGCCAGAAGGTTCTAAAGCTGGGATAGAACTCACAGAGGG Tragopan_temminckii AGTACTTGTATGCCAGAAGGTTCTAAAGCTGGGATAGAACTCACAGAGGG Arborophila_rufipectus AGTACTCGTATGCCAGAAGGTTCTAAAGCTGAGACAGAGCCCACAGAGGG Arborophila_brunneopectus AGTACTCGTATGCCAGAAGGTTCTAAAGCTGAGACAGAGCCCACAGAGGG Gallus_gallus AGTACTTGTATGCTAGAAGGTTCTAAAACTGGGATAGAACCCACAGAGGG Anas_platyrhynchos AGTACTTAAATGCTGGAAGGTTCTAAAGCTTGTATGAAGTCTACAGAGGG Arborophila_ardens AGAGAGGAATAACTGAAGTAATGGTTCTGCGGCTTAATGTTTCTGCTACT Chrysolophus_amherstiae AGAGAGGAATAATTGAAGTAATGTCTCTGTGGCTTAATGTTTCTAGTACT Lophophorus_lhuysii AGAGAGGAATAATTGAAGTAATGTCTCTGTGGCTTAATGTTTCTAGTACT Meleagris_gallopavo TGAGAGGAGTAATTGAAGCAATGTCTCTGTGACTTAATGTTTCTAGTACT Phasianus_colchicus AGAGAGGAATAATTGAAGTAATGTCTCTGTGACTTAATGTTTCTAGTACT Pucrasia_macrolopha AGAAAGGAATAATTGAAGTAATGTCTCTGTGGCTTAATGTTTCTAGTACT Syrmaticus_reevesii AGAGAGGAATAATTGGAGTAATATCTCTGTGGCTTAATGTTTCTAGTACT Tetraophasis_szechenyii GGAGAGGAATAATTGAAGTGATGTCTCTGTGGCTTAATGTTTCTAGTACT Tragopan_temminckii AGAGAGGAATAATTGAAGTAATGTCTCTGTGGCTTAATGTTTCTAGTACT Arborophila_rufipectus AGAGAGGAATAACTGAAGTAATGATTCTTTGGCTTAATGTTTCTGCTACT Arborophila_brunneopectus AGAGAGGAATAACTGAAGTAATGATTCTTTGGCTTAATGTTTCTGCTACT Gallus_gallus AGAGAGGAATAACTGAAGTAATGTCTCTGTAGCTTAATGTTTCTAGTACT Anas_platyrhynchos GGGGAAGGATGAATGCAGCAATGGCTATGTGACTTAATGCTTCTGGTATA Arborophila_ardens TACTTTAATTTCCCC-AGTGATTGGGAAAGTCACTGTGAAAGGACAGCCT Chrysolophus_amherstiae TACTTTAATCCCCCCCAGTGACAGGGAAAGCCYCTGTGAAAGGACAGYCT Lophophorus_lhuysii TACTTAAATCCCCCCCAGTGATAGGGAAAGTCTCTGTGAAAGGACAGCCT Meleagris_gallopavo TACTTTAGTCCCCCCCAGTGATAGGAAAAGTCTCTGTGAGAGGACAGCCT Phasianus_colchicus TACTTTAATCCCCTCTAGTGATAGGGAAAGCCTCTGTGARAGGGCAGCCT Pucrasia_macrolopha TACTTTAGTCCCCCCCAGTGATAGGGAAAGTCTCTGTGAAAGGACAGCCT Syrmaticus_reevesii TACTTTAATCCCCTCTAGAGATAGGGAAAGCCTCTGTGAAAGGGCAGCCT Tetraophasis_szechenyii TACTTTAATCCCCCCCAGTGATAGGGAAAGTCTCTGTGAAAGGACAGCCT Tragopan_temminckii TACTTTAATCCCCCCCAGTGATAGGGAAAGTCTCTGTGAAAGGACAGCCT Arborophila_rufipectus TACTTTAATTTCCCC-AGTGATTGGGAAAGTCACTGTGAAAGGACAGCCT Arborophila_brunneopectus TACTTTAATTTCCCC-AGTGATTGGGAAAGTCACTGTGAAAGGACAGCCT Gallus_gallus TACTTGAATCCCCCC-AGTGATAGGGGAAGTCTCTGTGAAAGGACAGCAT Anas_platyrhynchos AATTTTAATCCCTCC-AATGACTGGAAAAGTCTCTTTGAAATGACAACCT Arborophila_ardens CCAGCAGGGTCCGTACCTGGAAATAGAGTAAAAGAGAGTGACTGTGAGCT Chrysolophus_amherstiae CCAGCAGGGGCCGTACCTGGAAATAGGGTAAAAAAGAGTGACTAAGAGCA Lophophorus_lhuysii CCAGCAGGGGCCATACCTGGAAAAAGGGTAAAAAAGAGTGACTAAGAGCA Meleagris_gallopavo CTAGCAGGGGCCATACCTGGAAATAGGGTAAAAAAGAGTGACTAAGAGAA Phasianus_colchicus CCAGCAGGGGCCATACCTGGAAATAGGGTAAAAAAGAGTGACTAAGAGCA Pucrasia_macrolopha CTAGCAGGGGCCATACCTGAAAATAGGGTAAAAAAGAGTGACTGAGAGCA Syrmaticus_reevesii CCAGCAGAGGCCATACCTGGAAATAGGGTAAAAAAGAGTGACTAAGAGCA Tetraophasis_szechenyii CCAGCAGGGGCCATACCTGGAAATAGGGTAAAAAAGAGTGACTAAGAGCA Tragopan_temminckii CCAACAGGGGCCATACCTGGAAATAGGGTAAAAAAGAGTGACTAAGAGCA Arborophila_rufipectus CCAGCAGGGTCCATACCTGGAAATAGAGTAAAAGAGAGTGACTGTGAGCT Arborophila_brunneopectus CCAGCAGGGTCCGTACCTGGAAATGGAGTAAAAGAGAGTGACTGTGAGCT Gallus_gallus CCAACAGGGCCCATACCTGGAAGTAGGGTAAAAAAGAATGACTAAGAGCA Anas_platyrhynchos CTAACTGAGGCTGCATCTGTAAACRGGATATTGAAGATTCACTAAGGCTG Arborophila_ardens AAGAGCATTTAGCATGCTAAATTCAGGTGAGAAGAGACTGATTGCAAGGA Chrysolophus_amherstiae AAGAGTATTTAGCATGCTAAATTCAGGTGAGAGAAAACTGGTTGCAAGGA Lophophorus_lhuysii AAGAGTATTTAGCATGCTAAATTCAGATGAGAGGAAACTGGTTGCAAGGA Meleagris_gallopavo AAGAGTATTTAGCATGCTAAAT--AGATGAGAGGAAACTGGTTGCAAGGA Phasianus_colchicus AAGAGTATTTAGCGTGCTAAATTCAGGTGAGAGAAAACTGGTTGCAAGGA Pucrasia_macrolopha AAGAGTATTTAGCATGCTAAATTCAGATGAGAGGAAACTGGTTGCAAGGA Syrmaticus_reevesii AAGAGTATTTAGCATGCTAAATTCAGATGAGAGAAAACTGGTTGCAAGGA Tetraophasis_szechenyii AAGAGTATTTAGCATGCTAAATTCAGATGAGAGGAAACTGGTTGCAAGGA Tragopan_temminckii AAGAATATTTAGCACGCTAAACTCAGATGAGAGGAAACTGGTTGCAAGGA Arborophila_rufipectus AAGAGCATTTAGCATGTTAAATTCAGATGAGAAGAGACTGATTGCAAGGA Arborophila_brunneopectus AAGAGCATTTAGCATGCTAAATTCAGATGAGAAGAGACTGATTGCAAGGA Gallus_gallus AAGAGTTTTTAGCATGCTAAATTCAGATCAGAGGAAACTGAATGCAAGGA Anas_platyrhynchos GAGATTGTTTAGCATAGTAAATTCAGATGAGAGGAACTTGCTTGCAAGAA Arborophila_ardens CAAGAATGTCTTAATTCTGTAGGACTGTCCTCTGAACTTAAGTCTACTAT Chrysolophus_amherstiae CAAGAATGTCTTAATTCTGTAGGATTGTCCTTTGAACTTAAGTCTAGTAT Lophophorus_lhuysii CAAGAATGTCTTAATTCTGTAGGACTGTCCTCTGAACTTAAGTCTAGTAT Meleagris_gallopavo CAAGGATGTCTTAATTCTATAGGACTGTCCTCTGAACTTGAGTCTAGTAT Phasianus_colchicus CAAGAATGTCTTAATTCTGTAGGACTGTCCTTTGAACTTAAGTCTAGTAT Pucrasia_macrolopha CAAGAATGTCTTAATTCTATAGGACTGTCCTCTGAACTTAAGTCTAGTAT Syrmaticus_reevesii CAAGAATGTCTTAATTCTATAGGACTGTCCTTTGAACTTAAGTCTAGTAT Tetraophasis_szechenyii CAAGAATGTCTTAATTCTGTAGGACTGTCCTCTGAACTTAAGTCTAGTAT Tragopan_temminckii CAAGGATGTCTTAATTCTGTAGGACTGTCCTCTGAACTTAAGTCTAGTAT Arborophila_rufipectus CAAGAATGTCTTAATTCTGTAGGACTGTCCTCTGAACTTAAGTCTAGTAT Arborophila_brunneopectus CAAGAATGTCTTAATTCTGTAGGACTGTCCTCTGAACTTAAGTCTAGTAT Gallus_gallus CAAGAGAGTCTTAATTTTGTAGGACTGTCCTCTGAACTTAAGACTAGTAT Anas_platyrhynchos CAAGAATGACTTAATTCTGTAGGACAGTCCTATGATGTTAAA-CTAGTTC Arborophila_ardens CAGTAGCAATAC-----GTATTTAATAGGCTATCATTGCACATCTTCTGT Chrysolophus_amherstiae CAGTAGCAATACTGATATTATTTAATAGGCTATTATTGCACGTCTTCTGT Lophophorus_lhuysii CAGTAGCAATAC-----ATATTTAATAGGCTATTATTGCACGTCTTCTGC Meleagris_gallopavo CAGTAGCAATAC-----ATATTTAATGGGCTATTATTGCACTTCTTCTGT Phasianus_colchicus CAGTAGCAATACTGATATTATTTAATAGGCTATTATTGCACGTCTTCTGT Pucrasia_macrolopha CAGTAGCAATAC-----ATATGTAATAGGCTATTATTGCACGTCTTTTGT Syrmaticus_reevesii CAGTAGCAATATTGATATTATTTAATAGGCTATTATTGCACTTCTTCTGT Tetraophasis_szechenyii CAGTAGCAATAC-----ATATTTAATAGGCTACTATTGCACGTCTTCTGT Tragopan_temminckii CAGTAGCAATAC-----ATATTTAATAGGCTATTATTGCACGTCTTCTGT Arborophila_rufipectus CAGTAGCAATAC-----GTATTTAATAGGCTATTATTGCACATCTTCTGT Arborophila_brunneopectus CAGTAGCAATAC-----GTATTTAATAGGCTATTATTGCACATCTTCTGT Gallus_gallus CAATAC-----------ATATTTAATAGGCTGTTATTGCACGTCTTCTGT Anas_platyrhynchos CAGTAGCAATAC-----AGATTTAATAGGCTACTATTGCACATCTTCTGT Arborophila_ardens