#NEXUS [written Tue Jan 26 13:05:24 CST 2016 by Mesquite version 3.04 (build 725) at l-PC/192.168.1.198] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=13; TAXLABELS Arborophila_rufipectus Chrysolophus_amherstiae Lophophorus_lhuysii Meleagris_gallopavo Phasianus_colchicus Pucrasia_macrolopha Syrmaticus_reevesii Tetraophasis_szechenyii Tragopan_temminckii Arborophila_ardens Arborophila_brunneopectus Gallus_gallus Anas_platyrhynchos ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=4728; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Arborophila_rufipectus CCCTGTTTGTGCTGCTACCTGTGACTAGTTTGCCTGGGGAGCCTCAGGAA Chrysolophus_amherstiae CCCTGTTTGTGCTGCTACCTGTG-CTAGCTTGCCTTGGGAGCCTCAGGAA Lophophorus_lhuysii CCCTGTTTGTGCTGCTACCTGTGACTAGCTTGCCTGGGGAGCCTCAGGAA Meleagris_gallopavo CCCTGTTTGTGCTGCTACCTGTGACTAGCTTGCCTTGGGAGCCTCAGGAA Phasianus_colchicus CCCTGTTTGTGCTGCTACCTGTGACTAGCTTGCCTTGGGAGCCTCAGGAA Pucrasia_macrolopha CCCTGTTTGTGCTGCTACCTGTGACTAGCTTGCCTTGGGAGCCTTGGGAA Syrmaticus_reevesii CCCTGTTTGTGCTGCTCCCTGTG-CTAGCTTGCCTTGGGAGCCTCAGGAA Tetraophasis_szechenyii CCCTGTTTGTGCTCCTACCTGTGACTAGCTTGCCTTGGGAGCCTCAGGAA Tragopan_temminckii CCCTGTTTGTGCTGCTACCTGTGACTAGCTTGCCTTGAGAGCCTCAGGAA Arborophila_ardens CCCTGTTTGTGCTGCTGCCTGTGACTAGTTTGCCTGGGGAGCCTCAGGAA Arborophila_brunneopectus CCCTGTTTGTGCTGCTGCCTGTGACTAGTTTGCCTGGGGAGCCTCAGGAA Gallus_gallus CCCTGTTTGTGTTGCTACCTGTGACTAGCTTGCCTGGGGAGCCTCAGGAA Anas_platyrhynchos CCCCATTTGTGCTGCCGCGTGTGACTGGCTTACCTGGTGAGACTCAGGGA Arborophila_rufipectus GAGAGAGAAGTCCCGCATTCCCTTAGCAGAAGGCGTATATGCCATCTTCT Chrysolophus_amherstiae GAGAGAGAACTCCCATATTCTCTTATCAGAATGCATATATGCCATCTTCT Lophophorus_lhuysii GAGAGAGAACTCCCATATTCTCTTATTAGAATGTATATATGCCATCTTCT Meleagris_gallopavo GAGAGAGAACTCCCATATTCTCTTATCAGAATGCACATATGCCATCTTCT Phasianus_colchicus GAGAGAGAACTCCCATATTCTCTTATCAGAATGCRTATATGCCATCTTCT Pucrasia_macrolopha GAGAGAAAACTCCCATATTCTCTTATCAGAATGCA---------TCTTCT Syrmaticus_reevesii GAGAGAGAACTCCCATATTCTCTTATCAGAATGCATATATGCCATCTTCT Tetraophasis_szechenyii GAGAGAGAACTCCCATATTCTCTTATTAGAATGCATATATGCCATCTTCT Tragopan_temminckii GAGAGAGAACTCCTATATTCTCTTATTAGAATGCATATATGCCATC---- Arborophila_ardens GAGAGAGAAGTCCCGCATTCCCTTAGCAGAAGGCATATATGCCATCTTCT Arborophila_brunneopectus GAGAGAGAAGTCCCGCATTCCCTTAGCAGAAGGCATATATGCCATCTTCT Gallus_gallus GAGAGAGAGCTCCTGTATTCTCTTACCAGAATGCATATATGCCATCTTCT Anas_platyrhynchos GGGAGGCAACTCCCTTATTCTCTTACCAGAATGCATATAAGCCATCTCCT Arborophila_rufipectus TGGTCA-CACTAGCATCAAGGAGAGCACATGTGTGGTTCAGGGCTGGAGA Chrysolophus_amherstiae TGGTCAGTATTAGCATCAGGGAGAGCACATTTGTGATTCAGGGCTGGAGA Lophophorus_lhuysii TGGTCAATACTAGCATCAAGGAGAGCACGTTTATGATTCAGGGCTGGAGA Meleagris_gallopavo TGGTCAATACTAGTGTCAAGGAGAGCACGTTTATGATTCAGGACTGGAGA Phasianus_colchicus TGGTCAGTACTAGCGTCAAGGAGAGCACGTTTGTGATTCAGGGCTGGAGA Pucrasia_macrolopha TGGTCAGTGCTGGCGTCAAGGAGAGCATGTTTATGATTCGGGTCTGGAGA Syrmaticus_reevesii TGGTCAATACTAGC-TCAAGGAGAGCACGTTTGTGATTCAGGGCTGGAGA Tetraophasis_szechenyii TAGTCAATACTAGCATCAAGGAAAGCACGTTTATGATTTAGGGCTGGAGA Tragopan_temminckii -----------------AAGGAGAGCACGTTTGTGATTCAGAGCTGGAGA Arborophila_ardens TGGTCA-CACTAGCATCAAGGAGAGCACATGTGTGGTTCAGGGCTGGAGA Arborophila_brunneopectus TGGTCA-CACTAGCATCAAGGAGAGCACATGTGTGGTTCAGGGCTGGAGA Gallus_gallus TGGTCAGTACTAGCATCAAGGAGGGCACATTTGTGATTCAGGGCTGGAGA Anas_platyrhynchos TGGTCAGTGTTAGGATCAAGAGGAGTGTGTTTGTGGTTCAGGGCTGAAAG Arborophila_rufipectus ACTACCAGGTAAGTGATGTGCTTGTCTGGAGCTCAGGTAACACAGAATGG Chrysolophus_amherstiae TCTAGCAGGTAAGTGATGTGCTTGGCTGGAGCTCAGGTAGCACAGAATGG Lophophorus_lhuysii ACTAGCAGGTAAGTGATGTGCTCGGCTGGAGCTCAGGTAGCACAGGATGG Meleagris_gallopavo ACTAGCAGGTAAATGATGTGCTCGGCTGGAGCTCAGGTAGCACAGAATG- Phasianus_colchicus TCTAGCAGGTAAGCGATGTGCGCGGCTGGAGCTCAGGTAGCACAGAATGG Pucrasia_macrolopha ACTAGCAGGTAAGTGATGTGCTCGGCTGGGGCTCAGGTAACACAGAATGG Syrmaticus_reevesii TCTAGCAGGTCAGTGATGTGCTCGGCCGGAGCTCAGGTAGCACAGAATGG Tetraophasis_szechenyii ACTAGCAGGTAAGTGATGTGCTCGGCTGGAGCTCAGGTAGCACAGAATGG Tragopan_temminckii ACTAGCAGGTAAGTGATGTGCTCGGCTGGAGCTCAGGTAGCACAGAATGG Arborophila_ardens ACTACCAGGTAAGTGATGTGCTTGGCTGGAGCTCAGGTAACACAGAATGA Arborophila_brunneopectus ACTACCAGGTAAGTGATGTGCTTGGCTGGAGCTCAGGTAACACAGAATGA Gallus_gallus ACTAGCAGGTAAGTGATGTGCTCGGCTGGAGCTCAGGTAGCACAGAATGG Anas_platyrhynchos ACTAGCAGGTAAGTGATGTGCTTGGCTAGGGCTCACCCAGCACACCGAGG Arborophila_rufipectus CCTTAGAAGTTTCATATATCCAAAGATTCCTGCCCCTCTGGTCCCTTGCG Chrysolophus_amherstiae CCTTAGAAGTTTCATATATCCAAAGGCTCCTGCCCCTCCACTCCCT-GTG Lophophorus_lhuysii CCTTCGAAGTTTCATATATTCAAAGGCTGCTGCCCCTCCACTCCCT-GTG Meleagris_gallopavo CCTTAGAAGTTTCATATA----AAGGCTCCTGCCCCTCCACTCCCT-GTG Phasianus_colchicus CCTTAGAAGTTTCATATATCCAAAGGCTCCTGCCCCTCCGCTCCCT-GTG Pucrasia_macrolopha CCTTAGAAGTTTCATATATCCAAAGGCTCCTGCCCCTCCACTCCCT-GTG Syrmaticus_reevesii CCTTAGAAGTTTCATATATCCAAAGGCTCCTG--------CTCCCT-GTG Tetraophasis_szechenyii CCTTAGAAGTTTCATATATCCAAAGGTTCCTGCCCCTCCACTCCCT-GTG Tragopan_temminckii CCTTAGAAGTTTCATATATCCAAAGGCTCCTGCCCCTCCACTCCCT-GTG Arborophila_ardens CCTTAGAAGTTTCATATATCCAAAGATTCCTGCCCCTCTGCTCCCTTGTG Arborophila_brunneopectus CCTTAGAAGTTTCATATATCCAAAGATTCCTGCCCCTCTGCTCCCTTGTG Gallus_gallus CCTTAGAAGTTTCATATATGCAAAGGCTCCTGCCCCTCCGCTCCCT-GTG Anas_platyrhynchos CCTCAGGAGTTTTGGATATCCAAAGGTTC--------------------- Arborophila_rufipectus AGGAGCTGTAGGCTCCCATGAGGCCTCCCTTCAGCCTCCTCCTCTCTGAG Chrysolophus_amherstiae AGGAGCTGCAAGCTCCCATGAGGCCTCTCCTCAGCCTCTTCTTCTCTGAG Lophophorus_lhuysii AGGAGCTGTAGGCTCCCATGAGGCCTCTCCTCAGCCTCTTCTTCTCTGAG Meleagris_gallopavo AGGAGCTGTAGGCTCCCGTGAGGCCTCTCCTCAGCCTCTTCTTCTCTGAG Phasianus_colchicus AGGAGCTGCAGGCTCCCATGAGGCCTCTCCTCAGCCTCTTCTCCTCTGAG Pucrasia_macrolopha AGGAACTGTAGGCTCCCATGAAGCCTCTCCTCAGCCTCTTCTTCTCTGAG Syrmaticus_reevesii AGGAGCTGCAGGCTCCCATGAGGCCTCTTCTCAGCCTCTTCTTCTCTGAG Tetraophasis_szechenyii AGGAGCTGTAGGCTTCCATGAGGCCTCTCCTCAGCCTCTTCT---CTGAG Tragopan_temminckii AGGAGCTGTAAGCTGCCATGAGGCCTCTCCTCAGCCTCTTCTTCTCTGAG Arborophila_ardens AGGAGCTGTAGGCTCCCATGAGGCCTCCCTTCAGCCTCCTCCTCTCTGAG Arborophila_brunneopectus AGGAGCTGTAGGCTCCCATGAGGCCTCCCTTCAGCCTCCTCCTCTCTGAG Gallus_gallus AGGAGCTGTAGGCTCCCACGAGGCCTCTCCTC-GCCTCCTCTTCTCTGAG Anas_platyrhynchos ---------AGGCCGCCATGAGGCCTCCCCTCAGCCTGCTCTGCTCTGGG Arborophila_rufipectus CTGAACAAACCAAGAGACCTCAGTCTCTCCTCACATGCCTTGCTTGC-TA Chrysolophus_amherstiae CTGAACAAACCAAGATACCTCAATCTC--TTCATATGCCTTGCTTGCCTA Lophophorus_lhuysii CTGAGCAAACCAAGAGACCTCAGTCTCTCTTCATATGCCTTGCTTGCCTA Meleagris_gallopavo TTGAACAAACCAAGAGACCTCAGTCTCTCTTCACATCCCTTGCTTGCCTT Phasianus_colchicus CTGAACAAACCAAGACACCTCAGTCTCTCTTCATATGCCTTGCTTGCCTA Pucrasia_macrolopha CTGAACAAACCAAGAGGCCTCAGTCTCTCTTCATATGTCTTGCTTGCCTA Syrmaticus_reevesii CTGAACAAACCAAGATACCTCAGTCTCTCTTCATATGCCTTGCTTGCCTA Tetraophasis_szechenyii CTGAACAAACCAAGAGACCTCAGTTTCTCTTCATATGCCTTGCTTGCCTA Tragopan_temminckii CTGAACAAACCAAGAGACCTCAGTCTTTATTCGTATGCCTTGCTTGCCTA Arborophila_ardens CTGAACAAACCAAGAGACCTCAGTCTCTCCTCACATGCCTTGCTTGC-TA Arborophila_brunneopectus CTGAACAAACCAAGAGACCTCAGTCTCTCCTCACATGCCTTGCTTGC-TA Gallus_gallus CTGAACAAACCAAGAGACCACAGTCTCTCTTCATATGCCTTGCTTGCCTA Anas_platyrhynchos CTGAGCAAACCAAGGGACCTCAGCTGTTCTTCTTGTATCTTCCCCTC-CA Arborophila_rufipectus GACCCTTTGTTATCTTCAGAACCCTCTTTCAGTCACTCTTTACTATAAAG Chrysolophus_amherstiae GACCTTGCACAATCTTCGTAAC-TTCCTTTAGATGATCTTTACTATAAAG Lophophorus_lhuysii GACCCTGCACTATCTTCATAAC-TTCCT------GATCTTTACTATAAAG Meleagris_gallopavo GACCCTGCACTATTTTCATAAC-TTCCTTTAGATGATCTTTACTATAAAG Phasianus_colchicus GACCCTGCTCAATCTTCATAAC-TTCCTTTAGATGATCTTTACTATAAAG Pucrasia_macrolopha GACCCTGCGCTATCTTTATAAC-TTCCTTTAGATGATCTTTACTATAAAG Syrmaticus_reevesii GACCCTGCACGATCTGCATAAC-TTCCTTTAGATKATCTTTACTATAAAG Tetraophasis_szechenyii GACCCTGCACTATCTTCATAAC-TTCCTTTAGATGATCTTTACTATAAAG Tragopan_temminckii GACCCTGCACTATCTTCATAAC-TTCCTTTA---GATCTTTACTATAAAG Arborophila_ardens GACCCTTCGTTATCTTCAGAACCCTCTTTCAGTCACTCTTTACTATAAAG Arborophila_brunneopectus GACCCTTCGTTATCTTCAGAACCCTCTTTCAGTCACTCTTTACTATAAAG Gallus_gallus GACCCTTCACTATCTTCATAGCCTTCCTTTAGATGGTCTTTACTATGAAG Anas_platyrhynchos GACCCTTCACCATCTTTGTAGCCCTCCTTTGGACACTCTATAAT----AG Arborophila_rufipectus TTTTATGTCCTCATATTGTGGCACCCGAAACTGCACA--ATTGCTTCTAA Chrysolophus_amherstiae TTTTATGTCCTTGTATTGTGGTGCCCAAAACTGTACACAGTTTCTTCTAA Lophophorus_lhuysii TTTTATGTCCTCGTATTGTGGTGCCTAAAACTGTACACAGTTGCTTCTAA Meleagris_gallopavo TTTTATGTCCTCGTATTGTGGTGCCCAAAACTGTACACAGTTGCTTCTAA Phasianus_colchicus TTTTATGTCCTCGTATTGTGGTGCCCGAAACTGTACACAGTTGCTTCTAA Pucrasia_macrolopha TTTTATGTTCTCGTATTGTGGTGCCTAAAACTGTACA--GTTGCTTCTAA Syrmaticus_reevesii TTTTATGTCCTCA-----TGGTGCCCTAAACTGTACACAGTTGCTTCTAA Tetraophasis_szechenyii TTTTATGTCCTCGTATTGTGGTGCCCAAAACTGTACACAGTTGCTTCTAA Tragopan_temminckii CTTTATGTTCTCGTATTGTGGTGCCCAAAACTGTACACAGTTGCTTCTAA Arborophila_ardens TTTTATGTCCTCATATTGTGGCACCCGAAACTGCACG--ATTGCTTCTAA Arborophila_brunneopectus TTTTATGTCCTCATATTGTGGCACCCGAAACTGCACG--ATTGCTTCTAA Gallus_gallus TTTTATGTCCTTGTATTGTGGTGCCCAAAAATGTACACAGTTGCTTCTAA Anas_platyrhynchos TTTTATGTCCTTATACTGTGGTGTCCAGAACTGCACA------------- Arborophila_rufipectus GCGTTGTTGCTTTTAAGTCTGCTGTAGCTCTATGGCTCTTAAAAGGTGAG Chrysolophus_amherstiae GCATTGTTGCTT-TAAGACTGCTGTAACTCTGTGGCTCTGAAGAGGTGAG Lophophorus_lhuysii