CAAAACATCTCCAATGCAGTATTCAGCCATACTGCTTCTGGCAGTTTTTC Chrysolophus_amherstiae CAAAACATCTCCAATGCAGTGCTCAGCTATATTGCTTCTGACAATTTTTC Lophophorus_lhuysii CAAAACATTTCCAATGCAGCGTTCAGCCATACTGCTTCTGACAATTTTTC Meleagris_gallopavo CAAAACATCTCCAGTGCAGTGTTCAGCCATACTGCTTCTGACAATTTTTC Phasianus_colchicus CAAAACATCTCCAATGCAGTGTTCAGCTATACTGCTTCTGACAATTTTTC Pucrasia_macrolopha CAAAACATCTCCAATGCAGTGTTCAGCCATACTGCTTCTGACAATTTTTC Syrmaticus_reevesii CAAAACATCTCCAATGCAGTGTTCAGCTATACTGCTTCTGACAATTTTTC Tetraophasis_szechenyii CAAAACATCTCCAATGCAGTGTTCAGCCATACTGCTTCTGTCAATTTTTC Tragopan_temminckii CAAAACATCTCCAATGCAGTGCTCAGCCATACTGCTTCTGACAATTTTTC Arborophila_rufipectus CAAAACATCCCCAATGCAGTATTCAGCCATACTGCTTCTGGCAGTTTTTC Arborophila_brunneopectus CAAAACATCCCCAATGCAGTATTCAGCCATACTGCTTCTGGCAGTTTTTC Gallus_gallus CAGAACATCTCCATTGCAGTGTTCAGCCATACTGCTTCTGACAATTTTTA Anas_platyrhynchos TAAAATATCTCAAATGCAGTGCTGAACTGTACTG---CTGACT-TTTTTC Arborophila_ardens TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCACTTCTAACTTCAGCT Chrysolophus_amherstiae TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCGGCT Lophophorus_lhuysii TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCAGCT Meleagris_gallopavo TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCAGCT Phasianus_colchicus TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCGGCT Pucrasia_macrolopha TGGGTTAGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCAGCT Syrmaticus_reevesii TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCGGCT Tetraophasis_szechenyii TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCAGCT Tragopan_temminckii TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCAGCT Arborophila_rufipectus TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCACTTCTAACTTCAGCT Arborophila_brunneopectus TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCACTTCTAACTTCAGCT Gallus_gallus TGGGTTGGAAAAACATAATGTTGCCATAGTAAGCATTTCTAACTTCAGCT Anas_platyrhynchos TGGGTTGGCAAAACATAATGTTGCTGCAGTAAGCATTTCTAACTTCAGCT Arborophila_ardens TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Chrysolophus_amherstiae TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAGAACTGAAAT Lophophorus_lhuysii TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Meleagris_gallopavo TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Phasianus_colchicus TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Pucrasia_macrolopha TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Syrmaticus_reevesii TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Tetraophasis_szechenyii TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Tragopan_temminckii TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Arborophila_rufipectus TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Arborophila_brunneopectus TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Gallus_gallus TTCTGGAGGAACTCTTGCCAAGCCACAATAGCAGAACAGAAAACTGAAAT Anas_platyrhynchos TTCTGGAGGAAATCTTGCCAAGCCACAATAGCAGAACAGGAAACTAAAGT Arborophila_ardens GCGTCTCTATTTCTGGCAGGTGAGTTATTCTGATGGCAGAAGTTAGAAGC Chrysolophus_amherstiae GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGGTAGAGGTTAGAATC Lophophorus_lhuysii GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGGTAGAGGTTAGAAGC Meleagris_gallopavo GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGGTAGAGGTTAGAATC Phasianus_colchicus GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGGTAGAGGTTAGAATC Pucrasia_macrolopha GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGTTAGAGGTTAGAATC Syrmaticus_reevesii GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGGTAGAGGTTAGAATC Tetraophasis_szechenyii GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGGYAGAGGTTAGAAGC Tragopan_temminckii GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGGTAGAGGTTCGAAGC Arborophila_rufipectus GCGTCTCTATTTCTGGCAGGTGAGTTATTCTGATGGCAGAAGTTAGAAGC Arborophila_brunneopectus GCGTCTCTATTTCTGGCAGGTGAGTTATTCTGATGGCAGAAGTTAGAAGC Gallus_gallus GCATCTCTATTTCTGGCAGGTGAGTTATTCTAAGGATAGAGGTTAGAAGC Anas_platyrhynchos GCATCTCTATTTCTGGCAGGTAAGTAACTCCAAAGGCAAAGGTTAGAAGC Arborophila_ardens CATCTGGATTGCCTTAGTTTAGTTGACTTGCTTAGGTCACTCGCACTTCA Chrysolophus_amherstiae CATCTAGATTGCCTTAGCTTAGTTGACTT-------------GCACTTCA Lophophorus_lhuysii CATCTAGATTGCCTTAGCTTAGTTGACTT-------------GCACTTCA Meleagris_gallopavo CATCTAGATTGCCTTAGCTTAGTTGACTT-------------GCACTTCA Phasianus_colchicus CATCTAGATTGCCTTAGCTTAGTTGACTT-------------GCACTTCA Pucrasia_macrolopha CATCTGGATTGCCTTAGCTTAATTGACTT-------------GCACTTTA Syrmaticus_reevesii CAACTAGATTGCCTTAGCTTAGTTGACTT-------------GCACTTCA Tetraophasis_szechenyii CATCCAGATTGCCTTAGCTTAGTTGACTT-------------GCACTTCA Tragopan_temminckii CATCTAGATTGCCTTAGCTTAGTTGACTT-------------GCATTTCA Arborophila_rufipectus CATCTGGATTGCCTTTGTTTAGTTGACTTGCTTAGGTCACTCGCACTTCA Arborophila_brunneopectus CATCTGGATTGCCTTTGTTTAGTTGACTTGCTTAGGTCACTCGCACTTCA Gallus_gallus CATCTGGATTGCTGTAGCTTAGTTGACTTCCTTAGGTCACTTGCACTTCA Anas_platyrhynchos CATCAGGATTGCCTTAGCTTAGTTGACTTGCTTAGGTCACCTGCATTTCA Arborophila_ardens GCACTTGACATTCAAGAGTT-AAATGCTTCAATACTAACC-----TGTC- Chrysolophus_amherstiae GCACTTGACATTTAAGGGCTAAAATGCTTCAATACTAACCTAAGCTGTCT Lophophorus_lhuysii GCACTTGACATTCAAGAGCTAAAATGCTTCAGTACTAACCTAAGCTGTCT Meleagris_gallopavo GCACTTGACATTCAAAAGTTAAAATGCTTCAMTGCTAACCTAAGCTCTCT Phasianus_colchicus GCACTTGACATTCAAGAGCTAAAATGCTTCAATACTAACCTAAGCTGTCT Pucrasia_macrolopha GTACTTGACATTCAAGAGCTAAAATGCTTCAATACTAATCTAAGCTGTCT Syrmaticus_reevesii GCACTTTACATTCAAGAGCTAAAATGCTTCAATACTAACCTAAGCTGTCT Tetraophasis_szechenyii GCACTTGACATTCAAGAGCTGAAATGCTCCAATACTAACCTAAGCTGTCT Tragopan_temminckii GCACTTGACATTCAAGAGCTAAAATGCTTCAATACTAACCTGAGCTGTCT Arborophila_rufipectus GCACTTGACATTCAAGAGTT-AAATGCTTCAATACTAACC-----TGTCT Arborophila_brunneopectus GCACTTGACATTCAAGAGTT-AAATGCTTCAATACTAACC-----TGTCT Gallus_gallus GCACTTGACGTCCAAGAGCTTAAAAGCTTCAATGCTAACCTAAGTTGTCT Anas_platyrhynchos GCACTTGACATTCAAGAGCTAAAGTGCTGCACTACTAGCCTTAGTTTTCT Arborophila_ardens ---GTTCACTTCAAATGTTCTGTCTAATATATTCTCCTGTACACTATCGA