GCATTGTTGCTTCTAAGTCTGCTGTAACTCCGTGGCTCTGAAAAGGTGAG Meleagris_gallopavo GCATTGTTGCTTCTAAGTCTTCTGTGGCTCCGTGGCTCCGAAAAGGTGAG Phasianus_colchicus GCATTGTTGTTC-TTAGTCTGCTGTAACTCTGTGGCTCTGGAGAGGTGAA Pucrasia_macrolopha GCACTGTTGCTTCTAAGTCTGCTGTAACTCCATGGCTCTGAAAAGGTGAG Syrmaticus_reevesii GCACTGTTGCTT-TAAGTCTGCTGTAACTCCGTGGCTCTGAAGAGGTGAG Tetraophasis_szechenyii GCACTGTTGCTTCTAAGTCTGCTGTAACTCCGTGGCTCTGAAAAGGTGAG Tragopan_temminckii GCATTGTTGCTTCTAAGTCTGCTGTAACTCTGTGGCTCTGAAAAGGTGAG Arborophila_ardens GCGTTGTTGCTTTTAAGTCTGCTGTAGCTCTATGGCTCTTAAAAGGTGAG Arborophila_brunneopectus GCGTTGTTGCTTTTAAGTCTGCTGTAGCTCTATGGCTCTTAAAAGGTGAG Gallus_gallus GCACTGTTGCTTCTAAGCCTGCTGTAACTCCGTGGCTTTGGAAAGGCAAG Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus GAGAAAGAAATCAACCTTCTGTAGCTGGTCTGTGTCACCCAACCAGACAA Chrysolophus_amherstiae AAGAAAAAA-TCAACCTTCTGTAACTGGCCTGTGCGACCCAACCAGATAA Lophophorus_lhuysii AAGAAAAAAATCAACCTTCTGTAGCTGGCCTGTGCGACCCGACCAGATAA Meleagris_gallopavo AAGAAAAAAATCAACCTTCTGTAGCTGGCCTGTGCAACCCAACCAGATAA Phasianus_colchicus AAGAAAAAA-TCAACCTTCTGTAACTGGCCTGTGCAACCCAACCAGATAA Pucrasia_macrolopha AAGAAAAAAATGAACGTTCTGTAGCTGGCCTGTGTGATCCAACCAGATAA Syrmaticus_reevesii AAGAAAAAA-TCAACCTTCTGTAAGTGGCCTGTGCGGCCCAACCAGATAA Tetraophasis_szechenyii AAGAAAAAA-TCAACCTTCTGTAGCTAGCCTGTGTGACCCAACCAGATAA Tragopan_temminckii AAGAAAAAAATCAACTTTCTGTAGCTGGCCTGTGTGACCCAACCAGATAA Arborophila_ardens GAGAAAGAAATCAACCTTCTGTAGCTGGTCTGTGTCACCCAACCAGACAG Arborophila_brunneopectus GAGAAAGAAATCAACCTTCTGTAGCTGGTCTGTGTCACCCAACCAGACAG Gallus_gallus GATAAAAAAACCAACCGTCTATAGCTGGTCTGTGGGACCCAACCAGATAA Anas_platyrhynchos ------------AACACTCTTTAGCTTGACTGTGATAACCAACCAGAGAC Arborophila_rufipectus ATACTGTCAGCTCAACACATTATCACCAAAATTGAAGAGGTTGAGATTAA Chrysolophus_amherstiae ATCCCATCAGCTCAACACACTATCACCAAAATTGAAGAGGTTAAGATTAA Lophophorus_lhuysii GTCCCGTCAGCTCAACACATTATCACCAAAATTGAAGAGGTTGAGATTAA Meleagris_gallopavo ATCCCGCCAGCTCAACACATTATCACCAAAATTGAAGAGGTTGAGATTAA Phasianus_colchicus ATCCCGTCAGCTCAACACATTATCACCAAAATTGAAGAGGCTGAGATTAA Pucrasia_macrolopha ATCCCGTCAGCTCAACACATTATCACCAAAATTGAAGAGGTTGGGATTAG Syrmaticus_reevesii ATCCCGTCAGCTCAACACATTATCACCAAAATTGAAGAGGTTGAGATTAA Tetraophasis_szechenyii ATCCTGTCAGCTCAACACATTATCACCAAAATTAAAGAGGTTGAGATTAA Tragopan_temminckii ATCCCGTCAGCTCAACACATTATCACCAAAATTGAAGAGGTTGAGATTAA Arborophila_ardens ATACTGTCAGCTCAACACATTGTCACCAAAATTGAAGAGGTTGAGATTGA Arborophila_brunneopectus ATACTGTCAGCTCAACACATTGTCACCAAAATTGAAGAGGTTGAGATTGA Gallus_gallus ATCCCATCAGCTCAACACATTATCACCAACACTGAAGAGGTTGAGATTAA Anas_platyrhynchos ATTCAATCAGCTCAACACATTCTCACCAAGAGTGAAGAGGGTGTGATTCC Arborophila_rufipectus TACTAGAGACCAGAGGCTTCTGACTTACCAGAATGCAGCCACCACTGAGA Chrysolophus_amherstiae TACCAGAGACCAGAGGCTTCTGACTTACCAGAATGCATCCACCTTTGAGA Lophophorus_lhuysii TACTAGAGACCAGAGGCTCGAC--TTATCAGAATGCAGCCACTACTGCAA Meleagris_gallopavo TACTAGAGACCAGAGGCTTCTGACTTACCAGAATGCAGCCACCTCTGAGA Phasianus_colchicus TACCAGAGACCAGAGGCTTCTGACTTACCAGAATGCAGCCACCTTTGAGA Pucrasia_macrolopha TAGTGGAGACCAGAGGCTTCTGACTTACCAGAATGCAGCCACACTAGAGA Syrmaticus_reevesii TACCAGAGACCAGAGGCTTCTGACTTACCAGAATGCAGCCACCTTTGAGA Tetraophasis_szechenyii TACTAGAG---AGGCTTCTGAC--TTACCAGAATGCAGCCACTACTGCAG Tragopan_temminckii TACTAGAGACAAGAGGCTCGACACTTACCAGAATGCGGCCACTACTGTCA Arborophila_ardens TACTAGAGACCAGAGGCTTCTGACTTACCAGAATGCAGCCACTACTGAGA Arborophila_brunneopectus TACTAGAGACCAGAGGCTTCTGACTTACCAGAATGCAGCCACTACTGAGA Gallus_gallus TACTAGAGACCAGAGGCTTCTGACTTACCAGAATGCAACCACTACTGAGA Anas_platyrhynchos TACGAGAGACTAGCAACGTACAATTTAACAGAATGCCCCCACGGAGGATA Arborophila_rufipectus TTCTTTTAACAGTTACATTGGACAGTTTCATAAGGAGTCAAGTAACTGCT Chrysolophus_amherstiae TTCTTTTAACAGTTGTGTTGGGTAGTTC-ATAAGGACTCAAGTAC----- Lophophorus_lhuysii TTTTTTTAACAGCTATGT-GGACGGTTCCATAAGGACTCAAGTAATTGTT Meleagris_gallopavo TTCTTTTAACGGTTGTGTTGGACAGTTCCGCAAGGATGCAAATAATTGTT Phasianus_colchicus TTCTTTTAACAGTTGTGTTGGATAGTTCCATAAGGACTCAAGTAATTGTT Pucrasia_macrolopha TTCTTTTAACGGTTGTGTGTGGAAGTTCCGTAAGGATTCAAGTAATTGTT Syrmaticus_reevesii TTCTTTTAACAGT-GTGTTGGATAGTTC-ATAAGGACTCAAGTAATTGTT Tetraophasis_szechenyii ATCTTTTAATAGCTGTTTTGGACAGTTCCGTAAGGACTCAAGTAATTGTT Tragopan_temminckii ATCTTTTAACAGCTGTGT-GGACAGTTCCATAACGACTCAAGTAATTGTT Arborophila_ardens TTCTTTTAACAGTTACATTGGACAGTTTCATAAGGAGTCAAGTAACTGCT Arborophila_brunneopectus TTCTTTTAACAGTTACATTGGATAGTTTCATAAGGAGTCAAGTAACTGCT Gallus_gallus TTCTTTTAACAGTTGAGTTGGACAGTTCCATAAGGACTCAAGTAATTGTT Anas_platyrhynchos TCTTATTAAACGGT-TTTTGGACCGATCCCAAAAGAATCAAGCAATTGTG Arborophila_rufipectus TAAGGACAGGAAAAAGTAAAGGAATGTAATGCAGTGGCTATAATCTGCAA Chrysolophus_amherstiae --AGGA-----AAAAGTAAAGAAATTTAGTGCAATGGATATAGACTCCAA Lophophorus_lhuysii TAAGGACAGGAAAAAGTAAAGAAATTTAATGCAGTGGATATAGGCTGCAA Meleagris_gallopavo TAAGGACTGGAAAAAGTAAAGAAATTTAATGCAATGGATATAGACTGCAA Phasianus_colchicus TAAGGA-----CAGGAAAAAGTAATTTAATGCAATGGATATAGACTGCAA Pucrasia_macrolopha TAAG-AGGGGAAAAAGTAAAGAAATTTAATGCAATGGATATAGACTGCAA Syrmaticus_reevesii TAAGGACAAGAAAAAGTAAAGAAATTTAATGCAATGGATATAGACTGCAA Tetraophasis_szechenyii TAAGGACAGAAAGAAGTAAAGAAATTTAATGCAATGGATATAGACTGCAA Tragopan_temminckii TAAGGACAGGAAAAAGTAAAGAAATTTAATGCAATGGATACAGACTGCAA Arborophila_ardens TAAGGACAGGAAAAAGTAAAGGAATGTAATGCAGTGGCTATAATCTGCAA Arborophila_brunneopectus TAAGGACAGGAAAAAGTAAAGGAATGTAATGCAGTGGCTATAATCTGCAA Gallus_gallus TAAGGACAGGAAAAAGTAAAGAAATTTAATGCAATGTATATAGACTGCAA Anas_platyrhynchos TAAGCACAG-AACAATTATAGAAATTTAATGCACTGAATATAGCCTGCAA Arborophila_rufipectus TCTCTTTTCCTGTTTCTTACAATACAGTATTTTTAACTTCATAGAATCCC Chrysolophus_amherstiae TCTTTTTTCCTGGTTCTTACAGTACAGTATTTTTAACTTCATAGATTCAC Lophophorus_lhuysii TCTTTTTTCCTGCTTCTTACAGTACAGTATTTTTAACTTCATAGAATCAC Meleagris_gallopavo TCTTTTCCCCTGTTTCTTAAAGTACAGTATTTTTAACTTCATAGAATTAC Phasianus_colchicus TCTTTTTTCCTGGTTCTTACAGTACAGTATTTTTAACTTCATAGAATCAC Pucrasia_macrolopha TCTTTTTTCCTGTTTCTTACAGTACAGTATTTTTAACTTCATAGAATCAC Syrmaticus_reevesii TCTTTTTTCCTGGTTCTTACGATACAGTATTTTTAACTTCATAGAATCAC Tetraophasis_szechenyii TCTTTTTTCCTGTTTCTTACAGTACAGTATTTTCAACTTCATAGAATCAC Tragopan_temminckii TCTTTTTTCCTGTTTCTTACAGTATGGTATTTTTAACTTCATAGAATCAC Arborophila_ardens TCTCTTTTCCTGTTTCTCACAATACAGTATTTTTAACTTCATAGAATCCC Arborophila_brunneopectus TCTCTTTTCCTGTTTCTCACAATACAGTATTTTTAACTTCATAGAATCCC Gallus_gallus TCTTTTTTCCTGTTTCTTAGAGTACACTATTTTTAACTTCATAGAATCAC Anas_platyrhynchos TCTATTGTCCTGATTCTTATACTACCGTATTTTGAACTTCATAGAATCTT Arborophila_rufipectus AGAATATCCTGAACTGGAAGAAACTGACAAAGA----------------- Chrysolophus_amherstiae AGAATATCCTGAGATGGAAGAGATCCACAAGGA----------------- Lophophorus_lhuysii AGAATATCCTGAGCTGGAAGGGATCCACAAGGGCCCCTAAATACTACT-- Meleagris_gallopavo AGAATATCCCGAACTGGAAGAGATCCACAAGGA----------------- Phasianus_colchicus AGAATATCCTGAGCTGGAAGAGATCCACAAAGA----------------- Pucrasia_macrolopha AGAATATCCTGAGCTGGAAGAGATCCACAAGGA----------------- Syrmaticus_reevesii AGAATATCCTGAGCTGGAAGAGATCCACAAAGA----------------- Tetraophasis_szechenyii AGAATATCCTGAGCTGGAAGGGATCCACAAGGGCCCTTAAATACTACTTT Tragopan_temminckii AGAATATCCTGAGCTGGAAGGGATCCACAAGGGCCCCTAA-TACTACTTT Arborophila_ardens AGAATATCCTGAACTGGAAGGGACTGACAAAGA----------------- Arborophila_brunneopectus AGAATATCCTGAACTGGAAGGGACTGACAAAGA----------------- Gallus_gallus AGAATATCCTGAGCTGGAAGGGATCCACAAGGA----------------- Anas_platyrhynchos AGCATATCCGGAGCTGGAAGCGACCCTCGAGGA----------------- Arborophila_rufipectus -------------------------------------------------- Chrysolophus_amherstiae -------------------------------------------------- Lophophorus_lhuysii -CTGAAAGAGTGGTCAGGCACTGGAATGGGCTGCCCAGGGAGGTAGTGGA Meleagris_gallopavo -------------------------------------------------- Phasianus_colchicus -------------------------------------------------- Pucrasia_macrolopha -------------------------------------------------- Syrmaticus_reevesii -------------------------------------------------- Tetraophasis_szechenyii TCTGAAAGAGTGGTCAGGTGCTGGAATGGGATGCCCAGGGAGGTGGTGGA Tragopan_temminckii TCTGAAAGAATGGTCAGGTGCTGGAATGGGCTGCCCAGGGAGGTGGTGGA Arborophila_ardens -------------------------------------------------- Arborophila_brunneopectus -------------------------------------------------- Gallus_gallus -------------------------------------------------- Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus -TCAC--------------------------------------------- Chrysolophus_amherstiae -TCAC--------------------------------------------- Lophophorus_lhuysii GTCACTGACCCTGGAGGTGTTCAAGAAACGTTTGGATTTTGTGTTGAGGG Meleagris_gallopavo -TCAC--------------------------------------------- Phasianus_colchicus -TCAC--------------------------------------------- Pucrasia_macrolopha -TCAC--------------------------------------------- Syrmaticus_reevesii -TCAC--------------------------------------------- Tetraophasis_szechenyii GTCACTGAGCCTGGAGGTGTTCAAGGAATGTTTGGATTTTGTGTTGAGGG Tragopan_temminckii GTCACCGATCCTGGAGGTGTTCAAGGAACGTTTGGATTTTGTGTTGAGGG Arborophila_ardens -TCAC--------------------------------------------- Arborophila_brunneopectus -TCAC--------------------------------------------- Gallus_gallus -TCAC--------------------------------------------- Anas_platyrhynchos -TCAC--------------------------------------------- Arborophila_rufipectus -------------------------------------------------- Chrysolophus_amherstiae -------------------------------------------------- Lophophorus_lhuysii ACATGGTTTAGTGAGAACTACTGGTGGTAGGTGGATGGTTGGACTGGATG Meleagris_gallopavo -------------------------------------------------- Phasianus_colchicus -------------------------------------------------- Pucrasia_macrolopha -------------------------------------------------- Syrmaticus_reevesii -------------------------------------------------- Tetraophasis_szechenyii ACATGGTTTAGTGAGAACTATTGGTGATAGGTGGATGGTTGGACTGGATG Tragopan_temminckii ACATGGTTTAGTGAGAACTATTGGTGATCGGTGGATGGTTGGACTGGATG Arborophila_ardens -------------------------------------------------- Arborophila_brunneopectus -------------------------------------------------- Gallus_gallus -------------------------------------------------- Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus ------------------------------------AGAGCCTAGCTCCT Chrysolophus_amherstiae ------------------------------------GGAGCCCAGCTCCT Lophophorus_lhuysii ATCTTGTGGATCTTTTTCAACCTTGGTGTTTCTGTGAGAGCCCAGCTCCT Meleagris_gallopavo ------------------------------------GGAGCCCAGCTCCT Phasianus_colchicus ------------------------------------AGAGCCCAGCTCCT Pucrasia_macrolopha ------------------------------------GGAGCCCAGCTCCT Syrmaticus_reevesii ------------------------------------GGAGCCGAGCTCCT Tetraophasis_szechenyii ATCTTGTGGATCTTTTCCAACCTTGGTGTTTCTGTGAGAGCCCAGCTCCT Tragopan_temminckii ATCTTGCGGATCTTTTCCAACCTTGGTGATTCTGTGAGATCATGGAGCCC Arborophila_ardens ------------------------------------AGAGCCTAACTCCT Arborophila_brunneopectus ------------------------------------AGAGCCTAACTCCT Gallus_gallus ------------------------------------GGAGCAAAGCTCCT Anas_platyrhynchos ------------------------------------TGAGTCCAACTCCA Arborophila_rufipectus GGCTCCACACAGCACCACCGCAAATCCAAACCCTGTGTCTGAGAGTGATG Chrysolophus_amherstiae GGCTCCACACAGCACCACCCCAAATCCAAAGCCTATGTCTGAGTGTGATG Lophophorus_lhuysii GGCTCCACACAGCACCATCCCAAATCCAAACCCTATGTCTGAGTGTGATG Meleagris_gallopavo GGCTCCACACAGCACCACCCCAAATCCAAACCCTATGTCTGAGTGTGATA Phasianus_colchicus GGCTCCACACAGCACCACCCAAAATCCAAAGCCTATGTCTGAGTGTGATG Pucrasia_macrolopha GGCTCCACACAGCACCACCCCTCATCCAAAGCCTATGACTGAGTGTGATG Syrmaticus_reevesii GGCTCCACACAGCTCCACCCCAAATCCAAAGCCTATGTCTGAGTGTAATG Tetraophasis_szechenyii GGCTCCACACAGCACCATCCCAAATCCAAACCCTATGTCTGAGTGTGATG Tragopan_temminckii AGCTCC--------TGGCCCCAAATCCAAACCCTGTGTCTGAGTGTGATG Arborophila_ardens GGCTCCACACAGCACCACCCCAAATCCAAACCCTGTGTCTGAGAGTGATG Arborophila_brunneopectus GGCTCCACACAGCACCACCCCAAATCCAAACCCTGTGTCTGAGAGTGATG Gallus_gallus GGCTCCACACAACACCACCCCAAATCCAAACCCTGTGTCTGAGTGTGATG Anas_platyrhynchos GGCCCCACACAGGACCACCCAAAAATCAACTCATGTGTCTGAGACCATTG Arborophila_rufipectus TCCAAACACAGCTTGAACTCTGGCACT-CTTACGCTACCTTCCTTCTTTC Chrysolophus_amherstiae TCCAAATACAGCTTGAGCTCCGGCACACCTTATGCTACCTTCCTCCTTTC Lophophorus_lhuysii TCCAAACACAGCTTGAACTCTGGCACTCCTTATGCTACCTTCCTCCTTTC Meleagris_gallopavo TACAAACACAGCTTGAACGCTGGCATTCCTTATGCTACCTTCCTCCTTTC Phasianus_colchicus TCCAAATACAACTTGAGCTCCGGCACTCCTTATGCTACCTTCCTCCTTTC Pucrasia_macrolopha TCCAAACACAGCTTGAACTCTGGCACTCCTTATGCT----TCCTCCTTTC Syrmaticus_reevesii TCCAAATACAGCTTGAACTCCGGCAGTCCTTATGCTACCTTCCTCCTTTC Tetraophasis_szechenyii TCCAAACACAGCTTGAACTCCGGCACTCCTTATGCTACCTTCCTCCTTTC Tragopan_temminckii TCCAAACACAGCTTGAACTCTGGCACTCCTTATGCTACCTTCCTCCTTTC Arborophila_ardens TCCAAACACAGCTTGAACTCCGGCACT-CTTATGCTACCTTCCTTCTTTC Arborophila_brunneopectus TCCAAACACAGCTTGAACTCCGGCACT-CTTATGCTACCTTCCTTCTTTC Gallus_gallus TCCAAACACAGCTTGAACTCCAGCACTCCTTATGCTACCTTCCTCCTTTG Anas_platyrhynchos TCCAGACACTTCTTGAACTCCAGCAC--CTTGTGGTACCTTCCTTCTGT- Arborophila_rufipectus TCTAGAAAATATACACTAAAATGCAAGTGAATATATGTACTTTGGTTTTG Chrysolophus_amherstiae TCTAGAAAATATAAACTGAAACACAAGTGAATATATGTACTTTGGTTTTG Lophophorus_lhuysii TCTAGAAAATATACACTGAAACACAAGTGAATATATGTACTTTGGTTTTG Meleagris_gallopavo TCTAGAAAATATACACTGAAACACAAGTGAATATATGTACTTTGGTTTTG Phasianus_colchicus TCTAGAAAACATAAACTGAAACACGAGTGAATATATGTACTTTGGTTTTG Pucrasia_macrolopha TCTAGAAAATATACCCTGAAACACAAGTGAATATATATACTTTGGTTTTG Syrmaticus_reevesii TCTAGAAAATATAAACTGAAACACAAGTGAATATATGTACTTTGTTTTTG Tetraophasis_szechenyii TCTAGAAAATATACACTGAAACACAAGTGAATATATGTACTTTGGTTTTG Tragopan_temminckii TCTAGAAAATATACACTGAAAAACAAGTGAATATATGTACTTTGGTTTTG Arborophila_ardens TCTAGAAAATATACACTAAAATGCAAGTGAATATATGTACTTTGGTTTTG Arborophila_brunneopectus TCTAGAAAATATACACTAAAATGCAAGTGAATATATGTACTTTGGTTTTG Gallus_gallus TCTAGAAAATATACACTGAAACACAAGTGAATATATGTATTTTGGTTTTG Anas_platyrhynchos ---AGAAAATATACACCGAAATACAAGTGGATGCATATACTTTATTTTTG Arborophila_rufipectus TTCTGAAACACTACTACTTGCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Chrysolophus_amherstiae TTCTGAAACACTACCTCTTGCAAAAGAAAGGAAGCCTTGAGAGCATTTCA Lophophorus_lhuysii TTCTGAAACGCTACTTCTTGCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Meleagris_gallopavo TTCTGAAACACTACTTCTTCCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Phasianus_colchicus TTCTGAAACACTACCTCTTGCAAAAGAAAGGAAGCTTTGAGAGTATTTCA Pucrasia_macrolopha TTCTGAAACACTACTTCATGCAAAAGAAAGGAAGCCTTGAGAGTATTTGA Syrmaticus_reevesii T------ACACTACCTCTTGCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Tetraophasis_szechenyii TTCTGAAACACTACTTCTTGCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Tragopan_temminckii TTCTGAAACACTACTTCTTGCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Arborophila_ardens TTCTGAAACACTACTACTTGCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Arborophila_brunneopectus TTCTGAAACACTACTACTTGCAAAAGAAAGGAAGCCTTGAGAGTATTTCA Gallus_gallus TTCCGAAACACTACTTCTTGCAAAGGAAAGGAAGCCTTGAGAGTATTTCA Anas_platyrhynchos TTCTGAAATGGTTCTTCTCACAGAAGAAAGGAAGCCTCGAGAGTATTTCA Arborophila_rufipectus GACTGTCT------GTTCCTGAGGCTATAACTAAAATATGTGTTTTCAGT Chrysolophus_amherstiae AACTGTCTTTTATAATTCCTGAGGGTGTAACTAAAGCGTGTTTTATGCAT Lophophorus_lhuysii GACTGTCTTTTATAGTTCCTGAGACTATAACTAAAACGTGTTTTATGCAT Meleagris_gallopavo GACTGTATTTTGTAGTTCCTGAGGCTATAACTAAAATGTGTTTTACACAT Phasianus_colchicus AACTGTCTTTTATAGTTCCTGAGGCTGTAACTAAAACATGTTTTATGCAT Pucrasia_macrolopha GACTGTCTTTTATAGTTCCTGAGGCTATAACTAAAATGTGTTTTATACAT Syrmaticus_reevesii AACTGTCTTATATAGTTCCTGAGGCTGTAACTAAAACATGTTTTATGCAT Tetraophasis_szechenyii GACTGTCTTTTATAGTTCCTGAGGCTATAACTAAAGTGTGTTTTATGCAC Tragopan_temminckii GACTGTCTTTTATAGTTCCTGAGGCTATAAGTAAAATGTGTTTTATGCAT Arborophila_ardens GACTGTCTTTTATAGTTCCTGAGGCTATAACTAAAGTATGTGTTTTCAGT Arborophila_brunneopectus GACTGTCTTTTATAGTTCCTGAGGCTATAACTAAAGTATGTGTTTTCAGT Gallus_gallus GATTGTCTTTTATAGTTACTGAGGCTATAACTAAAACATGTTTTATGCAT Anas_platyrhynchos CAGTGTCTTTTATAGTTCCTGAAGCTACAACTAGAACATGTGTTTTCAAC Arborophila_rufipectus GCAAATGAGGGTACATAAATATTTACAAATTTTGTACATAGAAAATATTT Chrysolophus_amherstiae ACAAATCAAGGGACATAAATATTTACAAATTTTGTGCATAGAAGATATTT Lophophorus_lhuysii GCAAATCAAGGGACATAAATAT-CACAAATTT-GTGCATAGAAGATATTT Meleagris_gallopavo GCAAATCAAGGGACATAAATATTTACAAATTTTGTGCACAGAAGATATTT Phasianus_colchicus GCAAATCAAGGGACATAAATATTTACAAATTTTGTGCATAGAAGATATTT Pucrasia_macrolopha GCAAATCAAGGGACATAAATATTTACAAATTTTGGGCATAGAAGATATTT Syrmaticus_reevesii GCAAATCAAGGGACATAAATATTTACAAATTTTGTGCATAGAAGATATTT Tetraophasis_szechenyii GCAAATCAAGGGACATAAATATTCACAAATTT-GTACATAGAAGATATTT Tragopan_temminckii GCAAATCAAGGGACATAAATATTTACAAATTTTGTGCATAGAAGATATTT Arborophila_ardens GCAAATGAGGGGACACAAATATTTACAAATTTTGTACATAGAAAATATTT Arborophila_brunneopectus GCAAATGAGGGGACACAAATATTTACAAATTT-GTACATAGAAAATATTT Gallus_gallus GCAAATCAAGGAACATAAATATTTACAAATTTTGTGCATAGAAGATATTT Anas_platyrhynchos GTACATCAAGGGACATAACTATTTACATATTTTGCTCATAAAAGATTTTT Arborophila_rufipectus TACCAAAACCAGTGGAGTTCTTGGCACTATGCGAGACACTTCTGACACTC Chrysolophus_amherstiae TATCAAAACTGGTGGAGTTCTCAGTACTATGCAAGATACTTTTGACACTC Lophophorus_lhuysii TATCAAAACTGGTGGAGTTCTCGGCACTATGCAAGATACTTTTGACACTC Meleagris_gallopavo TATCAAAACTGGCGGAGTTCTCGGCACTATGCAAGATACTTTTGACACTC Phasianus_colchicus TATCAAAACTGGTGGAGTTCTCAGTACTATGCAAGATACTTTTGACACTC Pucrasia_macrolopha TATCAAAACTGGTGGAGTTCTCGGCACTATGCAAGATACTTTTGACACTT Syrmaticus_reevesii TATCAAAACTGCTGGAGTTCTCGGTACTATGCAAGATACTTTTGACACTC Tetraophasis_szechenyii TATCAAAACTGGTGGAGTTCTCGGCACTATGCAAGATACTTTTGACACTC Tragopan_temminckii AATCAAAACTGCTGGAGTTGTCA-TACTGTGCA-GATACTTTTGACACTC Arborophila_ardens TACCAAAACCAGTGGAGCTCTTGGCACTATGCAAGATACTTCTGACACTC Arborophila_brunneopectus TACCAAAACCAGTGGAGCTCTTGGCACTATGCAAGATACTTCTGACACTC Gallus_gallus TACCAAAACCAGTGGAGTTATTGGCACTATACAAGATACTTTTGACACT- Anas_platyrhynchos TA-CAAAAGCAGTGGAG---TCAGCACTAGGCAAGATACTTCTGACACTC Arborophila_rufipectus TGCTGTCATTCCTGACTCACTTGAGA------GAAGAACAC--TGAGTTG Chrysolophus_amherstiae TGCTGTCATTCCTGACTCACTTGAACATTTACATAGAACACCCTGAGTTG Lophophorus_lhuysii TGCTGTCATTCCTGACTCACTTGAACATTTACATAGAACACCCTGAGTTG Meleagris_gallopavo TGCTGTCATTCCTGACTCACTTGAACATTTATATAGAACACCCTGAGTTG Phasianus_colchicus TGCTGTCATTCCTGACTCACTTGAACATTTACATAGAACACTCTGAGTTG Pucrasia_macrolopha TGCTGTCATTCCTGAATCACTTGAACATTTACGTAGAACACCCTGAGTTG Syrmaticus_reevesii TGCTGTCATTCCTGACTCACTTGAACATTTACATAGAACACCCTGAGTTG Tetraophasis_szechenyii TGCTGTCATTCCTGACTCACTTGAACATTTACATAGAACACCCTGAGCTG Tragopan_temminckii CGCTGTCATTCCTGACTCACTTGAACATTTACATAGAACACCCTGACTTG Arborophila_ardens