Chrysolophus_amherstiae CTAGTTTACTTCAT-TGTTCTGTCTAATATATTCTCCTGTATACCATCAA Lophophorus_lhuysii ATAGTTCACTTCAT-TGTTCTGTCTAATGTATTCTCCTGTATACCATCGA Meleagris_gallopavo GTAGTTCACTTCAT-TGTTCTGTCTAATATATTCTCCTGTATAGCATTGA Phasianus_colchicus CTAGTTTACTTCAT-TGTTCTGTCTAATATATTCTCCTGTATACCATCAA Pucrasia_macrolopha GTAGTTCACTTCAT-TGTTCTGTCTAATATATTCTCCTGTATACCATTGA Syrmaticus_reevesii CTAGTTCACTTCAT-TGTTCTGTCTAATATATTCTCCGGTATACCATCAA Tetraophasis_szechenyii ACAGTTCACTTCAT-TGTTCTGTCTAATATATTCTCCTGTATACCATCGA Tragopan_temminckii GTAGTTCACTTCAT-TGTTCTGTCTAATATATTCTCCTGTATACCGTCGA Arborophila_rufipectus GTAGTTCACTTCAAATGTTCTGTCTAATATATTCTCMTGTAAACCATCGA Arborophila_brunneopectus GTAGTTCACTTCAAATGTTCTGTCTGATATATTCTCCTGTAAACCATCGA Gallus_gallus GTAGTTCACTTCAT-TGTTCTGTCTAATATATTTTCCGGTATACCATCAA Anas_platyrhynchos GCCGTTCACTTGCT-TGTTCTGTGTAATACATTCTCCTGTATCTGATCAA Arborophila_ardens GGAGCATCTGCCATGCTTTTGCAAC-ATAGACTTGA-CTTGCTGTGGGTA Chrysolophus_amherstiae GGAGCATCTGCCATACTTTTCCAAC-ACAGACTTCTTCATGCTGTGGGCA Lophophorus_lhuysii GGAGCATGTGCCATACTTTTCCAAC-ACAGACTTGA-CTTGCTGTGGGCA Meleagris_gallopavo GGAGCATCTGCCATACTTTTCCAAC-ACAGACTYGA-CTAGCTGTGGGCA Phasianus_colchicus GGAGCATCTGCCATACTTTTCTAAC-ACAGACTT------GCTGTGGGCA Pucrasia_macrolopha GGAGCATCTGCCATACTTTTCCAAC-ACAAACTTGA-CTTGCTGTGGGCA Syrmaticus_reevesii GGAGGATCTGCCATACTTTTCCAAC-ACAGACTTGA-CTTGCTATGGGGA Tetraophasis_szechenyii GGAGCATCTGCCATACTTTTCCAAC-ACAGACTTGA-CTTGCTGTGGGCA Tragopan_temminckii GGAGCATCTGCCATACTTTTCCAAC-ACAGACTTGA-CTTGCTGTGG-CA Arborophila_rufipectus GGAGCATCTGCCATGCTTTTGCAAC-ATAGACTTGA-CTTGCTGTGGGCA Arborophila_brunneopectus GGAGCATCTGCCATGCTTTTGCAAC-ATAGACTTGA-CTTGCTGTGGGCA Gallus_gallus GGAGCATCTGTCATACTTTTTCAAC-ACAGACTTGA-CTTGCTGTGGGCG Anas_platyrhynchos GGAGCATCTGCCATACTTTTCCAACCAMGGGCTTGA-CTTGCTGTGGGCA Arborophila_ardens CCAACTTCTTGCTAGAAGATCTTAGGTTTAGGTTTCAT-AAGAATCCCTA Chrysolophus_amherstiae CTGACTTCTTTCTAGAAGATCTTTGGTTTAGGTTTGATCTAAAATCTCCA Lophophorus_lhuysii CTGACTTCTTTCTAGAAGATCTTTGGTTTAGGTTTGAT-TAAAATCTCCA Meleagris_gallopavo CTGACTTCTTTCTAGAAGATCTTTGGTTTAGGTTTGAT-TAAAATCTCCA Phasianus_colchicus CTGACTTCTTTCTAGAAGGTCTTTGGTTTAGGTTTGATCTAAAATCTCCA Pucrasia_macrolopha CTGACTTCTTTCTAGAAGATCTTTGGTTTAGGTTTGAT-TAAAATCTCCA Syrmaticus_reevesii CTGATTTCTTTCTAGAAGATCTTTGGTTTAGGTTTGATCTAAAATCTCCA Tetraophasis_szechenyii CTGACTTCTTTCTAGAAGATCTTTGGTTTAGGTTTGAT-TAAAATCTCCA Tragopan_temminckii ATGACTTCTTTCTAGAAGATCTTTGGTTTAAGTTTGAT-TAAAATCTCCA Arborophila_rufipectus CCAACTTCTTGCTAGAAGATCTTAGGTTTAGGTTTCAT-AAGAATCCCTA Arborophila_brunneopectus CCAACTTCTTGCTAGAAGATCTTAGGTTTAGGTTTCAT-AAGAATCCCTA Gallus_gallus CTGACTTCTTGCTAGAAGATCTTTGTTTTAGGTTTGAT-TAAAATCTCTA Anas_platyrhynchos CTGACTTCTAGCTAGAACATTATTGGCTTGGGTTTGA---AGATTCCCCA Arborophila_ardens CCCTGAAAGATTAAGAGTAAATTCTTCAGTGTATAGCTGAACTTAACACC Chrysolophus_amherstiae CCTTGAAAGATTAAGAGTAAATTCTTCAGTGTGTAGCTGAACTTAACACC Lophophorus_lhuysii CCCTGAAAGATTAGGAGTAAATTCTTCAGCGTATAGCTGAACTTAACACC Meleagris_gallopavo CCCTGAAAGATTAAGAGTATACCCTTCAGTGTATAGCTGAACTTAACAAC Phasianus_colchicus CCCTGAAAGATTAAGAGTAAATTCTTCAGTGTGTAGATGAACTTAACACC Pucrasia_macrolopha CCCTGAAAGACTGAG--TAAATTCTTCTGTGTATAGCTGAACTTAATAGC Syrmaticus_reevesii CCCTGAAAGATTAAGGGTAAATTCTTCAGTGTGTAGCTGAACTTAACACC Tetraophasis_szechenyii CCCTGGAAGATTAAGAGTAAATTCTTCAGTGTATAGCTGAGCTTAACACC Tragopan_temminckii CCCTGAAAGATTAAGAGTAAGTTCTTCAGTGTATAGCTGAACTTAACACC Arborophila_rufipectus CACTGAAAGATTAAGAGCAAATTCTTCAGTGTATAGCTGAACTTAACACC Arborophila_brunneopectus CACTGAAAGATTAAGAGTAAATTCTTCAGTGTATAGCTGAACTTAACACC Gallus_gallus CCCTGAAAGATTAAGAATAAATTCTTCAGTGTGTAGCTGAAATTAACACC Anas_platyrhynchos CCCTGAAGGGTTAAGAATAGATGCCTCAGTACATAGCTGAACTTAACATC Arborophila_ardens TGCTTTGGATTTTTGTTTGTTTTTGTTTTTTGGGTGGTGGTTGTTTTGT- Chrysolophus_amherstiae TGCTTTGG--TGGTGGTGGTG---GTTGTT----------TTCTC----- Lophophorus_lhuysii TGCTTTGG--TTTTGGTTGTTGTTGTTGTT-------TTTTTCTT----- Meleagris_gallopavo TGCTTTGG--TGGTGGTGGTGGTTGTTGTT----------TTCTC----- Phasianus_colchicus TGCTGTGG--TGGTGGTGGTG---GTTGTT----------TTCTC----- Pucrasia_macrolopha TGCTTTGT--TTTTTGTTGT---TGTTGTT----------TTGTC----- Syrmaticus_reevesii TGCTTTGG--TGGTGGTGGTG---GTTGTT----------TTCTC----- Tetraophasis_szechenyii TGCTTTAG--TTTTGGTGGTTGTTGTTGTTGT-----TTTTTCTC----- Tragopan_temminckii TGCTTTGG--TTTTGGTTGTTGTTGTTGTT---------TTTCTT----- Arborophila_rufipectus TGCTTTGGATTTTTGTTTGTTTTTGTTTTTTGGGTGGTTGTTGTTACATA Arborophila_brunneopectus TGCTTGGGATTTTTGTTTGTTTTTGTTTTTTGGGTGGTTGTTGTTACATA Gallus_gallus TGCTTTGG--TGGTGGTGGTGGTTTTTTTT----------TTCTC----- Anas_platyrhynchos TGGTTTTTGTCTAACACTATT-CAGCCGTCAAAAATTAAACATTTCTCTT Arborophila_ardens -CTAGCACTATTCAGCTTTTACAAATTAAATGTTACTTCTCTGTATCTGT Chrysolophus_amherstiae --TAACACTACTCAGCTTTCACAAATTAAATGTTACTTCTCCGTATC-GT Lophophorus_lhuysii --TAACACTGTTCAGCTTCCACAAATTAAATGTTACTTCTCTGTATC-AT Meleagris_gallopavo --TAACACTATTCAGCTTTCACAAATTAAATGTTACTTCTCTGTATC-AT Phasianus_colchicus --TAACRCTACTCAGCTTTAACAAATTAAATGTTACTTCTCCGTATC-GT Pucrasia_macrolopha --TAAC-CAATTCAGTTTTCACAAATTAAATGTTACTTTTCTGTATC-AT Syrmaticus_reevesii --TAACACTACTCAGCTTTCACAAATTAAATGTTACTTCTCCATATC-GT Tetraophasis_szechenyii --TAACACTATTCAGCTTCCACAAATTAGATGTTACTTCTCTGTATC-AT Tragopan_temminckii --TAACACTATCCAGCTTTCACAAATTG--TGTTACTTCTCTGTATC-AT Arborophila_rufipectus CCTAGCATGATTCAGCTTTTACAAATTAAATGTTACTTCTCTGTATCTGT Arborophila_brunneopectus CCTAGCATGATTCAGCTTTTACAAATTAAATGTTACTTCTCTGTATCTGT Gallus_gallus --TAACACAATTCAGCTTTCACAAGTAAAATGTTACTTCTCTGTGTC-AT Anas_platyrhynchos CTGTATATTGTGCCTCTGCAGGGAATTCTACGTACCAGTGATACAATCAG Arborophila_ardens ATCCTTCTACAGGTGAGTAACTGTGGCTGTTGGTTCTAATCCCAC----- Chrysolophus_amherstiae GTACCTCTACAGGTGAGTAACAGTGGCTGTTGGTTCCAATCCCACACCAG Lophophorus_lhuysii GTGCCTCTACAGGTGAGTAACTGTGGCTGTTGGTTCCAATCCCACACCAG Meleagris_gallopavo GTGCCTCTACAGGTGAGTAACTGTGGCTGTTGGTACCAATCCCACACCAG Phasianus_colchicus GTGCCTCTACAGGTGAGTAACTGTGGCTGTTGGTTCCAATCCCACACCAG Pucrasia_macrolopha GTGCCTCTACAGGTGAGTAACTGTAGATGCTGGTTTCAGTCTCACATCAG Syrmaticus_reevesii GTGCCTCTACAGGTGAGTAACTGTGGCTGTTGGTTCCAATCCCACACCAG Tetraophasis_szechenyii GTGCCTCTACAGGTGAGTAACTGTGGCTGTTGGTTCCGATCCCACACCAG Tragopan_temminckii GTGCCTCTACAGGTGAGTAACTGTGGCTCTTGGTTCCARTCCCACACCAG Arborophila_rufipectus ATCCCTCTTCAGCTGAGTAACTGTGGCTGTTGGTTCTAATCCCAC----- Arborophila_brunneopectus ATCCCTCTACAGGTGAGTAACTGTGGCTGTTGGTTCTAATCCCAC----- Gallus_gallus GTGCCTCTACAGGTGAGTAACTGTGGCTGTTGGTTCTAACCCTACACCGG Anas_platyrhynchos GAAGTTCCAGAGCCAGATAAATGGGGAGGG-GATGGTGAGCTGGCAAT-G Arborophila_ardens CTCTGTGTGCCCCTAACCTGGCATTACACACACTCAGTCTCACTGACTCA Chrysolophus_amherstiae CTCTGTGCGCCCCTAGCCTGGCAGTGCAGACATTCAGGCTCAGTGAGTTG Lophophorus_lhuysii CCCTGTGTGCCCCTAACCTGGCAGTGCAGACATCCAGGCTCAGTGAGTTG Meleagris_gallopavo CTCCGTGTGCCCCTAACCTGGCAGTGCAGGCATTCAGGCTCAGTGAGTTG Phasianus_colchicus CTCTGTGTGCCCCTCGCCTGGCAGTGCAGACATTCAGGCTCAGTGAGTCG Pucrasia_macrolopha CTCTGTGTGCCCCTAACCTGGCAATGCAGACATTCAGGCTCAGTGAATTG Syrmaticus_reevesii CTCTGTGCGCCCCTAGCCTGGCAGTGCAGACATTCAGGCTCAGTGAGTTG Tetraophasis_szechenyii TTCTGTGTGCCCCTAACCTGGCAGTGCAGACATTCAGGCTCAGTGAGTTG Tragopan_temminckii CTCTGTGCGCCYCTAACCTGGCAGTGCAGACATTCAGGCTCAGTGCGTTG Arborophila_rufipectus CTCTGTGT-CCCCTAACCTGGCATTACACACACTCARTCTCACTGACTCG Arborophila_brunneopectus CTCTGTGT-CCCCTAACCTGGCATTACACACACTCAATCTCACTGACTCG Gallus_gallus CTCTGTGCACCCCTAACCTGGCAGTGCAGGCGTTCAGGCTCAGYGACTCA Anas_platyrhynchos GAGTAAATGCATTTTGGCCAGCTCTGAAAGCCTGAGTGATTGGGAAAGTA Arborophila_ardens RTCCTTGTGCTAGCCTTTT--CTCTGTCCTGAGCTAACCAGGGTAAAACA Chrysolophus_amherstiae ATCCTTGTGCTGGTTTTTT--CTCACTGCTGAGCTAATCAAGATAAAAAA Lophophorus_lhuysii ATCCTTGTGCTAGTTTTTTTTTTCCCTGGTGAGGTAACCCGGGTAAAAAA Meleagris_gallopavo ATCCTTGTGCTGTTTTTTTTCCTCACTCCTGAGCTAATGAGGGTAAAAAA Phasianus_colchicus GTCCTTGTGCTGGTTTTTTT-CTCACTGCTGAGCTAATCAAGATATAAAA Pucrasia_macrolopha TTCCTTGTGCTAGTTTCTTTTCTCGCTCCTGAGCTAATCAGGGTGAAAAA Syrmaticus_reevesii ATCCTTGTTCTAGTTTTTTTTCTCACTGCTGAGCTAATCAGGATAAAAAA Tetraophasis_szechenyii ATCCTTGTGCTAGTTTTTTTTTTCTCTCATGACCTAACCAGGGTAAAAAA Tragopan_temminckii GTCCTTGTGCTAGTTTCTTTTCTCACTCCTGAGCTAACCAGGGTAAAAAA Arborophila_rufipectus ATCCTTGTGCTAGCCTTTT--CTCTGTCCTGAGCTACCCAGGGTAAAATA Arborophila_brunneopectus ATCCTTGTGCTAGCCTTTT--CTCTGTCCTGAGCTACCCAGGGTAAAATA Gallus_gallus ATCCTYGTGCCAGTTTTTT--CTCACTCCTGAGCTAACCAGGGTAAAAAA Anas_platyrhynchos GAGTCCTTACTCAACTCTTTTCTCTGACCTGAGCTAA-----GCAGAAAA Arborophila_ardens AAC-ACCACGCTTCTACGCCCAAGCTGGGTTTTGATATTTGTTTGGCTTA Chrysolophus_amherstiae AACCACCACACTTTTACACCTGGGCTGGACGTTGATATTTGTTTGGCTTA Lophophorus_lhuysii AACCACCACACTTTTACAGCTGAGCTGGACATTGATGCTTATTTGGCTTA Meleagris_gallopavo AACCACCACACTTTTCCACCTGAGCTGGACATTGATATTTGTTCGGCTTA Phasianus_colchicus AACCACCACACTTTTACACCTGAGCT------TGATATTTGTTTGGCTTA Pucrasia_macrolopha AACCACCATGCTTTTACACCTGAGCTGGACATTGATATTTGTTTGGCTTA Syrmaticus_reevesii AACCACCACACTTTTACACCTGAGCTGGACATTGATATTTGTTTGGCTTA Tetraophasis_szechenyii AACCACCACACTTTTACACATGAGCTGGACATTGATGCTTATTTGGCTTA Tragopan_temminckii AACCACCACACTTTTACACCTGAGCTGGACATTGATACTTGTTYGGCTTA Arborophila_rufipectus AAC-ACCACGCTTCTAAGCCCAAGCTGGGTTTTGATATTTGTTTGGCTTA Arborophila_brunneopectus AAC-ACCATGCTTCTAAGCCCAAGCTGGGTTTTGATATTTGTTTGGCTTA Gallus_gallus AAC-ACCACACTTTTCCATCTAAGCTGGGCATTGATATCTGTT-GGCTTA Anas_platyrhynchos AGC---CACAGCTCTGTGCCTGGACTGGGCATTGATAGCTGTCTGCATAA Arborophila_ardens TTTTTCCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAATCCG Chrysolophus_amherstiae TTTTCTCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAATCTG Lophophorus_lhuysii TTTCTTCTGCAGATACTTTGATCCTGCTACCGGCAAGTTCAGCAAATCTG Meleagris_gallopavo TTTTTTCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAGTCTG Phasianus_colchicus TTTTTTCTGCAGATACTTTGATCCTGCYACTGGCARGTTCAGCAAATCTG Pucrasia_macrolopha TTTTTTCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAATCTG Syrmaticus_reevesii TTTTCTCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAATCTG Tetraophasis_szechenyii TTTATTCTGCAGATACTTTGATCCTGCTACCGGCAAGTTCAGCAAATCTG Tragopan_temminckii TTTTTTCTGCAGATACTTTGATCCTGCTACCGGCAAGTTCAGCAAATCTG Arborophila_rufipectus TTTTTCCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAATCCG Arborophila_brunneopectus TTTTTCCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAATCCG Gallus_gallus TTTTTCCTGCAGATACTTTGATCCTGCTACTGGCAAGTTCAGCAAATCCG Anas_platyrhynchos TTCTTTCTCCAGGTATTTTGATCCTGCTACTGGCAAGTTCAGCAAGTCTG Arborophila_ardens CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Chrysolophus_amherstiae CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Lophophorus_lhuysii CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Meleagris_gallopavo CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Phasianus_colchicus CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Pucrasia_macrolopha CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Syrmaticus_reevesii CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Tetraophasis_szechenyii CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Tragopan_temminckii CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Arborophila_rufipectus CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Arborophila_brunneopectus CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Gallus_gallus CTACTGGCCCTGATGGAAAGAAACTGCCTAGGACCTTCTGCCAGCTCATC Anas_platyrhynchos CTACTGGCCCTGATGGAAAGAAACTGCCCAGGACGTTCTGCCAGCTCATC Arborophila_ardens CTCGATCCCATCTTCAAGGTGTGTTCCTCGCTGCTCTGCCCATGCTGATG Chrysolophus_amherstiae CTTGATCCCATCTTCAAGGTGTGTTCCTTGCCGAT--GTCCT-----AAG Lophophorus_lhuysii CTTGATCCCATCTTCAAGGTGTGTTCCTTGCTGAT--GCCCT-----AAG Meleagris_gallopavo CTTGATCCCATCTTCAAGGTGTGTTCCTTGCTGAT--GCCCT-----AAG Phasianus_colchicus CTTGATCCCATCTTCAAGGTGTGTTCCTTGCTGAT--GCCCT-----AAG Pucrasia_macrolopha CTTGATCCCATCTTCAAGGTGTGTTCCTTGCTGAT--GCCCT-----AAG Syrmaticus_reevesii CTTGATCCCATCTTCAAGGTGTGTTCCTTGCCGAT--GCCCT-----AAG Tetraophasis_szechenyii CTTGATCCCATCTTCAAGGTGTGTTCCTTGCTGAT--GCCCT-----AAG Tragopan_temminckii CTCGATCCCATCTTCAAGGTGTGCTCCTTGCTGAT--GCCCT-----AAG Arborophila_rufipectus CTGGATCCCATCTTCAAGGTGTGTTCCTCGCTGCTCTGCCCATGCTGATG Arborophila_brunneopectus