TGCTGTCATTCCTGACTCACTTGAGA------GAAGAACAC--TGAGTTG Arborophila_brunneopectus TGCTGTCATTCCTGACTCACTTGAGA------GAAGAACAC--TGAGTTG Gallus_gallus -GCTGGCTTTCCTGACTCACTTGAACATTTACATAGAACACCCCAAGTTG Anas_platyrhynchos TTCTATCACTTCTGAGTCACTTGGACATTTACAAATAATATCATGAGCTG Arborophila_rufipectus GAAGGGACCAACAAAAACCATGGAGTGCTGGTTCCACACAGTACCACCCA Chrysolophus_amherstiae GAAGGGACCTACAAACACCATCAAGTCCTGCTTTCACACAGTACCACCCA Lophophorus_lhuysii GAAGGGACCTACAAGAACCATCGAATCCTGGTTCCACACAGTACCACCCA Meleagris_gallopavo GAAGGGACCTACAAGAATCATCGAGTCCTGGTTCCACACAGTACCACCCA Phasianus_colchicus GAAGGGACCTACAAGAATCATCAAGTCCTGCTTTCACACAGTACCACCCA Pucrasia_macrolopha GAAGGGACCTACAAAAACCATTGAATCCTGCTTCCACACAGTG------- Syrmaticus_reevesii GAAGGGACCTACAAGAACCATCAAGTCCTGCTTTCACACAGTACCACCCA Tetraophasis_szechenyii GAAGGGACCTACAAGAACCATTGAGTCCTGGTTCCACACAGTACCACCCA Tragopan_temminckii GAAGGGATCTACAAGAACCACTGAGTCCTGGTTCCACACATTACCACCCA Arborophila_ardens GAAGGGACCTACAAAAACCATGGAGTGCTGGTTCCACGCAGTACCACCCA Arborophila_brunneopectus GAAGGGACCTACAAAAACCATGGAGTGCTGGTTCCACGCAGTACCACCCA Gallus_gallus GAGGGGACCTACAAGAACCATCGAGTCCTGGTTCCACACAGTACCACCCA Anas_platyrhynchos CAAGGAACCCACAAGGATCACTGAGTCCTGGCTCCACAT----------- Arborophila_rufipectus AACCCTACAGCTGATGAGTGATGTCCCGGCGCTCCCTGAGCTCCGGCATC Chrysolophus_amherstiae AACCCTACAGCTGA-GAGTGGT-TCCCAGCTCTCCATAAGCTCTGGCATC Lophophorus_lhuysii AACCCTACAGCTGA-GAACGGTGTCCCAGCTCTCGCTGAGCTCTGGCATC Meleagris_gallopavo AATGCTACAGCTGA-GAGCGGTGTACCAGCTCTCCCTGAACTCTGGCA-- Phasianus_colchicus AACCCTACAGCTGA-AAGTGGT-TCCCAGCTCTCCCTAAGCTCTGGCATC Pucrasia_macrolopha AACCCTACAGCTGA-GAGCGGTGTCCCAGCTCTCCCTGAGCTCTGGCATC Syrmaticus_reevesii AACCCTACAGCTGA-GAGTGGT-TCCCAGCTCTCCCTAAGCTCTGGCATC Tetraophasis_szechenyii AACCCTACAGCTGA-GAGCAGTGTCCCAGCTCTCACTGAACTCTGGCATC Tragopan_temminckii AACCCTACAGCTGA-GAGCGGTGTACCAGCTCTCGCTGAGCTCTGGCATC Arborophila_ardens AACCCTACAGCTGATGAGTGACGTCCCAGCGCTCCCTGAGCTCCAGCATC Arborophila_brunneopectus AATCCTACAGCTGATGAGTGACGTCCCAGCGCTCCCTGAGCTCCAGCATC Gallus_gallus AACCCTGTATATGA-GAGCAGTGTCCCAGCTCTCCCTGAGCTCTGGCATC Anas_platyrhynchos ------------------TGGTGT-------------------------- Arborophila_rufipectus GGGGCTGTGCCCATTGCCCTGGGCAGCTGCTCCATGCCTGACACCCTCTG Chrysolophus_amherstiae AGGGCCATGCCCATTGCCCTGGGCAGCCGTTCCATGCCCACCACCCTCTG Lophophorus_lhuysii AGGGCCGTGCCCACTGCCCTGGGCAGCTGCTCCATGTCCACCACTCTCTG Meleagris_gallopavo -------------------------GCTGCTTCATGCCCACCTCCCTCTG Phasianus_colchicus AGGGCCATGCCCATTGCCCTGGGCAGCTGTTCCATGCCCACCACCCTCTG Pucrasia_macrolopha AGGGCTGTGCCCACTGCCCTGGGCAGCTTCTCCATGTCCACCACTCTCTG Syrmaticus_reevesii AGG-CCATGCCCATTGCCCTGGGCAGCTGTTCCATGCCCACCACCCTCTG Tetraophasis_szechenyii AGGGCCGTGCCCACTGCCCTGGGCAGCTGCTCCATGCCCACCGCCCTCTG Tragopan_temminckii AGGGCCATGCCCACTGGCCTGGGCAGCTGCTTCATGCCCACCGTCCTCTG Arborophila_ardens AGAACTGTGCCCAGTGCCCTGGGCAGCTGCTCCATGCCCAACACCCTCTG Arborophila_brunneopectus AGAACTGTGCCCAGTGCCCTGGGCAGCTGCTCCATGCCCAACACCCTCTG Gallus_gallus AGGGCTGTGCCCACTGCCCTGGGCAGCTACTCCATGCCCACCACCCTCTG Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus GGGGAGAACCTTTCCCCAGCCCCCCACCTGGCCCT-CTCTGACGCAGCTC Chrysolophus_amherstiae GAGCAGAACCTTTCCCTGACCACC--CCTGACCGTACCCTGATGCAGCTC Lophophorus_lhuysii GGGCAGAACCTTTCCCTGACCCCC--CCTGACCGTACCCTGACACAGCTT Meleagris_gallopavo GGGCAGAACCTTTCCCTGACCACC--CCCGAC-ATAGCCTGATGCAGCTC Phasianus_colchicus GAGCAGAACCTTTCCCTGACCATC--CCTGACCGTACCCTGATGCAGCTC Pucrasia_macrolopha GGGCAGAACCTTTCCCTGACCCCC--CCTGACCATACCCTGATGCAGCTC Syrmaticus_reevesii GAGCAGAACCTTCCCCTGACCACC--CCTGACCGTACCCTGATGCAGCTC Tetraophasis_szechenyii GGGCAGAACCTTTCCCTGACCCCC--CCTGACCGTACCCTGATGCAGCTC Tragopan_temminckii GGGCAGAACCTTTCCTTGACCCCC--CCTGACCGTACCCTGACGCAGCTC Arborophila_ardens GGGGAGAACCTTTCCCCAGCCCCC-ACCTGACCCT-CCCTGACGCAGCTC Arborophila_brunneopectus GGGGAGAACCTTTCCCCAGCCCCC-ACCTGACCCT-CCCTGACGCAGCTC Gallus_gallus GGGAAGAACCTTTCCCTGACCCCA--CCTG-----------------CTC Anas_platyrhynchos ---------CT--------------------------------------- Arborophila_rufipectus CATGTCATTCCCTCGGCTCCTGTCACTGTCACCAGGGAGCAGAGATCAGC Chrysolophus_amherstiae CATGTTGTTCC-TCAGCTCCTGTCACTGCCACCAGAGAGCAAAGATCAGC Lophophorus_lhuysii CATGTCGTTCC-TCAGCTCCTGTCACTGTCACCAGAGAGCAAAGATCAGC Meleagris_gallopavo CATGTCGTTCC-TCAGCTCCAGTCACTGTCACCAGAGGGCAAAGATCAGC Phasianus_colchicus CATGTCGTTCC-TCAGCTCCTGTCACTGCCACCAGAGAGCAAAGATCAGC Pucrasia_macrolopha CATGTCGTTCC-TCAGCTCCTGTCACTGTCACCAGAGAGCAAAGATCAGC Syrmaticus_reevesii CATGTTGTTCC-TCAGCTCCTGCCACTGCCACCAGAGAGCAAAGATCAGC Tetraophasis_szechenyii CATGTCGTTCC-TCAGCTCCTGTCACTGTCACCAGAGAGCAAAGATCAGC Tragopan_temminckii CATGTTGTTCC-TCAGCTCCTGTCACTCTCACCAGAGAGCAAAAATCAGC Arborophila_ardens CATGTCATTCCCTCGGCTCCTGTCACTGTCACCAGGGAGCAGAGATCAGC Arborophila_brunneopectus CATGTCATTCCCTCGGCTCCTGTCACTGTCACCAGGGAGCAGAGATCAGC Gallus_gallus CATGTCATTCC-TCAGCTCCTGTCACTGTCACCAGAGAGCAGGGATCAGC Anas_platyrhynchos --------------------TATCACTGTTACCAGAAAGAGGAGATCAGC Arborophila_rufipectus ACCTGCCCCTCTACAGTACATTAGTGTCTTAAAATAATGATTGCTGTTTC Chrysolophus_amherstiae ACCTGCTCCTCTACAGTACATTAATGTCTTAAAATAATGATTGCTGTTTC Lophophorus_lhuysii ACCTGCTCCTCTACAGTACATTAATGTCTTAAAATAATGATTGCTGTTTC Meleagris_gallopavo ACCTGCTCCTCTACAGTACATTAATGTCTTAAAATAATGATTGCTGTTTC Phasianus_colchicus ACCTGCTCCTCTACAGTACATTAATGTCTTAAAATAATGATTGCTGTTTC Pucrasia_macrolopha ACCTGCTCCTCTATAGTACATTAATATCTTAAAATAACGATTGCTGTTTC Syrmaticus_reevesii ACCTGCTCCTCTACAGTACATTAATGTCTTAAAATAATTATTGCTGTTTC Tetraophasis_szechenyii ACCTGCTCCTCTACAGTACATTAATATCTTAAAATAATGATTGCTGTTTC Tragopan_temminckii ACCTGCTCCTCTACAGGACATTAATGTCTTAAAATAATGATTGCTGTTTC Arborophila_ardens ACCTGCCCCTCTACAGTACATTAGTGTCTTAAAATAATGATTGCTGTTTC Arborophila_brunneopectus ACCTGCCCCTCTACAGTACATTAGTGTCTTAAAATAATGATTGCTGTTTC Gallus_gallus ACCTGCCCCTCTACAGTACATTAATGTCTTAAAATAATGATTGCTGTTTC Anas_platyrhynchos GCCTGCCCCTCTGCAGTGCATTAATGTCTTAAAATAATGATAGCTGTTTC Arborophila_rufipectus ATAATTCAGCAGGCTCTAACAGGGAATGATAGCAAGGGTATAAGGGATGT Chrysolophus_amherstiae ATAATCTAGCAGGCTCTAACAGGGAATGATAGSAAGGGTATAA-GGGCGT Lophophorus_lhuysii ATAATCTAGCAGGCTCTAACAGGGAATGATAGCAAGGGTATAA-GGGCGT Meleagris_gallopavo ATAATCTTGCAGGCTCTAACAGGGAATGATAGCAAGGGTATAA-GGGCGT Phasianus_colchicus ATAATCTAGCAGGCTCTAACAGGGAATGATAGCAAGGGTATAAAGGGCGT Pucrasia_macrolopha ATAATCTAGCAGGCTCTAACAGGGAATGATAGCAAGGGTATAA-GGGCGT Syrmaticus_reevesii ATAATCTAGCAGGCTCTAACAGGGAACGATAGCAAGGGTATAA-GGGCGT Tetraophasis_szechenyii GTAATCTAGCAGGCTCTAACAGGGAATGATAGCAAGGGTATAA-GGGCGT Tragopan_temminckii ATAATCTAGCAGGCTCTAACAGGGAATGATAGCAAGGG---------CGT Arborophila_ardens ATAATTCAGCAGGCTCTAACAGGGAATGATAGCGAGGGTATAAGGGATGT Arborophila_brunneopectus ATAATTCAGCAGGCTCTAACAGGGAATGATAGCGAGGGTATAAGGGATGT Gallus_gallus ATAATCTAGCAGGCTCTAACAGGGAATGATAGCAAGGGTATAA-GGGCGT Anas_platyrhynchos ATAATCTAGCAGGCTCTG-CAGGAAATGATAGCAAGGGTATATGGGACAT Arborophila_rufipectus TACTTAGGAATGGTGTGAAGTTAATTACATAAGGAATGTGAGGCCACAAG Chrysolophus_amherstiae TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGACACAAG Lophophorus_lhuysii TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGCCACAAG Meleagris_gallopavo TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGCCACAAG Phasianus_colchicus TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGACACAAG Pucrasia_macrolopha TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGCCACAAG Syrmaticus_reevesii TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGACACAAG Tetraophasis_szechenyii TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGCCACAAG Tragopan_temminckii TACTTAGGAATGGTGTGAAGTTAATTACATAGGGAATGTGAGGCCACAAG Arborophila_ardens TACTTAGGAATGGTGTGAAGTTAATTACATAAGGAATGTGAGGCCACAAG Arborophila_brunneopectus TACTTAGGAATGGTGTGAAGTTAATTACATAAGGAATGTGAGGCCACAAG Gallus_gallus TACTTAGGAATGGTGTGAAGTTAATTACATAAGGAATGTGAGGCCCCAAG Anas_platyrhynchos AACTTAGGAGTGGTGTGAAGTTA----TATAAGGAGTGTGAAGCCACAAG Arborophila_rufipectus GCCTGCTGAGATACCTTGGGAGGGCTGTGCTGGGCTCTAATGCAGCCCCA Chrysolophus_amherstiae GCCTGCTGAGATACCTTGGGAAGGCTGTGCTGGGCTCTAATGCAGCCCCA Lophophorus_lhuysii GCCTGCTGAGATACTTTGGGAGGGCTGCGCTGGGCTCTAATGCAGCCCCA Meleagris_gallopavo GCCTGCTGAGATACCTTGGAAGGGCTCTGCTGGGCTCTAATGCAGCCCCA Phasianus_colchicus GCCTGCTGAGATACCTTGGGAAGGCTGTGCTGGGCTCTAATGCAGCCCCA Pucrasia_macrolopha GTCTGCTGAGATACCTTGGGAGGGCTGTGCTGGGCTCTAATGCAGCCCCT Syrmaticus_reevesii GCCTGCTGAGATACCTTGGGAAGGCTGTGCTGGGCTCTAATGCAGCCCCA Tetraophasis_szechenyii GCCTGCTGAGATACCTTGGGAGAGCTGTGCTGGGCTCTAATGCAGCCCCA Tragopan_temminckii GCCTGCTGAGATACCTTGGGAAGGCTGTGCTGAGCTCTAATGCAGCCCCA Arborophila_ardens GCCTGCTGAGATACCTTGGGAGGGCTGTGCTGGGCTCTAATGCAGCCCCA Arborophila_brunneopectus GCCTGCTGAGATACCTTGGGAGGGCTGTGCTGGGCTCTAATGCAGCCCCA Gallus_gallus GCCTGTTGAGATACCTTGGGAGGGCTGTGCTGGGCTCTAATGCAGCCCCA Anas_platyrhynchos GCCTGTTGAGATAGTATGGGAGGATTGTTCTGGGCTGTAATGCAGCCTTA Arborophila_rufipectus TCTGTACAGCCTATAAATAGAACTGCTGGAGTGATCTTTCCCTCAATCTG Chrysolophus_amherstiae TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAAGCTG Lophophorus_lhuysii TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAAGCTG Meleagris_gallopavo TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAAGCTG Phasianus_colchicus TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAAGCTG Pucrasia_macrolopha TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAAGCTG Syrmaticus_reevesii TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAAGCTG Tetraophasis_szechenyii TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTTCCTCAAGCTG Tragopan_temminckii TCTGTACAGCCTATAAATAGAGCTGCTGGAGAGATCCTTCCCTCAAGCTG Arborophila_ardens TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAATCTG Arborophila_brunneopectus TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAATCTG Gallus_gallus TCTGTACAGCCTATAAATAGAGCTGCTGGAGTGATCTTTCCCTCAAGCTG Anas_platyrhynchos TCCATACAGCCTATAAATAGAGCTGCTGCAGTGATCTTTCCCCCAAGCTG Arborophila_rufipectus CTCCTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Chrysolophus_amherstiae CTCCTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Lophophorus_lhuysii CTCTTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Meleagris_gallopavo CTCCTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Phasianus_colchicus CTCCTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Pucrasia_macrolopha CTCATGGGATTTGCTTCAGAGCAAGCCACTTTAGATACTCAGAGACCATG Syrmaticus_reevesii CTCCTGGGATTTGCTTCAGATCGAGCCACTTTGGACACTCAGAGACCATG Tetraophasis_szechenyii CTCCTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Tragopan_temminckii CTCCTGGGATTTGCTTCAGATCAAGCTACTTTGGACACTCAGAGACCATG Arborophila_ardens CTCCTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Arborophila_brunneopectus CTCCTGGGATTTGCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Gallus_gallus CTC-TGGGATTTGCTTCAGATCAAGCCACTCTGGTCACTCAGAGACCATG Anas_platyrhynchos TTCCTGGGATTTCCTTCAGATCAAGCCACTTTGGACACTCAGAGACCATG Arborophila_rufipectus CTCAGGGACACTCACATTTCTGCAGTGATGTTTGACACAATGCATGCTTC Chrysolophus_amherstiae CTCAGGGACACTCATATTTCTGCAGCGGTTGTTGATGCAATGCGTGCTTC Lophophorus_lhuysii CTCAGGGACACTCGTATTTCTGCAGTGATTGTTGATGCAATGCATGCTTC Meleagris_gallopavo CTCAGGGACACTCGTATTTCTGCAGTGATGTTTGATGCAATGCATGCTTC Phasianus_colchicus CTCAGGGACACTCATATTTCTGCAGCGATTGTTGATGCAATGCGTGCTTC Pucrasia_macrolopha CTCAGGGACACTCATATTTCTGCAGTGATGTTTGATACAATGCATGGTTC Syrmaticus_reevesii CTCAGGGACACTCATATTTCTGCAGCGATTGTTGATGCAATGCATGCTTC Tetraophasis_szechenyii CTCAGGGACACTCGTATTTCTGCAGTGATTGTTGA-GCAATTCATGCTTC Tragopan_temminckii CTCAGGGACACTCGTATTTCTGCAGTGATGTTTGATGCAACGCATGCTTG Arborophila_ardens TTGAGGGACACTCACATTTCTGCAGTGATTGTTGACACAATGCATGCTTC Arborophila_brunneopectus CTGAGGGACACTCACATTTCTGCAGTGATGTTTGGCACAATGCATGCTTC Gallus_gallus CTCAGGGACACTCATATTTCTGCAGTGATGTTTGATGCAATGCATGCTTC Anas_platyrhynchos CTCAGGGACTATCATGTATCTTCAGCGATCTTTTACACCATACATGCTTC Arborophila_rufipectus CAGGGGAACTATGA-GTATTATGAAAAAA-GGGTTTCACTTTTTAACGTG Chrysolophus_amherstiae CAGGGGAACTATGAAGTATTATGAAAAAA-GGGTTTCACTTTTTAACATG Lophophorus_lhuysii CAGGGGAACTATGAAGTATTATGAAAAAA-GGGTTTCACTTTTTAATGTG Meleagris_gallopavo CAGGGGAACTATGAAATATTATGAAAAAA-GGGTTTCACTTTTTAATGTG Phasianus_colchicus CAGGGGAACTATGAAGTATTATGAAAAAA-GGGTTTCACTTTTTAACATG Pucrasia_macrolopha CAGGGGAACTATGAAGTATTATGAAAAAA-GGGTTTTACTTTTTAACGTG Syrmaticus_reevesii CAGGGGAACTATGAAGTATTATGAAAAAA-GGGTTTCACTTTTTAACGTG Tetraophasis_szechenyii CAAGGGAACTATGAAGTATTATGAAAAAA-GGGTTTCACTTTTTAACGTG Tragopan_temminckii CAGGGGAACTATGAAGTATTATGAAAAAA-GGGTTTCACTTTTTAACGTG Arborophila_ardens CAGGGGAACTATGA-GTACTATGAAAAAA-GGGTTTCACTTTTTAACATG Arborophila_brunneopectus CAGGGGAACTATGA-GTATTATGAAAAAA-GGGTTTCACTTTTTAACATG Gallus_gallus CAGGGGAACTATGAAGTATTATGAAAAAAAGGGTTTCACTTTTTAACGTG Anas_platyrhynchos CAGGGGAACTATAAAGTATTAGGAAAAAAACTGTTTTACTTTTTAACATG Arborophila_rufipectus GTTTTAAA-GAGCAGTGCTTCAGAACGGTGTTTTCTAATGGAGAACTCTG Chrysolophus_amherstiae GTTTTAAA-GAGCAGTGCTTCAGAAGGACGCTTTCTAGTGGAGAACTCTG Lophophorus_lhuysii GTTTTAAA-GAGCAATGCTTCAGAAGGATGTTTTCTAATGGAGAACTCTG Meleagris_gallopavo GTTTTAAA-GAGCAGTGCTTCAGAAGGATGTTTTCTAATGGAGAGCTCTG Phasianus_colchicus GTTTTAAA-GAGCAGTGCTTCAGAAGGATGCTTTCTAGTGGAGAACTCTG Pucrasia_macrolopha GTTTTAAA-GAGCAGTGTTTCAGAAGGATGTTTTCTAATGGAGAGCTCTG Syrmaticus_reevesii GTTTTAAA-GAGCAGTGCTTCAGAAGGATGTTTTCTAATGGAGAACTCTG Tetraophasis_szechenyii GTTTTAAA-GAGTAATGCTTCAGAAGGATGTTTTCTAATGGAGAACTCTG Tragopan_temminckii GTTTTAAA-GAGCAGTGCTTCAGAAGGATGTTTTCTAATGAAGAACTCTG Arborophila_ardens GTTTTAAAAGAGCAGTGCTTCAGAACGGTGTTTTCTAATGGAGAACTCTG Arborophila_brunneopectus GTTTTAAAAGAGCAGTGCTTCAGAACGGTGTTTTCTAATGGAGAACTCTG Gallus_gallus GTTTTAAA-GAGCAATTCTTCAGAAGGGTATTTTCTAATGGAGAACTCTG Anas_platyrhynchos TTTTTTAAACAGCAGTTTGTCAGATGGACTTTTTCTAAAGGGTAACTCTG Arborophila_rufipectus GAGGTACCAAC---AATGTCTTTCTTTGAAACAGAATGTCACAGCCACGC Chrysolophus_amherstiae GAGGTACCAACTCTGATGTCTTTATTTGCAACAGAATGTCACAGCCACGC Lophophorus_lhuysii GAGGTACCAACTCTGATGTCTTT----GCAACAGAATGTCACAGCCACGC Meleagris_gallopavo GAGGTACCAACTCTGATGTCTTTGTTTGCAACGGAACGTCACAGCCACAC Phasianus_colchicus GAGGTACCAACTCTGATGTCTTTATTTGCAACAGAATGTCACAGCCATGC Pucrasia_macrolopha GAGGTACCAACTCTGATGTCTTTGTTTGCAACAAAATGTCACAGCCACAC Syrmaticus_reevesii GAGGTACCAACTCTGATGTCTTTATTTGCAACAGAATGTCACAGCCACGC Tetraophasis_szechenyii GAGGTACCAACTCTGATGTCTTT----GCAACAGAATGTCACAGCCACGC Tragopan_temminckii GAGGTACCAACTCTGATGTCTTT----GCAACAGAATGTCACAGCCACGC Arborophila_ardens GAGGTACTAAC---AATGTCTTTCTTTGAAACAGAATGTCACAGCCATGC Arborophila_brunneopectus GAGGTACTAAC---AATGTCTTTCTTTGAAACAGAATGTCACAGCCATGC Gallus_gallus GAGGTACCGGCTCTGATGTCTTTGTTTGCAACAGAATGTCACAACCACGC Anas_platyrhynchos GACGTACTGAATCTGATGTCTTTGTTTGAATCAGAATGTCATCACCACTC Arborophila_rufipectus TTTTTACGGTCAAAAGCATAATTCAGTGATATGTTCATTGTAATATTCAT Chrysolophus_amherstiae TTTCTAAGGTCAAAAGCGTAATTCAGTGATATGTTCATTGTAATACTCCT Lophophorus_lhuysii TTTCTAAGGTCAAAAGCGTAATTCAGTGATATGTTCATTGTAATACTCCT Meleagris_gallopavo TTTCTAAGTACAA---CGTAATTCAGTGATATGTTCATTGTAATACTCCT Phasianus_colchicus TTTCTAAGGTCAAAAGCGTAATTCAGTGATAYGTTCATTGTAATACTCCT Pucrasia_macrolopha TTTCTAAGGTCAAAAGCGTAATTCAGTGATATGTTCATTGTAATACTCAT Syrmaticus_reevesii TTTCTAAGGTCAAAAGCGTAATTCTGTGATATGTTCATTGTAATACTCCT Tetraophasis_szechenyii TTTCTAAGGTCAAAAGCGTAAGTCAGTGATATGTTCATTGTAATACTCCT Tragopan_temminckii TTTCTAAGGTCAAAAGCGTAATTCAGTGATATGTTCATTGTAAAACTCCT Arborophila_ardens TTTTTACGGTCAAAAGCGTAATTCAGTGATATGTTCATTGTAATATTCAT Arborophila_brunneopectus TTTTTACGGTCAAAAGCGTAATTCAGTGATATGTTCATTGTAATATTCAT Gallus_gallus TTTCTAAGATCAAAAGCATAATTCAGTGATCTGTTCATTGTAATACTTCT Anas_platyrhynchos TTTCTAAGGTCAAAAGCATAATTCAATGATATATTCGTTGTACTGTTCCT Arborophila_rufipectus TTTGCTTTGAATTT-------GAAAGGTGTTTAAATGTGAGTTGGTGTAC Chrysolophus_amherstiae TTTGCTTTGAATTTCTTCTTCATCAGGTGTTTAAATATGAGTTGATGTGC Lophophorus_lhuysii TTTGCTTTGAATTTCTTCTTCACCAGGTGTTTAAATATGAATTGATGTGC Meleagris_gallopavo TTTGCTTTGAATTTCTTCTTCACCAGGTGTTTAAATATGAGTTGATGTGC Phasianus_colchicus TTTGCTTTGAATTTCTTCTTCATCAGGTGTTTAAATATGAGTTGATGTGC Pucrasia_macrolopha TTTGCTTTGAATTTCTTCTTCACAAGCTGTTTAAATATGAGTTGATG--- Syrmaticus_reevesii TTTGCTTTGAATTTCTTCTTCATCAGGTGTTTAAATATGAGTTGATGTGC Tetraophasis_szechenyii TTTGCTTTGAATTTCTTCTTCACCAGGTGTTTAAATATGAACTGATGTGC Tragopan_temminckii TCTGCTTTGAATTTCTTCTTCACCAGGTGTTTAAATATGAGTTGATATGA Arborophila_ardens TTTGCTTTGAATTT-------GAAAGGTGTTTAAATGTGAGTTGGTGTAC Arborophila_brunneopectus TTTGCTTTGAATTT-------GAAAGGTGTTTAAATGTGAGTTGGTGTAC Gallus_gallus TTTGCTTTGAATTTCTTCTTCACCAGGTGTTTA-------GTTGGTGTGC Anas_platyrhynchos ATTGTTTTGAATTTCTTCTTCATTAGGTGTTTAAATATGAGTTGGCATGA Arborophila_rufipectus AAAAAGGAGATGTTACTACTGTAGGTAAACAGTTTAATCGTAGAATAGAA Chrysolophus_amherstiae AAAAAGGAGACAGTACTACTGCAGGTAAACAGTTTAATCATAGAATAGAA Lophophorus_lhuysii AAAAAGGAGACAGTACTACTGTAGGTAAAAAGTTTAATCATAGAATAGAA Meleagris_gallopavo AAAAAGGAGACAGTACGACTGTAGGTAAACAGTTTTATCATAGAATAGAA Phasianus_colchicus AAAAAGGAGACAGTACTACTGTAGGTAAACAGTTTAATCATAGAATAGAG Pucrasia_macrolopha --AAAGGAGACAGTACTACTGTGGGTAAACAGTTTTATCATAGAATAGAA Syrmaticus_reevesii AAAAA-------GTACTACTGTAGGTAAACAGTTTAATCATAGAATAGAA Tetraophasis_szechenyii AAAAAGGAGACAGTACTACTGTAGGTAAAAAGTTTAATCATAGAATAGAA Tragopan_temminckii AAAAAGGAGACAGTACTACTGTAGGTAAACAGTTTAATCATAGAATAGAA Arborophila_ardens AAAAAGGAGATGTTACTACTGTAGGTAAACAGTTTAATCGTAGAATAGAA Arborophila_brunneopectus AAAAAGGAGATGTTACTACTGTAGGTAAACAGTTTAATCGTAGAATAGAA Gallus_gallus AAAAAGGAGACATTACTGCTGTGGGTAAACAGTTTAATCATAGAAGAGAA Anas_platyrhynchos CAAAAGGAGACTTTACCACTGTAGGTAGACAGTTTAATCCTAGAA----- Arborophila_rufipectus -TATCTCAAGCTGAAAGAGACCCACAAGGATCATGGAGCCCAAACTCTGA Chrysolophus_amherstiae -TATCTCAAGCCAAAAAAGACCCACAAGGATCATGGAGCCCAAACTCTGA Lophophorus_lhuysii -TATCTCAAGCCAAAAGAGACCCACAAGGACTGTGGAGCCCAAACTCTGA Meleagris_gallopavo -TATCTTAAGCCAAAAGAGACCTACAAGGATCGTGGAGCCCAAACTCTGA Phasianus_colchicus -TATCTCAAGACGAAAAAGACCCACAAGGATCATGGAGCCCAAACTCTGA Pucrasia_macrolopha -TATCTTAAGCCGAAAGAGACCTACAAGGATCGTGGAGCCCAAACTCTGA Syrmaticus_reevesii -TATCTCAAGCCGAAAAAGACCCACA-GGATCATGGAGCCCAAACTCTGA Tetraophasis_szechenyii -TATCTCAAGCCGAAAGAGACCCACAAGGATCATGGGGCCCAAACTCTGA Tragopan_temminckii -TATTTCAAGCCGAAAGAGACCCACAGAGATCATGGAGCCCAAACTCTGA Arborophila_ardens -TATCTCAAGCTGAAAGAGACCCACAAGGATCATGGAGCCCGAACTCTGA Arborophila_brunneopectus -TATCTCAAGCTGAAAGAGACTCACAAGGATCATGGAGCCCGAACTCTGA Gallus_gallus ATATCTCAAGCTGAAAGAGGCCCACAAGGATCATGGAGCCCAAACTCTGA Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus CTCCACACAGCACCACTCGAAGTCCAAACCCTTTGTCTGAGAATGTTGTC Chrysolophus_amherstiae