CTGGATCCCATCTTCAAGGTGTGTTCTTCGCTGCTCTGCCCATGCTGATG Gallus_gallus CTCGATCCCATCTTCAAGGTGTGTTCCTTGCTGCTCTGCCCTTGTTGATG Anas_platyrhynchos CTTGACCCCATCTTCAAGGTGTGTTTCTTAGTGTGAAGCCCTTGCTKGTG Arborophila_ardens CCCTGAGCTCTTTTGTTCTGCTGCAGTGCATGATGATGGAAAATTTCTTC Chrysolophus_amherstiae CACAG------TTTGTTCTGCTGCAGTGCATGATGATGGAAAATTTCTTC Lophophorus_lhuysii CTCTG------TTTGTTCTGCTGCAGTGCATGATGATGGAAAATTTCTTC Meleagris_gallopavo CTCTG------GTTGTTCTGCTGCAGTGCATGATGATGGAAAATTTCTTC Phasianus_colchicus CTCAG------TTTGTTCTGCTGCAGTGCATGATGATGGAAAATTTCTTC Pucrasia_macrolopha CTCTG------TTTGTTCTGCTGCAGTGCGTGATGATGGAAAATTTCTTC Syrmaticus_reevesii CTCTG------TTTGTTCTGCTGCAGTGCATGATGATGGAAAATTTCTTC Tetraophasis_szechenyii CTCTG------TTTGTTGTGCTGCAGTGCATGATGATGGAAAATTTCTTC Tragopan_temminckii CTCTG------TTTGTTCTGCTGCAGTGCATGATGATGGAAAATTTCTTC Arborophila_rufipectus CCCTGAGCTCTTTTGTTCT---GCAGTGCATGATGATGGAAAATTTCTTC Arborophila_brunneopectus CCCTGAGCTCTTTTGTTCT---GCAGTGCATGATGATGGAAAATTTCTTC Gallus_gallus CTCT-------TTTGTTCTGCTGCAGTGCGTGATGATGGAAAATTTCTTC Anas_platyrhynchos CCTTCAGCTC-CTGGTTCTGCTGCAGTGCGTGATGATGGAAAATTTCTTC Arborophila_ardens ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACACGAGC Chrysolophus_amherstiae ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACACGAGC Lophophorus_lhuysii ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACACAAGC Meleagris_gallopavo ACTTTGACCTGACTTGTTCGATTGAAGAAATTTGAGTATCTGACACGAGC Phasianus_colchicus ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACATGAGC Pucrasia_macrolopha ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACACGAGC Syrmaticus_reevesii ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACATGAGC Tetraophasis_szechenyii ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACACGAGC Tragopan_temminckii ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACCCGAGC Arborophila_rufipectus ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACACAAGC Arborophila_brunneopectus ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACACAAGC Gallus_gallus ACTTTGACCTGACTTGTTTGATTGAAGAAATTTGAGTATCTGACGCGAGC Anas_platyrhynchos ACTTTGACCTGACGTGTTTGATTGAAGAAATTTGAGTATCTGACACAAGC Arborophila_ardens CCGGCTCGTTGCTGTGTGCAGCAGGGGAGCTGGTGGTAGATGTGGGAAGG Chrysolophus_amherstiae TGAGCTCGTTGTTCTGTGCAGCAGGGGG--TGGTGGTAGCTGTGGGGAGG Lophophorus_lhuysii TGAGCTCGTTGCTCTGTGCAGCGGGGGAGCTGGTGGTAGGTGTGGGAAGG Meleagris_gallopavo TGAGCTCGTTGTTCTGTGCAGCAGGGGAGCTGGTGGTAGGTGTGGGAAGG Phasianus_colchicus TGAGCTCGTYGTTGTGTGCAGCAGGGGGGCTGGTGGTAGCTGTGGGAAGG Pucrasia_macrolopha TGAGCTCGTTGTTCTGTGCAGCAGGGGAGCTGGTGGTAGGTGTGGGAAGG Syrmaticus_reevesii TGAGCTCGTTGTTCTGTGCAGCAGGGGGGCTGGTGGTAGCTGTGGGAAGG Tetraophasis_szechenyii TGAGCTCGTTGCTCTGTGCAGCAGGGGAGCTGGTGGTGGGTGTGGGAAGG Tragopan_temminckii TGAGCTCGTTGCTCTGTGCAGCAGGGGAGCTGGTGGTAGGTGTGGGAAGG Arborophila_rufipectus CCAGCTCGTTGCTGTGTGCAGTAGGGGAGCTGGTGGTAGATGTGGGAAGG Arborophila_brunneopectus CCAGCTCGTTGCTGTGTGCAGTAGGGGAGCTGGTGGTAGGTGTGGGAAGG Gallus_gallus TGAGCTCGTTGCTCTGTGCAGCAGGGGAGCTGCTAGTGGGTGTGGGAGGG Anas_platyrhynchos CTAGCTCGTTACTAGCAG--GCAGGGAAGCTGGTAGCAGATAAGGGGAGA Arborophila_ardens CAAGCGTGTGCCTGAGAGTCTGTGTGGATTCAGCTGGTGATGGGCATGGG Chrysolophus_amherstiae CAGGTGTGTGCCTGGGAGTCCATGTGGATTCAGC-----------ACAGG Lophophorus_lhuysii CAGGTGTGTGTCTGGGAGTCCACGTGGATTCAGCTGGTGATGAGCACGGG Meleagris_gallopavo CAGGTGTGTGTCTGGGAGTCCGTGTGGATTCAGC-----------ACAGG Phasianus_colchicus CAGGTSTGTGCCYGGGAGTCCATGTGGATTCAGC-----------ACAGG Pucrasia_macrolopha CAGGTGTGTGTCTGGGAGTCCATGTGGACTCAGC-----------ACAGG Syrmaticus_reevesii CAGGTGTGTGCCTGGGAGTCCATGTGGATTCAGC-----------ACAGG Tetraophasis_szechenyii CAGGTGTGTGTCTGGGAGTCCACGTGGATTCAGCTGGTGATGGGCACGGG Tragopan_temminckii CAGGTGTGTGTCTGGGAGTCCGCGTGGATTCAGCTGGTGATGGGCACGGG Arborophila_rufipectus CAAGCGTGTGCCTGAGAGTCCGTGTGGATTCAGCTGGTGATGGGCATGGG Arborophila_brunneopectus CAAGCGTGTGCCTGAGAGTCCGTGTGGATTCAGCTGGTGATGGGCATGGG Gallus_gallus CAAGTGTGTGTCTGGGGGTCCGTGTGGATTCAGCCAGTGATGGGCATGGG Anas_platyrhynchos CAAGTATGTGCCTAT--GTCTAYATGGATTTAATGGGGGAAGGTCAGAAC Arborophila_ardens TTCTCCTTAGGGATGCAGTGCTGCTGCTGCAGGCTGGGTCACAAGAGGCA Chrysolophus_amherstiae TTCTCCTTAGAGATGC--TGCTGCT--CTCAGGCTGGGTCCTGAAAGGCG Lophophorus_lhuysii TTCTCCTTAGAGATGC--TGCT-----CTCAGACTGGTTCCTGAAAGGCA Meleagris_gallopavo TTCTCCTTAGAGATGC--TGCTGCT--CTCAGACTGGATCCTGAAAGGCA Phasianus_colchicus TTCTCCTTAGAGATGC--TGCTGCT--CTCAGACTGGGTCCTGAAAGGCA Pucrasia_macrolopha TTCTCCTTAGAGATGC--TGCTGCT--CTCAGACTGGCTCCTGAAAGGCA Syrmaticus_reevesii CTCTCCTTAGAGATGC--TGCTGCT--CTCAGACTGGGTCCTGAAAGGCG Tetraophasis_szechenyii TTCTACTTAGAGATGC--TGCTGCT--CTCAGGCTGGTTCCTGAAAGGCA Tragopan_temminckii TTCTCCTTAGAGATGT--TGCTGCT--CTCAGACTGGTTCCTGAAAGGCA Arborophila_rufipectus TTCTCCTTAGGGATGCAGTGCTGCTGCTTCAGGCTGGGTCACAAGAGGCA Arborophila_brunneopectus TTCTCCTTAGGGATGCAGTGCTGCTGCTTCAGGCTGGGTCACAAGAGGCA Gallus_gallus TTCTCTTTAGAGATGCAGTGCTGCTGCTTCAGACTGGGTCATGAGAGGCA Anas_platyrhynchos TGTAGTGTAGGGGAGTTGTGCTGCTGCTTCAGAGTGGGTCATTAGAGGCA Arborophila_ardens TTCCTAACTGCTGCTGCTCTTGTAGGTGAGTTCTCCAAATTTTCCACAAT Chrysolophus_amherstiae TTCCTAACTGCTGCTGCTCTCACAGGTGAGTTCTCCAAATTTTCAAAAAT Lophophorus_lhuysii TTCCTAACTGCTGCTGCTCTCATAGGTGAGTTCTCCGAATTTTCAAAAAT Meleagris_gallopavo TTCCTAACTGCTGCTGCTCTCATAGGTGAGTTCTCCAAACTTTCAAAAAT Phasianus_colchicus TTCCTAACTGCTGCTGCTCTCGCAGGTGAGTTCTCCAAATTTTCAAAAAT Pucrasia_macrolopha TTCCTAACTTCTGCTGCTCTCATAGGTGAGTTCTCCAAATTTTCAAAAAT Syrmaticus_reevesii TTCCTAACTGCTGCTGCTCTCATAGGTGAGTTCTCCAAATTTTCAAAAAT Tetraophasis_szechenyii TTCCTAACTGCTGCTGCTCTCACAGGTGAGTTCTCCAAATTTTCAAAAAT Tragopan_temminckii TTCCTAACTGCTGCTGCTCTCGTAGGTGAGTTCTCCAAATTTTCAGAAAT Arborophila_rufipectus TTCCTAACTGCTGCTGCTCTTGTAGGTGAGTTCTCCAAATTTTCCACAAT Arborophila_brunneopectus TTCCTAACTGCTGCTGCTCTTGTAGGTGAGTTCTCCAAATTTTCCACAAT Gallus_gallus CTCCTAACTGCTGCTGCTCTYATAGGTGAGTTCTCCGAGTTTCCAAAAAT Anas_platyrhynchos TTCACGAATGTTGCTGCTGTTTTAGGTGAGTTTTCCAAATATTCAAAAAT Arborophila_ardens CTGACAGAAAATTCCCCAGGTTCCAGGAGAGG-CAGGGGAATGCCCAGCT Chrysolophus_amherstiae CTGACAGAAATTTCCCCAGGTTTCAGGAGAGGGCGTGAGAATGCCCAGCT Lophophorus_lhuysii CTGACAGAAATTTCCCCAGATATCAGGAGAGGGCGTGAGAATGCCCAGCT Meleagris_gallopavo CTGACAGAAATTTCCCTAGATTTCAGGAGAGGGCGTGAGGATGCCCAGCT Phasianus_colchicus CTGGCAGAAATTTCCCCAGGTTTCAGGAGAGGGCGTGAGAATGCCCAGCT Pucrasia_macrolopha CTGACAGAAGTTTCCCCAGATTTCAGGAGAGGGCGTGAGGATGCCCAGCT Syrmaticus_reevesii CTGACAGAAATTTCCCCAGGTTTCAGGAGAGGGCATGAGAATGCCCAGCT Tetraophasis_szechenyii CTGACAGAAATTTCCCCAGATTTCAGGAGAGGGCGTGAGAATGCCCAGCT Tragopan_temminckii CCGACAGAAATTTCCCCAGATTTCAGGAGAGGGCGTGAGAACGCCCAGCT Arborophila_rufipectus CTGACAGAAAATTCCCCAGGTTCCAGGAGAGG-CAGGGGAATGCCCAGCT Arborophila_brunneopectus CTGACAGAAAATTCCCCAGGTTCCAGGAGAGG-CAGGGGAATGCCCAGCT Gallus_gallus CTGACAGAAGTTTCCCCAGATTTTGGTGGGGGG----GGGATGCCCAGCT Anas_platyrhynchos CTGCCAGAAATTGCTCCAGATTTTAGGAAAGGGTGGGAGGATGCCCAGAT Arborophila_ardens GCTGCTGGAAAGCCGGGCAGCGCGTGCCAG-CCCTGCTGCTGCTGTGAGC Chrysolophus_amherstiae GCTC-TGGGGAGCCGGGCTGTGCGCGCCAG-CCCTGCTGCTGCTGC---- Lophophorus_lhuysii GCTCCTGGAGAGCCGGGCGGYGCGTGCCGGGCGCTGCTGCTGCTGTGGGC Meleagris_gallopavo GCTCCTGGAGAGCCGGGCGGTGCGTGCCAGGCCCTGCTGCTGCTGCGGGC Phasianus_colchicus GCTC-TGGGGAGCCGGGCTGTGCGCGCCAG-CCCTGCTGCTGCTGC---- Pucrasia_macrolopha GCTCCTGGAGAGCCGGGCGGTGCGTGCCAGGCCCTGCTGCGGCTGCAGGC Syrmaticus_reevesii GCTCCTGGGGAGCCGGGCTGTGCGCGCCAG-CCCTGCTGCTGCTGC---- Tetraophasis_szechenyii GCTCCTGGAGAGCCGGGCGGTGCGTGCCAGGCGCTGCTGCTGCTGCGGGC Tragopan_temminckii GCTCCTGGAGAGCCGGGCGGTGCGTGCCAGGCCCTGCTGCTGCTGCGGGC Arborophila_rufipectus GCTGCTGGAAAGCCGGGCAGCGCGCGCCAG-CCCTGCTGCTGCTGTGAGC Arborophila_brunneopectus GCTGCTGGAAAGCCGGGCAGCGCGCGCCAG-CCCTGCTGCTGCTGTGAGC Gallus_gallus GCTGCTG-AAAGCCGGGTGCTGCATGCCAGGCCCTGCTGCTGCTGCGGGC Anas_platyrhynchos GCTCTTGGAAAAACAYGTGGTATCTGGAAGGTTCTGCCGCTGGTGTGGGC Arborophila_ardens TGCGGCGCCGGCAGCGCTTC-GGGTGGGAGGTGGAGGAAGTGGCAGATGA Chrysolophus_amherstiae ---GG-GTCTGCAGTGCTACTGGGTGGGAGGTGAAGAAAGTGGCAAATGG Lophophorus_lhuysii TGCGGCGTCTGCAGTGCTACTGGGTGGGAGGTGAAGAAAGTGGCAAATGG Meleagris_gallopavo TGCGGCGTCTGCAGTGCTACTGGGTGGGAGGTGAAGAAAGTGGCAAATGG Phasianus_colchicus ---AGCATCTGCAGTGCTACTGGGTGGGAGGTGAAGAAAGTGGCAAATGG Pucrasia_macrolopha TGCGGTGTCTGCAGTGCTACTGGGTGGGAGGTGAAGGAAGTGGCACATGG Syrmaticus_reevesii ---GGCGTCTGCAGTGCTACCGGGTGGGAGGTGAAGAAAGTGGCAAATGG Tetraophasis_szechenyii TGCGGCCTCTGCAGTGCTACTGGGTGGGAGGTGAAGAAAGTGGCAAATGG Tragopan_temminckii TGCGGCGTCTGCAGTGCTGCTGGGTGGGAGGTGAAGAAAGCGGCAAATGG Arborophila_rufipectus TGCAGCGCCGGCAGCGCTTC-GGGTGGGAGGTGGAGGAAGTGGCAGATGA Arborophila_brunneopectus TGCGGCGCCGGCAGCGCTTC-GGGTGGGAGGTGGAGGAAGTGGCAGATGA Gallus_gallus TGCGGTGTCTGCAGCACTTCTGGGTGGGAAGTGAAGAAAGTGGCAAATGG Anas_platyrhynchos TGAGGCAGTTGCAGTGCTGGGAGGTGGGAGGTGAARAAAGTGACAAATTA Arborophila_ardens CACCTTTTTTT-AAGCCTTATTTTG-----------TTCCATCTCCTG-G Chrysolophus_amherstiae CGCTTTTTTTTTAAGCCTTATTTTGGTAGCCACCTGTTCCGTCTCCTGCG Lophophorus_lhuysii MACTTTTTTTT-AAGCCTTATTTTGGTAGCCACCTGTTCCATCTCCTGTG Meleagris_gallopavo CACTTTTTTTTTAAGCCTTATTTTGGTAGCCACCTGTTCCATCTCCTGTG Phasianus_colchicus TGCTTTTTTTTCAAGCCTTATTTTGGTAGCCACCTGTTCCGTCTCCTGCG Pucrasia_macrolopha CACTTTTTTTTAAAGACTTATTTTGGTAACCACCTGTTCCATCTCCTGCG Syrmaticus_reevesii CACTTTTTTTTTAAGCCTTATTTTGGTAGCCACCTGTTCCATCTCCTGCG Tetraophasis_szechenyii CACTTTTTTTTTAAGCCTTATTTTGGTAGCCACCTGTTCCATCTCCTGCG Tragopan_temminckii CACTTTTTTTT-AAGCCTTATTTTGGTAGCCACCTGTTCCATCTCCTGCG Arborophila_rufipectus CACCTTTTTTT-AAGCCTTATTTTG-----------TTCCATCTCCTG-G Arborophila_brunneopectus CACCTTTTTTT-AAGCCTTATTTTG-----------TTCCATCTCCTG-G Gallus_gallus CACTTCTTTTTTAAGCCTTGTTTTGGTAGCCACCTGTTCCATCTCCTGCA Anas_platyrhynchos CACTTTTWAAAAAAAAACTTTTTTGGTAGCCACCTGCTCAGCATCCTAAG Arborophila_ardens AGCAACAGCATAGCCACGAAAAGTAACCAACAGCAGATTGTGCAGCTGCT Chrysolophus_amherstiae AGCAACAGTGTAGCCATGAAAAGTAACCTACAGCAGACTGTGCAGCTGCT Lophophorus_lhuysii AGCAACAGTGTAGCCGTGAAAAGTAACCTACAGCAGATTGTGCAGCTGCT Meleagris_gallopavo AGCAACAGTGTAGCCATGAAAAGTAACCTACAGCAGATTGTGCAGCTGCT Phasianus_colchicus AGCAACAGCATAGCCATGAAAAGTAACCTACAGCAGACTGTGCAGCTGCT Pucrasia_macrolopha AGCAACAGTATAGCCATGAAAAGTAACCTACAGCAGATTGTGCAGCTGCT Syrmaticus_reevesii AGCAGCAGTGTAGCCATGAAAAGTAACCTACAGCAGACTGTGCAGCTGCT Tetraophasis_szechenyii AGCAACAGTGTAGCCATGAAAAGTAACCTACAGCAGATTGTGCAGCTGCT Tragopan_temminckii AGCAACAGTGTAGCCATGAAAAGTAACCTACAGCAGATTGTGCAGYTGCT Arborophila_rufipectus AGCAACAGCATAGCCACGAAAAGTAACCAACAGCAGATTGTGCAGCTGCT Arborophila_brunneopectus AGCAACAGCATAGCCACGAAAAGTAACCAACAGCAGATTGTGCAGCTGCT Gallus_gallus AACCACAGCGTAACCATGAAAAGTAACCAACAGCAGATTGTGCAGCTGCT Anas_platyrhynchos AACAACAACGTAGCAATGAAA-GTAACCAATAGCAGATT------TTGCT Arborophila_ardens GGATTTGCACATCCTTTTGGCTTGCTTTCTGACAGGAGAGGTGACAGTTT Chrysolophus_amherstiae GGATTTGCACATCCTTTTGGCTTGCTTTCTGACAGGAGAGCTGACAGTTT Lophophorus_lhuysii GGATTTGCACGTCCTTTTGGCTTGCTTTCTGACAGGAGAGCTGACAGTTT Meleagris_gallopavo GGATTTGCACATCCTTTTGGCTTGCTTTCTGACAGGAGAGCTGACAGTTT Phasianus_colchicus GGATTTGCACATCCTTTTGGCTTGCTTTTTGACAGGAGAGCTGACAGTTT Pucrasia_macrolopha GGATCTGCACATCCTTTTGGCTTGCTTTCTGATAGGAGAGCTGACAGTTT Syrmaticus_reevesii GGATTTGCACATCCTTTTGGCTTGCTTTCTGGCAGGAGAGCTGACAGTTT Tetraophasis_szechenyii GGATTTGCACATCCTTTTGGCTTGCTTTCTGACAGGAGAGCTGACAGTTT Tragopan_temminckii GGATTTGCACATCCTTTTGGCTTCCTTTCTGACGGGAGAGCTGACAGTTC Arborophila_rufipectus GGATTTGCACATCCTTTTGGCTTGCTTTCTGACAGGAGAGGTGACAGTTT Arborophila_brunneopectus GGATTTGCACATCCTTTTGGCTTGCTTTCTGACAGGAGAGGTGACAGTTT Gallus_gallus GGATTTGCACATCCCTTTGGCTTGCTTTCTGACGGGAGAGGTGACAGTTT Anas_platyrhynchos GGATTTGCACATCTTTTTGGCTTGCTCTCTGGCTGGAGATGTGGCAGTTT Arborophila_ardens GTTCTGGCACTGCGGGGCTGGGCGGCACCGCTGCGAGGTGTGGTGCCGTG Chrysolophus_amherstiae TTTCTGGAGCAGTGGGGCTGAGCGTCACTGCTGTGAGGCGGCGTGCAGCG Lophophorus_lhuysii GTTCTGGAGCTCTGGGGCTGAGCATTACTGCTGTGAGGCAGCRTGCAGTG Meleagris_gallopavo GTTCTGGAGCTGTGGGGCTGAGAGTTATTGCTGTGAGGCGGCGTGCAGTG Phasianus_colchicus TTTCTGGAGCAGTGGGGCTGAGCGTCACTGCTGTGGGGCGGYGTGCAGCG Pucrasia_macrolopha TTTCTAGAGCTGCGGGGCTGAGCGTTACTGCTGTGAGGTGGCGTGCAGTG Syrmaticus_reevesii TTTCTGGAGCAGTGGGGCTGAGCGTTACTGCTGTGAGCTGGCGTGCAGCG Tetraophasis_szechenyii