CTCCACACAGCACCACTCAAAATCCAAACCCTATATCTGAGAATGTTGTC Lophophorus_lhuysii CTCCACACAGCACCACTCAAAATCCAAACCCTATGTCTGAGAGTGTTATC Meleagris_gallopavo CTCCACACAGCACCACTCAAAATCCAAACCTTATGTCTGAGAGTGTTGTC Phasianus_colchicus CTCCACACAGCACCACTCAAAATCCAAACCCAAAAG--AGCATTGTTGTC Pucrasia_macrolopha CTCCACACAGCACCACTCAAAATCCAGACCCTATGTCTGAGAGTGTTGTC Syrmaticus_reevesii CTCCACAAAGCACCACTCAAAATCCAAACCCAAAAG--AGCATTGTTGTC Tetraophasis_szechenyii CTCCACACAGCACCACTCAAAATCCAAATCCTATGTCTGAGAGTGTTGTC Tragopan_temminckii CTCCACACAGCACCATTCAAAATCCAAACCCTATGTCTGAGAGTGTTGTC Arborophila_ardens CTCCACACAGCGCCACTCGAAGTCCAAACCCTTTGTCTGAGAGTGTTGTC Arborophila_brunneopectus CTCCACACAGCGCCACTCGAAGTCCAAACCCTTTGTCTGAGAGTGTTGTC Gallus_gallus ATCCACACAGCACCACTCAGAATCTAAACCCTACGTCTGAGAGTGTTGTC Anas_platyrhynchos ----------------------------------ATTTGGTAATCTTTTT Arborophila_rufipectus CAAATGCTGTTTGAATTCCACCAGCCTGGGGCAGTGACCACTGTGGGCAG Chrysolophus_amherstiae CAAATGCTCTTTGAATTCTACCAGCT--------TGATCACTGCGGGCAG Lophophorus_lhuysii CAAATGCTCTTTGAACTGGGAGCAACTGGGGCAATGATCACTGCGGGCAG Meleagris_gallopavo CAAACGCTCTTTGAATTCCACCAGCT--------TGATCATTGTGGGCAG Phasianus_colchicus CAACTGCTCTTTGAATTCCACCAGCT--------CGATCACTGCAGGCAG Pucrasia_macrolopha CAAATGCTCTTTGAATTCCACCATCT--------TGATCACTGCGGGCAG Syrmaticus_reevesii CAAATGCTCTTTGAATTCCACCAGTT--------TGATTACTGCAGGCAG Tetraophasis_szechenyii CAAATGCTCTTTGAATTCCACCAGCTTGGGGCAATGATCACTGCGGGCAG Tragopan_temminckii CAAATGCTCTTTGAATTCCACCA-------GCAATGATCACTGCAGGCAG Arborophila_ardens CAAATGCTGTTTGAATTCCACCAGCCTGGGGCAGTGACCACTGTGGGCAG Arborophila_brunneopectus CAAATGCTGTTTGAATTCCACCAGCCTGGGGCAGTGACCACTGTGGGCAG Gallus_gallus CAAATGCTCTTTGAATTCTACCAGCTTAGGGCAATGATCATGGTGGGCAG Anas_platyrhynchos CA-----------------------------------------CAAACAG Arborophila_rufipectus CCTATTCCAGGGCTTTTGGACACCAGGGCAGATGTCTGAACTCGGGTTTC Chrysolophus_amherstiae CCTATTCCAGGACTTTTGGATGCTAGGGCAGATTTCTGATCTCAGATTTC Lophophorus_lhuysii CCTATTCCAGGGCTTTTGGACACCAGGGCAGATTTCTGATCTCAGGTTTC Meleagris_gallopavo CCTATTCCAGGGCTTTTGGACACCAGGGCAGATTTCTGATCTCAGGTTTC Phasianus_colchicus CCTATTCCAGGGCTTTTGAACGCTAGGGCAGATTTCTGATCTCAGATTTC Pucrasia_macrolopha CCTATTCCAGGGCTTTTGGATGCCAGGGCAGATTTCTGATCTCAGGTTTC Syrmaticus_reevesii CCTATTCCAGGGCTTTTGAATGCTAGGGCAGATT-CTGATCTCAGATTTC Tetraophasis_szechenyii CCTATTCCAGGGCTTTTGGATGCCAGGGCAGATTTCTGATCTCAGGTTTC Tragopan_temminckii CCTATTCCAGGGCTTTTGGACGCCAGGGCAGATTTCTGATCTCAGGTTTT Arborophila_ardens CCTATTCCAGGGCTTTTGGACACCACGGCAGATGTCTGAACTCAGGTTTC Arborophila_brunneopectus CCTATTCCAGGGCTTTTGGACACCACGGCAGATGTCTGAACTCAGGTTTC Gallus_gallus CCTATTCCAGGGCTTTTGGACACCAGGGCAGATTTCTGATCTCAGGTTTC Anas_platyrhynchos CCTTTTT------------------------------------------- Arborophila_rufipectus CTTGGTTATTCTTTCTGCAAAAA-GCCATTTTTTCTTAGCAGAAATACTA Chrysolophus_amherstiae CTTGGTTATCTTTTCTGCAAACA-GCCATTTTTTCTTACCAGAAATACTA Lophophorus_lhuysii CTTGGTTATCTTTTCTGCAAACA-GCCATTTTTTCTTACCAGAAATACTA Meleagris_gallopavo CTTGGTTATCTTTTCTGCAAACAAGCCATTTTTTCTTACCAGAAATACTA Phasianus_colchicus CTTGGTTATCTTTTCTGCAAACA-GCCATTTTTTCTTACCAGAAATACTA Pucrasia_macrolopha CTTGGTTATCTTTTCTGCAAGCA-GCCATTTTTTCTTACCAGAAATACTA Syrmaticus_reevesii TTTGGTTATCTTTTCTGCAAACA-GCCATTTTTTCTTACCAGAAATACTA Tetraophasis_szechenyii CTTGGTTATCTTTTCTGCAAACA-GCCATTTTTTCTTACCAGAAATACTA Tragopan_temminckii CTTGGTTATCTTTTCTGCAAACA-GCCATTTTTTCTTACCAGAAATACTA Arborophila_ardens CTTGGTTATTCTTTCTGCAAACA-GCCATTTTTTCTTAGCAGAAATACTA Arborophila_brunneopectus CTTGGTTATTCTTTCTGCAAACA-GCCATTTTTTCTTAGCAGAAATACTA Gallus_gallus CTCGGTTATCTTTTCTGCAAACA-GCCATTTTTTCTTACCAGAAATACTA Anas_platyrhynchos --------TTTTTTTT------------TTTTTTTTTTCTAGAAATACTA Arborophila_rufipectus TTCCTCTGTTTCTGATCATTCTTTTGTTGCTGAGCCAACTCAGAAGCTTA Chrysolophus_amherstiae TTCCCCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAATTCAGAAGCTTA Lophophorus_lhuysii TTCCTCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAACTCAGAAGCTTA Meleagris_gallopavo TTCCCCTGTTTCTGATCATTCTTTTGTCACTGAGCCAACTCACAAGCTTA Phasianus_colchicus TTCCCCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAATTCGGAAACTTA Pucrasia_macrolopha TTCCCCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAACTCAGAAGCTTA Syrmaticus_reevesii TTCCCCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAATTCAGAAGCTTA Tetraophasis_szechenyii TTCCCCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAACTCAGAAGCTTA Tragopan_temminckii TTCCCCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAACTCAGAAGCTTA Arborophila_ardens TTCCTCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAACTCAGAAGCTTA Arborophila_brunneopectus TTCCTCTGTTTCTGATCATTCTTTTGTCGCTGAGCCAACTCAGAAGCTTA Gallus_gallus TTCCCCCGTTTCTGATCATTCTTTTGTCACTGAGCCAACTCAGAAGCTTA Anas_platyrhynchos TTTTCCTGTTTCAGATTGCTCTTGTGCTTCTGAGCCAGCTCAGAAGCTTA Arborophila_rufipectus AGATCATCATATTTGTCATGGTAGCAGAAATCATTTAAATTTGA-TTTTA Chrysolophus_amherstiae AGATCATCATATTTGTCACGGTAACAGAAATCATTTAAATTTGACTTTTA Lophophorus_lhuysii AGATCATCATATTTGTCACGGTAGCAGAAATCATTTAAATTTGACTTTTA Meleagris_gallopavo AGATCATCATATTTGTCATGGTAACAGAAATCATTTAAATTTGACTTTTA Phasianus_colchicus AGATCATCATATTTGTCACGGTAACAGAAATCATTTAAATTTGACTTTTA Pucrasia_macrolopha AGATCATCATATTTGTCACGGTAACAGAAATCATCTAAATTTGACTTTCA Syrmaticus_reevesii AGATCAGCATATTTGTCACGGTAACAGAAATCATTTAAATTTGACTTTTA Tetraophasis_szechenyii AGATCATCATATTTGTCACAGTAGCAGAAATCATTTAAATTTGACTTTTA Tragopan_temminckii AGATCATCATATTTGTCATGGTAGCAAAAATCATTTAAATTTGACTTTTA Arborophila_ardens AGATCATCATATTTGTCATGGTAGCAGAAATCATTTAAATTTGA-TTTTA Arborophila_brunneopectus AGATCATCATATTTGTCATGGTAGCAGGAATCATTTAAATTTGA-TTTTA Gallus_gallus AGATCATCGTATTTGTCACGGTAGCAGAAATCATTTAAATTTGACTTTCA Anas_platyrhynchos AGATCATCTTATTTGTCACTGTAACATAAATCGTGT-----TGATTTTGA Arborophila_rufipectus TATCCTTTCACTTCTAAACTGTCATCTCTAGCAAAATGTGTCTGCACTTT Chrysolophus_amherstiae TATCCTTTTGCTTCTAAACTGTCATCTCTAGCAAAATGTGTCTGCACTTT Lophophorus_lhuysii TATCCTTTTGCTTCTAAACTGTCATCTCTAGCAAAATGGTC--GCGCTTT Meleagris_gallopavo TATCCTTTTGCTTCTAAACTGTCATCTCTAGCAAAATGTGTCTGCACTTT Phasianus_colchicus TATCCTTTTGCTTCTAAACTGTCATCTCTAGCGAAATGCGTCTGCACTTT Pucrasia_macrolopha TATCCTTTTGCTTTTAAACTGTCATCTCTAGCAAAATG-GTC-GCACTTT Syrmaticus_reevesii TATCCTTTTGCTTCTAAACTGTCATCTCTAGCAAAATGTGTCTGCACTTT Tetraophasis_szechenyii TATCCTTTTGCTTCTAAACTGTCGTCTCTAGCAAAAAG--------CTTT Tragopan_temminckii TATCCTTTTGCTTCTAAACTGTCATCTCTAGCAAAATGTGCCTGCGCTTT Arborophila_ardens TATCCTTTCACTTCTAAACTGTCATCTCTAGCAAAATGTGTCTGCACTTT Arborophila_brunneopectus TATCCTTTCACTTCTAAACTGTCATCTCTAGCAAAATGTCTCTGCACTTT Gallus_gallus TACCCTTTTGCTTCTAAACTGTCATCTCTAGCAAAATAAGTCTGCACTTT Anas_platyrhynchos TCTCAGTTTTTCTCTAAACTGTGATTTCTATCGAAGTGTTCCCATATTTT Arborophila_rufipectus CATGGAGAACTAGCAGCTCGCTGTTGAGCAGGGGGATTTTTAAGCGCAGC Chrysolophus_amherstiae CATGGAGAACTAGCAGCTCACTGTTGAGCA-TGGGATTTTTATGCACAGT Lophophorus_lhuysii CATGGAGAACTAGCATCTTACTGTTGAGCA-CGGGATTTTTATGCACAGT Meleagris_gallopavo CATGGAGAACTAGCAGCTTACTGTTGAGCAATGGGATTTTTATGCACAGT Phasianus_colchicus CATGGAGAACTAGCAGCTCACTGTTGAGCA-TGGGATTTTTATGCACAGT Pucrasia_macrolopha CATGGAGAACTAGCAGCCTACTCTT-AGTA--GACAATTACATGAACGGT Syrmaticus_reevesii CATGGAGAACTAGCAGCTCGCTGTTGAGCA-CGGGATTTTTATGCACGGT Tetraophasis_szechenyii CATGGAGAACTAGCAGCTTACTGTTGAGCA-TGGGATTTTTATGCACAGT Tragopan_temminckii CATGGAGAACTAGCATCTTACCGTTGAGCA-CGGGATTTTTAAGCACAGT Arborophila_ardens CATGGAGAACTAGCAGCTCGCTGTTGAGCAGGGG-ATTTTTAAGCGCAGC Arborophila_brunneopectus CATGGAGAACTAGCAGCTCGCTGTTGAGCAGGGG-ATTTTTAAGCGCAGC Gallus_gallus CATGGACAACTAGCAGCTTACCGTTGAGCAGTGGGGTTTTTAAGCACGGC Anas_platyrhynchos CATGGGGAACTAGTACTTGGCTCACAAAAAGCAGTAATTCTGCCTGGAAA Arborophila_rufipectus GATGCCAGTGAGTGCCCCAAACCAGCAGCTGGAATCAGGC---------- Chrysolophus_amherstiae GATGCCAGTCACTGCCCCAGC-CAGCAGCCGGAATCAGGCACGGAGCAGC Lophophorus_lhuysii GATGCCAGTTACTGCCCCAAA---ACAGCTGAAATCAGGCACGGAGCAGC Meleagris_gallopavo GATGCCAGTTACTGCCCCAAAGCAGCAGCTGGAATCAGGCGCGGAGCAGC Phasianus_colchicus GATGCCAGTTACTGCCCCAGC-CAGCAGCTGGAATCAGGCACGGAGCAGC Pucrasia_macrolopha GATGCCAGTTACTGCCCCAGC-CAGCAGCTGGAATCAGGCACGGAGCAGC Syrmaticus_reevesii GATGCTAGTTACTGCCCCAGC-CAGCAGCTGGAATCAGGCACGGAGCAGT Tetraophasis_szechenyii GATGCCAGTTACTGCCCCAAA-CAGCAGCTGGAATCAGGCACGGAGCAGC Tragopan_temminckii GATGCCAGTTACTGCCCCAAA-CAGCAGCTGGAATCAGGCACGTGG-AGC Arborophila_ardens GATGCCAGTGAGTGCCCCAAAC-AGCAGCTGGAATCAGGG---------- Arborophila_brunneopectus GATGCCAGTGAGTGCCCCAAAC-AGCAGCTGGAATCAGGG---------- Gallus_gallus GATGCCCATTACTGCCCCAAACCAGCAGCTGGAATCAGGCATGGAGCGGC Anas_platyrhynchos AGTACACATGGTTATTTTTAGGTTCCTGTTCTTTTCAAAAATA-ACTGGA Arborophila_rufipectus GATGCTCCTCCCGCAGAAATCAGTGCTGGAGGGCAGAATGGAGACCAGCC Chrysolophus_amherstiae GATGCTCCTCCTGCACAAATCAGTGCTGAAGCTCAGAATGGAGACCAGGC Lophophorus_lhuysii GATGCTCCTCCTGCACAAATCAGTGCTGAAGCTCAGAATGGAGACCAGGC Meleagris_gallopavo GATGCTCCTCCTGCACAAATCAGTGCTGGAGCTCAGAATGGAGACCAGGC Phasianus_colchicus GATGCTCCTCCTGCACAAATCAGTGCTGAAGCTCAGAATGGAGACCAGGC Pucrasia_macrolopha GATGCTCCTCCTGCACAAATCAGTGCTGGAGCTCAGAATGGAGATCAGGC Syrmaticus_reevesii GATGCTCCTCCTGCACAAATCAGTGCTGAAGCTCAGAATGGAGACCAGGC Tetraophasis_szechenyii GATGCTCCTCCTGCACAAATCAGTGCTGAAGCTCAGAATGGAGACCGGGC Tragopan_temminckii AACGCTCCTCCTGCACAAATCAGGGCTGAAGCTCAGAACGGAGACCAGGC Arborophila_ardens