GTTCTGGAGCTCTGGGGCTGAGCGTTACTGCTGTGAGGCAGCGTGCAGTG Tragopan_temminckii GTTCTGGAGCTGTGGGGCTGAGCGTTACTGCTGTGAGGCGGCGTGCCGTG Arborophila_rufipectus GTTCTGGCACTGCGGGGCTGGGCGGCACCGCTGTGAGGTGTGGTGCCATG Arborophila_brunneopectus GTTCTGGCACTGCGGGGCTGGGCGGCACCGCTGTGAGGTGTGGTGCCATG Gallus_gallus GTTCTGGCATTGGGGGGCTGAGAGTTACTGCAGCGCAGCGCAGCCCAGCA Anas_platyrhynchos GTTCTTGCTTGGCGGGGCTGAGCGTGCTCGCTCTGACGCGGCGCCCGGTG Arborophila_ardens CGGTGCAGCCCAGCAGAGCCGCCTCCGCCGTGCCATCCAGCCCGTGATAA Chrysolophus_amherstiae CGGCGCAGCCCAGCAAAGCTGCTTCCACTGTGCCATCCAGCCGGTGATTA Lophophorus_lhuysii CAGTGCAGCCCAGCAGAGCTGCCTCCACTGTGCCATCCAGCCGGTGATTA Meleagris_gallopavo CAGTGCAGCCCAGCAAAACCGCCTCCACTGTGCCATCCAGCCGGTGATTA Phasianus_colchicus YGGCGCAGCCCAGCAAAGCTGCCTCCACTGTGCCATCCAGCCGCTGATTA Pucrasia_macrolopha CAGTGCAGCCCAGCAAAGCTGCCTCCACTGTACCAGCCAGCCGGTGATTA Syrmaticus_reevesii CGGCGCAGCCCAGCAAAGCTGCCTCCACTGTGCCATCCAGCCGGTGATTA Tetraophasis_szechenyii CAGTGCAGCCCAGCAGAGCTGTCTCCACTGTGCCATCCAGCCGGTGATTA Tragopan_temminckii CAGTGCAGCCCAGCAAAGCTGCCTCCACTGTGCCATCCAGCCGGTGATTA Arborophila_rufipectus CGGTGCAGCCCAGCAGAGCCGCCTCCGCCGCGCCATCCAGCCCGTGATAA Arborophila_brunneopectus CGGTGCAGCCCAGCAGAGCCGCCTCCGCCGCGCCATCCAGCCCGTGATAA Gallus_gallus GAGC-CGCCTTCACTGTGCCGCCTTCACTGTGCCGTCCAGCCAGTGATGG Anas_platyrhynchos --GCGCAGGCTGGCCAAGCTGTCTCTGCTCTGCCAGCCCGGCTTTGACAA Arborophila_ardens ACAGTGTTAAGTAAGGGCTGTGTGTCTGAGGATGGCCTCATCCGGCTGGC Chrysolophus_amherstiae GCAGTGTTAAATTAGGGCTGTGTGTCTGAGAACGGCCTCCCCTGGCCAGC Lophophorus_lhuysii GCAGTGTTAAATTAGGGCTGTGTGTCTGAGAACGGCCTCCCCTGGCCAGC Meleagris_gallopavo GCAGTGTTAAATTAGGGCTGTGTGTCTGAGAACGGCCTCCCCTGGCCAGC Phasianus_colchicus GCAGTGTTAAATTAGGGCTGTGT--CTGAGAACGGCC-CCCCTGGCCAGC Pucrasia_macrolopha GCAGTGTTAAATTAGGGCTGTGTGTTTGAGAACGGCCTCCC-TGGCCAGC Syrmaticus_reevesii GCAGTGTTAAATTAGGGCTGTGTGTCCGAGAACGGCCTCCTCTGGCCAGC Tetraophasis_szechenyii GCAGTGTTAAATTAGGGCAGTGTGTCTGAGAACGGCCTCCCCTGCCCAGC Tragopan_temminckii GCAGTGTTAAATTAGGGCTGTGCGTCTGAGAACGGCCTCCCCCGGCCAGC Arborophila_rufipectus ACAGTGTTAAGTAAGGGCTGTGTGTCTGAGGATGGCCTCATCCGGCTGGC Arborophila_brunneopectus ACAGTGTTAAGTAAGGGCTGTGTGTCTGAGGATGGCCTCATCCGGCTGGC Gallus_gallus ACAGTGT-AAATAAGGGCCGTGTGTCTGAGAACGGCCTCCTCCAGCCGGC Anas_platyrhynchos ACAGTGTTAATCAGAAATCGTGTGTCTGAAAACGCCCTCCTCCGTTCAGC Arborophila_ardens CCAGCTCCCAGCCACACAGCAGGTGGGGTCGGTCCCCCACACATAGGTAA Chrysolophus_amherstiae TCAGCTCCCAGCCAGACTGCAGGCAG---CTGTTGGCGGGGT-CGGGCCC Lophophorus_lhuysii TCAGCTCCCAGCCATACTGCAGGCAG---CTGTTGGCGGGGT-CGGGCCC Meleagris_gallopavo TCAGCTCCCAACCATACTGCAGGCAG---CCGTAGGCGGGGT-CGGGCCC Phasianus_colchicus TCAGCTCCCAGCCAGACTGCAGGCAG---CTGTCGGCGGGGT-CGGGCCC Pucrasia_macrolopha TGAGCTCCCAGCCATACTGCAGGCAG---CTGTTGGCGGGGT-CGGGCCC Syrmaticus_reevesii TCAGCTCCCAGCCAGACTGCAGGCAG---CTGT----------CGGGCCC Tetraophasis_szechenyii TCAGCTCCCAGCCATACTGCAGGCAG---CTGTTGGCGGGGT-CGGGCCC Tragopan_temminckii TCAACTCCCAGCCATACTGCAGGCAG---CTGTTGGCAGGGT-CGGGCCC Arborophila_rufipectus CCAGCTCCCAGCCACACAGCAGGCGGCGTCGGTCCCCCACGCATAGGTAA Arborophila_brunneopectus CCAGCTCCCAGCCACACAGCAGGCGGGGTCGGTCCCCCACGCATAGGTAA Gallus_gallus TCCGCTCCCAGCCGTACTGCAGGCAG---CTGTTGGCAGGGC-CGGGCCC Anas_platyrhynchos TCAGCCCTCAGCCACAAGCGAGGCA----CCGTTTTGCTGGTTCGGGGCT Arborophila_ardens CCTGGGAT-GCTGGCTGGTGAGCAGAACCTGAGTGCAGTGCTGCAGCTCA Chrysolophus_amherstiae CCAGGCACAGATGACC--TGAGCAGAACCTGGAGGCAG--CTGCAGATCA Lophophorus_lhuysii CCAGGCACAGATGACC--TGTGCAGAACCTGGAGGCAGTGCTGCAGATCA Meleagris_gallopavo CCAGGCACAGATGATC--CGAGCAGAACCCGGAGGCAGTGCTGCAGATCA Phasianus_colchicus CCAGGCACAGATGACC--TGAGCAGAACCTGGAGGCAGTGCTGCAGGTCA Pucrasia_macrolopha CCAGGCACAGATGACC--TGAGCAGAACCTGGAGGCAGTGCTGCAGATCA Syrmaticus_reevesii CCAGGCACAGATGACC--TGAGCAGAACCTGGAGGCAGTGCTGTAGGTCA Tetraophasis_szechenyii CCAGGCACAGATGACC--TGAGCAGAACCTGGAGGCAGTGCTGCAGATCA Tragopan_temminckii CCAGGCACAGATGACC--TGAGCAGAACCTGGAGGCAGTGCTGCAGATCA Arborophila_rufipectus CCTGGGAT-GCTGTCTGGTGAGCAGAACCTGAGCGCAGTGCTGCAGCTCA Arborophila_brunneopectus CCTGGGAT-GCTGTCTGGTGAGCAGAACCTGAGCGCAGTGCTGCAGCTCA Gallus_gallus CCAGGCACGGGTGACC--CGAGCAGAACCTGGGGGCAGTGCTGCAGCTCA Anas_platyrhynchos CCTGGCACAAGTTGCT--TGGGTAGGAGTAGGAGGTGTGACGGGCACCCC Arborophila_ardens GAGTGGGGCTGTGGGCACATGGATG-GGTGCTGTGTG-GGAGGAGGCCAG Chrysolophus_amherstiae GAGTGGGGCCGTGGGCACGTGGATGCAGTGCTGTGCG-GGAGGAGGGCAG Lophophorus_lhuysii GCATGGGGCCGTGGGCACATGGATGCAGTGCTGTGCG-GGAGGAGGGCGG Meleagris_gallopavo GAGCGGGGCCGTGGGCATGTGGATGCAGTGCTGTGCG-GGAGGAGGGCAG Phasianus_colchicus GAGTGGGGCCGTGGGCATGTGGATGCAGTGCTGTGCG-GGAGGAGGGCGG Pucrasia_macrolopha GAGTGGGGCCGTGGGCATGTGGATGCAGTGCTGTGCG-GGAGGAGGGCAG Syrmaticus_reevesii GAGTGGGGCCGGGGGCACGTGGATGCAGTGCTGTGCG-AGAGGAGGGCAG Tetraophasis_szechenyii GAGTGGGGCTGTGGACACATGGATGCAGTGCTGTGCG-GGAGGAGGGCAG Tragopan_temminckii GAGTGGGGCCRTGGGCACGTGGATGCAGAGCTGTGCG-GGAGGAGGGCAG Arborophila_rufipectus GAGTGGGGCTGTGGGCACATGGATG-GGTGCTGTGTG-GGGGGAGGCCAG Arborophila_brunneopectus GAGTGGGGCTGTGGGCACATGGATG-GGTGCTGTGTG-GGAGGAGGCCAG Gallus_gallus GAGTGGG----------------TGCAGCGCTGTGTGTGGAGGAGGGCAG Anas_platyrhynchos GAGCGGGGCCGCGGGGCCATGGGTGTGGGGCAGTCCG-GGCAGGGAATGG Arborophila_ardens G-----------------------------------------------GG Chrysolophus_amherstiae GATCCAGCAGTGGATCCCAAGGCACAGCAGCACAGCGGTTACCGCTGGGA Lophophorus_lhuysii GATCCAGCAGTGGATCCCAAGGCACAGCAGCACACTGGTTACCGCTGGGG Meleagris_gallopavo GATCCAGCAGTGAATCCCGA-GCACAGCAGCACAGTGGTTACCACTGGGT Phasianus_colchicus GATCCAGCAGTGGATCCCAAGGCACAGCAGCACAGCGGTTACTGCTGGGA Pucrasia_macrolopha GATCCAGCAGTGGATCCCAACGCACAGCAGCACAGCGGTTACCGCTGGGA Syrmaticus_reevesii GATCCAGCACTGGATCCCAAGGCACAGCAGCACAGCGGTCACCACTGGGA Tetraophasis_szechenyii GATCCAGCAGTGGATCCCAAGGCACAGCAGCACAGCGGTTACTGCTGGGG Tragopan_temminckii GATCCAGCAGTAGATCCCAAGGCACAGCAGCACAGTGGTTACCGCTGGGG Arborophila_rufipectus G-----------------------------------------------GG Arborophila_brunneopectus G-----------------------------------------------GG Gallus_gallus GATCCAGTGGTGGGTCTCAAAGCAGAGCAGCACAGCGGTCACCGCTGGGG Anas_platyrhynchos GGCTCAGCGATGGACCCTGACACACAG-AACAYGGCGGTGACTGCGGGGG Arborophila_ardens GCCTGGAGGCATCTCCCAACTCCT---CACCACACTGGCACTCATCCTCT Chrysolophus_amherstiae GCCTGCAGGCATCTTCTGACTCCTCCTCACCGCACTGGTACTCGTCCTCC Lophophorus_lhuysii GTCTGCAGGCATCTTCTGACTCCTTCCCACTGCACTGGTACTCGTCCTCT Meleagris_gallopavo GTCTGCAGCCATCTTCTGACTCCTCCTCACCGCACTGGTACTCATCCTCT Phasianus_colchicus GTCTGCAGGCATCTTCTGGCTCCTCCTCACCGCACTGKTATTTGTCCTCC Pucrasia_macrolopha GTCTGCAGGTGTCTTCTGATTCCTCCTCACCGCACTGGTACTCGTCCTCT Syrmaticus_reevesii GTCTGCAGGCATCTTCTGACTCCTCCTCACCGCACCAGTACTCGTCCTCT Tetraophasis_szechenyii GTCTGCAGGCATCTTCTGACTCCTTCCCACTGTACTGGTACTCGTCCTCT Tragopan_temminckii GTCTGCAGGCATCTTCTGACTCCTTCCCCCCGCACTGGTACTTGTTCTCT Arborophila_rufipectus GCCTGGAGGCATCTCCCAGCTCCTTCTCATCACACTAGCACTCATCCTCT Arborophila_brunneopectus GCCTGGAGGCATCTCCCAGCTCCTTCTCATCACACTAGCACTCATCCTCT Gallus_gallus CTCTGGAGGCATCTTCTGACTCCTTCCCACCACACTGGTACTCGTCCTCT Anas_platyrhynchos GTGTGAAGGTGCCTTCTGATGCCTTCCCACTGTGTCAGCACTTAGCCCAT Arborophila_ardens GCTCTGTTCTGCTTCTGAGCAGTGGGTGGGGGTTCACTGCTGATAGGGGT Chrysolophus_amherstiae GTTCCGTTCCATCTCCGAGCACTGGTTGGAGGTTCACTGCTGATGGG-GT Lophophorus_lhuysii GTTCTGTTCCGTCTCTGAGCACTGGATGAAAGTTCACGGCTGATGGGGGT Meleagris_gallopavo GTTCCATTCCCTCT-TGAGCACTGGATGGAGGTTCCCTGCTGATGGGGGT Phasianus_colchicus GTTCCGTTCCGTCTCTGAGCGCTGGTTGGAGGTTCACTGCTGATGGG-GT Pucrasia_macrolopha GTTCTGTTCCGTCTCTGAGCACTGGATGGAGGTTCACTGCTGATGGGGGT Syrmaticus_reevesii GTTCCGTTCCGTCTCTGAGCACTGGTTGGAGGTTCACTGCTGATGGGAGT Tetraophasis_szechenyii GTTCTGTTCTGTCTCTGAGCACTGGATGGAGGTTCACTGCTGATGGGGGT Tragopan_temminckii GTTCCGTTCYGTCTTTGAGCACTGGATGGAGGTTCCCTGCTGATGGGGGT Arborophila_rufipectus GCTCCGTTCTGCTTCTGAGCAGTGGGTGGGGGTTCACTGCTGATAGGGGT Arborophila_brunneopectus GCTCCGTTCTGCTTCTGAGCAGTGGGTGGGGGTTCACTGCTGATAGGGGT Gallus_gallus GCTCCGTTCTGTTTCTGAGCACAGGGTGGAGGTTCACTGCTGATGGGGGT Anas_platyrhynchos GTTCGTTGCTGGTTCTGAAC-CCGGCTGGGGATTTACTGCTCTTAGGGGT Arborophila_ardens CTTCCCCGTGCCGTGCATGGTGTGCCTTTGTCCTCCCACCCCTCAAGGTC Chrysolophus_amherstiae CTTCCCCGTGCCAGGAATGGCGTGCCTTTGTCCTCCCATCATTTGAGGTC Lophophorus_lhuysii CTTCCCCGTGCCAGGAATGGCGTGCCTTTGTCCTCCCATCACTTGAGGTC Meleagris_gallopavo CTTCCACACGCCAGGAATGG-GTGCCTTTGTCCTCCCGTCATTTGAGGTC Phasianus_colchicus CTTCCCCGTGCCGGGAATGGCGTGCCTTTGTCCTCCCATCATTTGAGGTC Pucrasia_macrolopha CTTCCCCGTGCCAGGAATGGCGTGCCCTTGTCCCCCCATCATTTGAGGTC Syrmaticus_reevesii CTTCCCCGTGCCAGGAATGGCGTGCCTTTGTCCTCCCATCATTTGAGGTC Tetraophasis_szechenyii CTTCCCCGTGCCAGGAATGGCGTGCCTTTGTCCTCCCATCACTTGAGGTC Tragopan_temminckii CTTCCCCGTGCYGGGAATGGTGTGCCTTTGTCCTCCCATCACTTGAGGTC Arborophila_rufipectus CTTCCCCGTGCCGTGCATGGTGTGCCTTTGTCCTCCCATCCCTCAAGGTC Arborophila_brunneopectus CTTCCCCGTGCCGTGCATGGTGTGCCTTTGTCCTCCCATCCCTCAAGGTC Gallus_gallus CTTCCCCGTGCCAGCAATGGCAGGCCTTTGTCCTCCCATCACTCGAGGTC Anas_platyrhynchos CCTCCTTGGGACATGAAAGGTCTGCCTTCATTCTCCCAGCCCYCAAAGGC Arborophila_ardens CCCATATCTCCATCCCTCTCTCCCTGGTGCAG Chrysolophus_amherstiae C----ATCTCCATCCCTCTCTCCCCGGTGCAG Lophophorus_lhuysii CCCGTATCTCCATCCCTTTCTCCCTGGTGCAG Meleagris_gallopavo CCCGTATCTCCATCCCTCTCTCCCTGGTGCAG Phasianus_colchicus CCCGTTTCTCCATCCCTCTCTCCCCGGTGCAG Pucrasia_macrolopha CCCGTATCTCCATCCCTCTCTCCCTGGTGCAG Syrmaticus_reevesii CCCGTATCTCCATCCCTCTCTCCC-GGTGCAG Tetraophasis_szechenyii CC-ATATCTCCATCCCTCTCTCCCTGGTGCAG Tragopan_temminckii CCCATATCTCCATCCCTCTCTCTCTGGTGCAG Arborophila_rufipectus CCCATATCTCCATCCCTCTCTCCCTGGTGCAG Arborophila_brunneopectus CCCATATCTCCATCCCTCTCTCCCTGGTGCAG Gallus_gallus CCCGCATCTCTACCCCTCTCTCCCCGGTGCAG Anas_platyrhynchos CCATTATCTGCATCCCTCTCTCCCTGCTTCAG ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = intron_sequences) = unord: 1 - 4532; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = intron_sequences) = universal: 1 - 4532; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = intron_sequences) = 'Jukes-Cantor': 1 - 4532; END; BEGIN TREES; Title 'Trees from "8NTS.con"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Arborophila_ardens, [1] 2 Chrysolophus_amherstiae, [2] 3 Lophophorus_lhuysii, [3] 4 Meleagris_gallopavo, [4] 5 Phasianus_colchicus, [5] 6 Pucrasia_macrolopha, [6] 7 Syrmaticus_reevesii, [7] 8 Tetraophasis_szechenyii, [8] 9 Tragopan_temminckii, [9] 10 Arborophila_rufipectus, [10] 11 Arborophila_brunneopectus, [11] 12 Gallus_gallus, [12] 13 Anas_platyrhynchos; TREE con_all_compat = (13:0.1608825,((10:0.008944,(1:0.023303,11:0.00457)1.00:0.019634)1.00:0.061528,(12:0.057728,((9:0.021989,(3:0.040198,8:0.018142)1.00:0.009601)1.00:0.00232,((4:0.035321,6:0.036708)0.90:0.002297,(7:0.016109,(2:0.012273,5:0.014577)1.00:0.002971)1.00:0.012967)1.00:0.002891)1.00:0.01884)0.82:0.007067):0.1608825); TREE con_all_compat = (13:0.1608825,((10:0.008944,(1:0.023303,11:0.00457):0.019634):0.061528,(12:0.057728,((9:0.021989,(3:0.040198,8:0.018142):0.009601):0.00232,((4:0.035321,6:0.036708):0.002297,(7:0.016109,(2:0.012273,5:0.014577):0.002971):0.012967):0.002891):0.01884):0.007067):0.1608825); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1453553846719; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9029023049305760750; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6398642163145825933; mqVersion 304; checksumv 0 3 397871945 null getNumChars 4532 numChars 4532 getNumTaxa 13 numTaxa 13 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 1356490.0 sumSquares -1.9369081277394967E20 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 650; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #9029023049305760750 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #9029023049305760750; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #9029023049305760750 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 949.1453291924304.8714931996148981712; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6398642163145825933 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showCharacters #6398642163145825933 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.CharListPartition.CharListPartition; newAssistant #mesquite.lists.CharListCodonPos.CharListCodonPos; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;