GATGCTCCTCCCGCAGAAATCAGAGCTGGAGGGCAGAATGGAGACCAGAA Arborophila_brunneopectus GATGCTCCTCCCGCAGAAATCAGAGCTGGAGGGCAGAATGGAGACCAGAA Gallus_gallus AATGCTCCTCCTG----------TGCTGGAGCTCAGAATGGAGACCAGGC Anas_platyrhynchos GGCATGAATCCAA--------ACCTCCAAAATGTGGCATCATTTCAAAGC Arborophila_rufipectus CGGATGGGGCACTGGGCAGCCCTGCCCATGGCAGTGGGTGGAATGGATGA Chrysolophus_amherstiae TGGATGGGGCACTGGGCAGCCA-----ATGGCAGCAGGTGGAATGGATGA Lophophorus_lhuysii TGGATGGGGCACTGGGCAGCCA-----ATGGCAGCAGGTGGAACGGATGA Meleagris_gallopavo TGGATGGG-CACTGGGCAGCCA-----ATGGCAGCAGGTGGAATGGATGA Phasianus_colchicus TGGATGGGGCACTGGGCAGCCG-----ATGGCAGCAGGTGGAATGGATGA Pucrasia_macrolopha TGGATGGGGCACTGGGCAGCCA-----ATGGCAGCAGGTGGAATGGATGA Syrmaticus_reevesii TGGATGGGGCACTGGGCAGCCA-----ATGGCAGCAGGTGGAATGGATGA Tetraophasis_szechenyii TGGATGGGGCACTGGGCATCCA-----ATGGCAGCAGGTGGAATGGATGA Tragopan_temminckii TGGATGGGGCACTGGGCAGCCA-----ATGGCAGCAGGTGGAATGGATGA Arborophila_ardens CAGATGGGGCACTGGGCAGCCCTGCCCATGGCAGTGGGTGGAATGGATGA Arborophila_brunneopectus CAGATGGGGCACTGGGCAGCCCTGCCCATGGCAGTGGGTGGAATGGATGA Gallus_gallus TGGATGGGGCACGGGGCAGCCC------TGCCCACGG----------TGA Anas_platyrhynchos CACAGGGGACGTTGGAGGGCTTTTCAAATACCAAAACATCAAGTTTCCCA Arborophila_rufipectus TCTGTAAGGTCCCTCCAACCTGAGCCACTCTGTAATTCAGTGA---CCTT Chrysolophus_amherstiae TCTGTAAGGTCCTTCCAAGCTGAGCCACTCTGTAATTCAGTGACCTCCTC Lophophorus_lhuysii TCTGTAAGGTCCCTCCAAGCTGAGCCACTCTGTAATTCAGTGACCTCCTC Meleagris_gallopavo TCTGTAAGGTCCCTCCAAGCTGAGCCACTCCGTAATTCAGTGACCTCCTC Phasianus_colchicus TCTGTAAGGTCCCTCCAAGCTGAGCCACTCTGTGATTCAGTGACCTCCTT Pucrasia_macrolopha TCTGTAAGGTCCCTCCAAGCTGAGCCACTCTGTAATTCAGCGACCTCCTC Syrmaticus_reevesii TCTGTAAGGTCCCTCCAAGCTGAGCCACTCTGTAATTCAGTGACCTCCTC Tetraophasis_szechenyii TCTGTAAGGTCCCTCCAAGCTGAGCCACTCTGTAATTCAGTGAGCTCCTC Tragopan_temminckii TCTGTAAGGTCCCTCCAAGCTGAGCCACTCTGTAATTCAGTGACCTCCTC Arborophila_ardens TCTGTAAGGTCCCTCCAACCTGAGCCGCTCTGTAATTCGGTGA---CCTT Arborophila_brunneopectus TCTGTAAGGTCCCTCCAACCTGAGCCGCTCTGTAATTCGGTGA---CCTT Gallus_gallus CCCCTAAGGTCCCTCCAACCTGAGTCACTCTGTAATTCAGTGACCCCCTC Anas_platyrhynchos CTGAAATAGGGCATCAGAACTGGGACAATCAGTTATCTTG------CCTT Arborophila_rufipectus CTCCTGCTCTGCAGAAGGGCCTCAGCAAAGCAGCACAGGGGCACTGAGGG Chrysolophus_amherstiae GTCCTGCTCTGCTGAACGGCCTCAGCAAAGCAGCACATGGGCACCGAATG Lophophorus_lhuysii CTCCTGCTCTGCTGAACGGCCTCAGCAAAGCAGCACAGGGGCACCAAATG Meleagris_gallopavo CTCCTGCTCTGCTGAATGGCCTCAGCAAAGCAGCACAGGGGCACCGAATG Phasianus_colchicus GTCCTGCTCTGATGAACGGCCTCAGCAAAGCAGCACAGGGGCACCAAATG Pucrasia_macrolopha CTCCTGCTCTGCTGAATGGCCTCAGCAGAGCAGCACAGGGGCACCGAATG Syrmaticus_reevesii GTCCTGCTCTGCTGAACGGCCTCAGCAAAGCAGCACAGGGGCACCAAATG Tetraophasis_szechenyii CTCCTGCTCTGCTGAATGGCCTCAGCAAAGCAGCACAGGGGCATCGAATG Tragopan_temminckii CTCCTGCTCTGCTGAATGGCCTCAGCAAAGCAGCACAGGGGCACTGAATG Arborophila_ardens CTCCTGCTCTGCAGAAGGGCCTCAGCAAAGCAGCACAGGGGCACCGGGGG Arborophila_brunneopectus CTCCTGCTCTGCAGAAGGGCCTCAGCAAAGCAGCACAGGGGCACCGGGGG Gallus_gallus CTCTCGCTCTGCTGAATGGCCTCAGCAAAGCAGCACAGGGGCAGCAAGGG Anas_platyrhynchos CTCCTTCT---------------------GCAACCTGTGACT-------- Arborophila_rufipectus CAGCCTGAATTCTTCCTTCAAGGGAAGATGACATTCTGCC-CATGGCAGC Chrysolophus_amherstiae T------------TA-TTCAAGGGAAGATGACTTTCTGCTGCATGGCTGT Lophophorus_lhuysii T------------TACTTCAAGGGAAGATGACCTTCTGCTGCATGGCAGT Meleagris_gallopavo T------------TCCTTCAAGGGAAGGTGACTT--TGCTGCATGGCGGT Phasianus_colchicus T------------TACTTCAAGGGAAGATGACTTCCTGCTGCATGGCTGT Pucrasia_macrolopha T------------TATTTCAAGGGAAGATGACTTTCTGCTGCATGGCAGT Syrmaticus_reevesii T------------TACTTCGAGGGAAGATGACTTTCTGCTGCATGGCTGT Tetraophasis_szechenyii T------------TACTTCAAGGGAAGATGACCTTCTGCTGCATGGCAGT Tragopan_temminckii T------------TACTTCAAGGGGAGATGACTTTCTGCAGCATGGCAAT Arborophila_ardens CAGTCTGAATTTGTCCTTCAAGGGAAGATGACTTTC-------------- Arborophila_brunneopectus CAGTCTGAATTTGTCCTTCAAGGGAAGATGACTTTCTGTC-CATGGCAGT Gallus_gallus CAGCCTGAAATATCACTGCATGGGAAGATGACTTCCTGCTGCATGGCAGT Anas_platyrhynchos -------------TATCCCCAGAAACCCTGGTAT-------------GGT Arborophila_rufipectus GCCCCACATACCTGGTGATGGCTCTGATGTTGGATCCACATGGGGATATT Chrysolophus_amherstiae GCCCCACGTGCCTGGTGATGGCTCTGATGTTGGATCCACATGAGGATATT Lophophorus_lhuysii GCCCCATGTGCCTGGTGATGGCTCTGATGTTGGATCCCCATGAGGATATT Meleagris_gallopavo GCCCCACGTGCCTGGAGCTGGCTCTGATGTTGGATCCACATGAGGACATT Phasianus_colchicus GCCCCACGTGCCTGGTGATGGCTCTGATGTTGGATCCACATGAGGATATT Pucrasia_macrolopha GCCCCACGTGCCTGGTGATGGCTCTGATGTTGGGTCCACATGAGGATATT Syrmaticus_reevesii GCCCCACGTGCCTGGTGATGGCTCTGATGTTGGATCCACACGAGGATATT Tetraophasis_szechenyii GCCCCACGTGCCTGGGGATGGGTCTGATGTTGGATCCACCCGTATATATA Tragopan_temminckii GCCCCACGTGCCTGGTGATGGCTCTGCTGTTGGATCCACATGGGGATATT Arborophila_ardens ----------CCTGGTGATGGCTCTGATGTTGGATCCACATGGGGGTATT Arborophila_brunneopectus GCCCCACATACCTGGTGATGGCTCTGATGTTGGATCCACATGGGGGTATT Gallus_gallus GCCCCACGTACGTGGTGATGGCTCTGATGTTGGATCCACATGAGGATATT Anas_platyrhynchos GCCCCAGATACCTGGAGATGGCTCTGATTTTGGATCCACGTGAGGATATT Arborophila_rufipectus TACAACCAGAAACCATGAAAACCCATCCATCTCTTAACTGCAAGGCTGAG Chrysolophus_amherstiae TACAGCCAGAAACCATGAAAACCCATCCATCTCTTAATCGCAATACTGAG Lophophorus_lhuysii TACAGCTAGAAACCATGAAAACCCATCCATCTCTTATTCTCAAAATTGAG Meleagris_gallopavo TACAGCTAGGAACCACGAAAACC-ATCCATCTCTTAACTGCAATACTGAG Phasianus_colchicus TACAGCCAGAAACCATGAAAACCCATCCATCTCTTAATCGCAATACTGAG Pucrasia_macrolopha TACAGCTAGAAACCATGAAAACCCATCCATCTCTTAA-CGCAATACTGAG Syrmaticus_reevesii TACAGCCAGAAACTATGAAAACCCATCCATCTCTTAACCGCAATACTGAG Tetraophasis_szechenyii CACCGGGGGAGACTGGGAGAACAAGACCTTCCCTTTTTCACAAAAGTGAG Tragopan_temminckii TACAGCTAGAAACCATGAAAACCCATCCATCTCTTAATCGCAATACTGAG Arborophila_ardens TACAACTAGAAACCATGAAAACCCATCCATCTCTTAATCGCAATACTGAG Arborophila_brunneopectus TACAACTAGAAACCATGAAAACCCATCCATCTCTTAATCGCAATACTGAG Gallus_gallus TACAGCTGGAAACCATGAAAAGCCATCCATCTCTTAATCGCAATACTGAG Anas_platyrhynchos TACAGTCAGAAACCATGAAAACCCATCTGTCTCTTAATTGCACTACCGAG Arborophila_rufipectus TTGTTTCACAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Chrysolophus_amherstiae TTGTTTC-CAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Lophophorus_lhuysii TTGTTT-ACAA-GATCTCTGCCAAA-GTCCATGCAGAGCACTGAGAAAAC Meleagris_gallopavo TTGTTTCACAAAGATCTCTGCCAAAAGTCCATGCAGAGTATTGAGAAAAC Phasianus_colchicus TTGTTTC-CAA-GATCTCTGCCAAAAGTCCATGCAGAGCATTGAAAAAAC Pucrasia_macrolopha TTGTTTC-CAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Syrmaticus_reevesii TTGTTTC-CAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Tetraophasis_szechenyii TTGTTT-ACAA-GATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Tragopan_temminckii TTGTTTCACAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Arborophila_ardens TTGTTTC-CAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Arborophila_brunneopectus TTGTTTC-CAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Gallus_gallus TTGTTTCACAAAGATCTCTGCCAAAAGTCCATGCAGAGCATTGAGAAAAC Anas_platyrhynchos TTGTTTCACAAAGATCTCTGCTAAAAGTCCATGCAGAGCACTGAGGAAAC Arborophila_rufipectus TTTCTGGAAAAAAAACACTGAGCGTTGGGCACAGATCGTCCTC-GGCTTC Chrysolophus_amherstiae TTTCTTAAAAAAAAACATTGAGCGTCGGGCACAGATCGTCCTCCGGCTTC Lophophorus_lhuysii TTTCTTAAAAAAAAACATTGAGCGTTGGGCACAGATCGTCCTCCGGCTTC Meleagris_gallopavo TTTCTTAAAAAAAA-CATTGAGCGTTGGGCACAGATCGTCCTCCGGCTTC Phasianus_colchicus TTTCTTAAAAAAAAACATTGAGCGTCGGGCACAGATCGTCCTCCGGCTTC Pucrasia_macrolopha TTTCTTAAAAAAAAACATTGAGCGTTGGGCACAGATCGTCCTCCGGCTTC Syrmaticus_reevesii TTTCTTAAAAAAAAACATTGAGCGTCGGGCACAGATCGTCCTCCGGCTTC Tetraophasis_szechenyii TTTCTTAAAAAAAAACATTGAGCGTTGGGCACAGATCGTCCTCAGGCTTC Tragopan_temminckii TTTCTTAAAAAACAACATTGAGCGTTGGGCACAGATCGTCCTCCAGCTTC Arborophila_ardens TTTCTGAAAAAAAAACACTGAGCGTTGGGCACAGATCGTCCTC-GGCTTC Arborophila_brunneopectus TTTCTGAAAAAAAAACACTGAGCGTTGGGCACAGATCGTCCTC-GGCTTC Gallus_gallus TTTCTTAAAAAGCAGCACTGAGCGTTGGGCACAGATCGTCCTCCGGCTTC Anas_platyrhynchos TTTCTCAAAAAAAAACACCTAGAGTTAGGCACAGATTGTCCTCCAGCTTC Arborophila_rufipectus TGAGGAGCGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTTAGCAGC Chrysolophus_amherstiae TGAGAAACGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTCAGCAGC Lophophorus_lhuysii TGAGAAACGATCATTAAAACTTCAGAGGTGTT-------CTGTCAGCAGC Meleagris_gallopavo TGAGAAATGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTCAGCAGC Phasianus_colchicus TGAGAAACGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTCAGCAGC Pucrasia_macrolopha TGAGAAACGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTCAGCAGC Syrmaticus_reevesii TGAGAAACGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTCAGCAGC Tetraophasis_szechenyii TGAGAAACGATCATTAAAACTTCAGAGGTATTTCTCTCTCTGTCAGCAGC Tragopan_temminckii TGAGAAACGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTCAGCAGC Arborophila_ardens TGAGGAGCGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTTAGCAGC Arborophila_brunneopectus TGAGGAGCGATCATTAAAACTTCAGAGGTGTTTCTCTCTCTGTTAGCAGC Gallus_gallus TGAGAAACGATCATTAAAACTTCAGAGGTGTTTCTCTCCCTGTTAGCATC Anas_platyrhynchos TGAGAAGTAATCATTAAAACTTCTGAGATATTTCT----CTGCTAACATT Arborophila_rufipectus TCCCACGCTCCCGCCAGTTTCCAGGGCTTTGGCTGCTGAACACAAAATCG Chrysolophus_amherstiae TCCCACGCTCCCGCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Lophophorus_lhuysii TCCCACGCTCCCGCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Meleagris_gallopavo TCCCACGCTCCCGCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Phasianus_colchicus TCCCACGCTCCCGCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Pucrasia_macrolopha TCCCACGCTCCCGCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Syrmaticus_reevesii TCCCACGCTCCCGCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Tetraophasis_szechenyii TCCCACGCTCCCGCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Tragopan_temminckii TCCCACGCTCCCACCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCA Arborophila_ardens TCCCACGCTCCCGCCAGTTTCCAGGGCTTTGGCTGCTGAACGCAAAATCA Arborophila_brunneopectus TCCCACGCTCCCGCCAGTTTCCAGGGCTTTGGCTGCTGAACACAAAATCA Gallus_gallus TCCCACGCTCCCTCCAGTTTCCAGGGCCTTGGCTGCTGAACACAGAATCG Anas_platyrhynchos TCCCAGCTTCTTGCCAATTTCCTGGGTCTAGACAGCTGAACACATAATCC Arborophila_rufipectus TAGAATCATTCAGGTTGGAAAGATGCTCTTCAACCATCCACCTGCCACCA Chrysolophus_amherstiae TACAATCATTCAGGTCGGAAAGATCCAGTCCAACCATCCACCTACCACCA Lophophorus_lhuysii TACAATCATTCAGGTCGGAAAGATCCAGTCCAATCATCCACCTACCACCA Meleagris_gallopavo TACAATCATTCAGGTCGGAAAGATCCAGTCCAATCGTCCACCTACCACCA Phasianus_colchicus TACAATCATTCAGGTTGGAAAGATCCAGTCCAACCATCCACCTACCACCA Pucrasia_macrolopha TACAATCATTCAGGTCGGAAAGATCCAGTCCAATCGTCCACCTATCACCA Syrmaticus_reevesii TACAATCATTCAGGTCGGAAAAATCCAGTCCAACCATCCACCTAC-ACCA Tetraophasis_szechenyii TACAATCATTCAGGTTGGAAAGATCCAGTCCAATCATCCACCTACCACCA Tragopan_temminckii TACAATCATTCAGGTCGGAAAGATCCAGTCCAGTCACCCATCTACCACCA Arborophila_ardens TAGAATCATTCAGGTTGGAAAGATGCTCTTCAACCATCCACCTGCCACCA Arborophila_brunneopectus TAGCATCATTCAGGTTGGAAAGATGCTCTTCAACCATCCAGCTGCCACCA Gallus_gallus TAGAATCGTTCAGGTTGGAAAGATCCAGTCCAACCGTCCACCTACCAGCA Anas_platyrhynchos TAAGAACCTTCAGGTAGGAAATAAACCATCAAACCTACCACCTCCCACCT Arborophila_rufipectus GCATTGCCCCCTGACCCGTGTCCCTAAGTCCCACATCTCCCTCAAACACC Chrysolophus_amherstiae GTACTGCCCCCTAATGCACATCCCTAAGTCCCACACCTCCCTCAAACACC Lophophorus_lhuysii GTATTGCCCCCTAACCCACGTCCCTAAGTCCCACACCTCCCTCAAACACC Meleagris_gallopavo GTACTGCCCCCTAACCCACATCCCCACGTCCCACACCTCCCTCAAACACC Phasianus_colchicus GTACTGCCC--------ACATCCCTAAGTCCCACACCTCCCTCAAACACC Pucrasia_macrolopha GTACTGACCCCTAACCCACATCCCTAAGTCCCACACCTCCTTCAAACCCC Syrmaticus_reevesii GTACTGCCCCCTAACCCACATCCCTAAGTCCCACACCTCCCTCAA-CACC Tetraophasis_szechenyii GTATTGCCCCCTAACCCACGTCTCTAAGTCCCACACCTCCCTCAAACACC Tragopan_temminckii GTATTGCCCCCTAACCCACGTCCCTAAGTCCCACACCTCCCTCAAACACC Arborophila_ardens GCATTGCCCCCTGACCCGTGTCCCTAAGTCCCACATCTCCCTCCAACACC Arborophila_brunneopectus GCATTGCCCCCTGACCCGTGTCCCTAAGTCCCACATCTCCCTCAAACACC Gallus_gallus GTACTGCCCCCTAACCCATGTCCCTAAGTCCCACACCTCCCTCATACACC Anas_platyrhynchos CGAGTGAAAC--------CATCACGAGCACCCACAACACCATCAAACGCC Arborophila_rufipectus TCCAGGCATGGTGATGCCACCACCTCCCTGTGCAGCCCATGCCGGTGCCC Chrysolophus_amherstiae TCCAGGCACGGTGACCCCCC-AGCTCCCCATGCAGCCCGTGCCAGTGCCC Lophophorus_lhuysii TCCAGGCACAGTGACCCCACCACCTCCCTGTGCAGCCTGTGCCAGTGCCC Meleagris_gallopavo TCCAGGCATGGTGACCCCACCACCTCCCTGTGCAGCCCGTGTCAGTGCCC Phasianus_colchicus CCCAGGCATGGTGACCCCCCCAGCTCCCCGTGCAGCCCATGCCAGTGCCC Pucrasia_macrolopha TCCAGGCATGGTGACCCCACCACCTGCCTGTGCAGCCCGTGCCAGTGCCC Syrmaticus_reevesii TCCAGGCATGGTGACCCCCC-AGCTCCCCGTGCAGCCCGTGCCAGTGCCC Tetraophasis_szechenyii TCCAGGCACAGTGACCCCACCACCTCCCTGTGCAGCCTGTGCCAGTGCCT Tragopan_temminckii TCCAGGCACAGTGACCCCACCACCTCCCTGTGCAGCCCGTGCCAGTGCCC Arborophila_ardens TCCAGGCATGGTGATGCCACCACCTCCCTGTGCAGCCCATGCCGGTGCCC Arborophila_brunneopectus TCCAGGCATGGTGATGCCACCACCTCCCTGTGCAGCCCATGCCGGTGCCC Gallus_gallus TCCAGGCACGGTGACCCCACCAACTCCCTATGCAGCCTGTGCCAGTGCCC Anas_platyrhynchos GCCAGGCAG----------------------------------------- Arborophila_rufipectus AGCTGCTCTTTCAGAGACAAAATTCTCCCTAATACCCAACCTGTTGCAAT Chrysolophus_amherstiae AACCACTCTTTCGGAGACAAAATTCTCCCTAATTTCCAACCTGTTGCAAT Lophophorus_lhuysii GACCACTCTTTCAGAGACAAAATTCTCCCTAATATCCAACCTGTTGCAAT Meleagris_gallopavo GACCGCTCTTTTGGAGACAAAATTCTCCCTAATATCCAACCTGTTGCAAT Phasianus_colchicus AGCCGCTCTTTCAGAGACAAAATTCTCCCTAATATCCAACCTGTTGCAAT Pucrasia_macrolopha AACCACTCTTTTGGAGACAAAATTCTCCCTAATATCCAACCTGTTGCAAT Syrmaticus_reevesii AACCACTCTTTCGGAGACAAAATTCTGCCTAATTTCCAACCTGTTGCAAT Tetraophasis_szechenyii GACCACTCTTTCGGAGACAAAATTCTCCCTAATATCCAACCTGTTGCAAT Tragopan_temminckii AACCACTCTTTCGGAGACAAAATTCTCCCTAATATCCAACCTGTTGCAAT Arborophila_ardens GACTGCTCTTTCAGAGACAAAATTCTCCCTAATACCCAACCTGTTGCAAT Arborophila_brunneopectus GACTGCTCTTTCAGAGACAAAATTCTCCCTAATACCCAACCTGTTGCAAT Gallus_gallus CAACGCTCTTTCAGAGATAAA-TTGTCCCTCATATCCAATCTGTTGCAAC Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus ATCCAACATCTCATATCCTTCACTCATCTGATCACAGCCTCACCACCTTT Chrysolophus_amherstiae ATCCAACATCTCACATCCTTCACTCATCTGATCACAGCCTGATCACCTTT Lophophorus_lhuysii ATCCAGCATCTCATATCCTTCACTCATCTGGTCACAGCCTTATGACCTTT Meleagris_gallopavo ATCCGACATCTCATATCCTTCACTCATCTGATTGCGGCCTGATCACTTTT Phasianus_colchicus ATCCAACATCTCACATCCTTCACTCATTTGATCACAGCCTGATCACCTTC Pucrasia_macrolopha ATCCAGCATCTCATATCCTTCACTCATCTGATCACAGCCTGATCACCTTT Syrmaticus_reevesii ATCCAACATCTCACATCCTTCACTCATCTGATCACAGCCTGATCACCTTT Tetraophasis_szechenyii ATCCAACATCTCATATCCTTCACTCATCTGGTCACAGCCTGATCACCTTT Tragopan_temminckii ATCCAACATCTCATATCCTTCACTCATCTGATCACAGCCTGACCACCTCC Arborophila_ardens ATCCAACATCTCATATCCTTCACTCATCTGATCACAGCCTCACCACCTTT Arborophila_brunneopectus ATCCAACATCTCATATCCTTCACTCATCTGATCACAGCCTCACCACCTTT Gallus_gallus ACTCAACATCTCATATCCTTCACTCATCTGACTGCAGCCTGATCACCTTC Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus GAAAGGTGCATCCCCCACTGCTGAGCACGAGGATGGGGGCTTCTGTTCC- Chrysolophus_amherstiae GAAAGGTGCATCCCCCACTGCTGAGCATGAGGATGGGGGTTCCTGTTACT Lophophorus_lhuysii GAAAGGTGCATCCCCCACTGCTGAGCATGAGGATGGGGGTTCCTGTTCCT Meleagris_gallopavo GAAAGGTGCATCTCC-AATGCTGAGCATGAGGATGGGGGTTCCTGTTCCT Phasianus_colchicus GAAAGGTGCATCCCCCACTGCTGAGCATGAGGATGGGGGTTCCTGTTACG Pucrasia_macrolopha GAAAGGTGCATCCCCCACTGCTGAGCATGAGAATGGGGGTTCCTGTTCCT Syrmaticus_reevesii GAAAGGTGCATCCCCCACTGCTGAGCATGAGGATGGGGCTTCCTGTTACT Tetraophasis_szechenyii GAAAGGTGCATCCCCCACAGCTGAGCATGAAGATGGGGGTTCCTGTTCCT Tragopan_temminckii AAAAGGTGCATCCCCCACTGCTGAGCATGAGGATGGGGGTTCCTGTTCCT Arborophila_ardens GAAAGGTGCATCCCCCACTGCTGAGCACGAGGATGGGGGCTTCTGTTCC- Arborophila_brunneopectus GAAAGGTGCATCCCCCACTGCTGAGCACGAGGATGGGGGCTTCTGTTCC- Gallus_gallus GAAAGGTGCATCCCCCACTGCTGAGCACGAGGATGGCGGTTCCTGTTCCC Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus ---------CTCGCCCCCCGTCTCCATCCCATGGGACCACCCAGAGCAGC Chrysolophus_amherstiae ACCACCAGCCTCGTCCCGTGTGTCCATCCCATGCGACTGCCCAGACCAGC Lophophorus_lhuysii ACCACCAGCCTCGTCCCATGTGTCCATCCCATGCGA-TGCCCAGACCAGC Meleagris_gallopavo ACCACCAGCCTCGTCCCGTGTGCCCATCCCATGCGACTGCCCAGACCAGC Phasianus_colchicus ACCACCAGCCTCGTCCCGTGTGTCCATCCCTTGTGACTGCCCAGACCAGC Pucrasia_macrolopha ACCAGCAGCCTCATCCCGTGTGTCCATCGCGTGTGACTGCCCAGACCAGC Syrmaticus_reevesii ACCACCAGCCTCATCCCGTGTGTCCATCCCATGTGACTGCCCAGACCAGC Tetraophasis_szechenyii ACCACCAGCCTCGTCCCATGTGTCCATCCCATGCGA-TGCCCAGACCAGC Tragopan_temminckii ACCACCAGCCTCGTCCCATGTGTCCATCCCATGCGACTGCCCAGACCAAC Arborophila_ardens ---------CTCGTCCTCCGTGTCCATCCCATGGGACCACCCAGACCAGC Arborophila_brunneopectus ---------CTCGTCCTCCGTGTCCATCCCATGGGACCACCCAGACCAGC Gallus_gallus ACCACCAGCCTCATCCTGTGTGTCCATCCCATGGGACCGCCCAGACCAAC Anas_platyrhynchos ---------CTTGTCCTGCACACCCACCCCAGG----------------- Arborophila_rufipectus CCCACCTACCGGCAGCAAAGGGGTTAAAAGGCTTCACTGCTCCTTTTAGA Chrysolophus_amherstiae CCTACTGACCGGCAGCAAAGGGGTTAAAAGGCCTCACTGCTCCTTTTAGA Lophophorus_lhuysii CCCACTGACCGGCAGCAAAGGGGTTAAAAGGCCTCACTGCTCCTTTTAGA Meleagris_gallopavo CCTACTGACCAGCAGCAAAGGGATTAAAAGGCCTCACTGCTCCTTTTAGA Phasianus_colchicus CCTACTGACTGGCACCAAAGGGGTTAAAAGGCCTCACTGCTCCTTTTAGA Pucrasia_macrolopha TCTACTGATCAGCAGCAAAGGGGTTAAAAGGCCTCGCTGCTCCTTTTAGA Syrmaticus_reevesii CCTACTGACCGGCAGCAAAGGGGTTAAAAGGCCTCACTGCTCCTTTTAGA Tetraophasis_szechenyii CCCACTGACCAGCAGCAAAGGGGTTAAAAGGCCTCACTGCTCCTTTTAGA Tragopan_temminckii CCCACTGACCGGCAGCAAAGGGGTTAAAAGGCCTCACTGCTCCTTTTAGA Arborophila_ardens CCCACCTACCGGCAGCAAAGGGGTTAAAAGGCTTCACTGCTCCTTTTAGA Arborophila_brunneopectus CCCACCTACCGGCAGCAAAGGGGTTAAAAGGCTTCACTGCTCCTTTTAGA Gallus_gallus CCCACTGAGCAGCAGCAAAGGGGTTAAAAGGCCTCGCTGCTCCTTTCAGA Anas_platyrhynchos ----CCGGCCAGCAGGGAAGGGGCTGAAATGCCTTACTGCTCCTTTGAGA Arborophila_rufipectus TCTGGGCTGCACTTATTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Chrysolophus_amherstiae TCCGGGCTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGGTTTT Lophophorus_lhuysii TCTGGGCTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Meleagris_gallopavo TCTGGGCTGCACTCGTTTGCAGGCTGAATTTCCCAGAAGTCGTGGCTTTT Phasianus_colchicus CCCGGGCTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Pucrasia_macrolopha TCTGGGCTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Syrmaticus_reevesii TCCGGACTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Tetraophasis_szechenyii TCTGGGCTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Tragopan_temminckii TCTGGGCTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Arborophila_ardens TCTGGGCTGCACTTATTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Arborophila_brunneopectus TCTGGGCTGCACTTATTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Gallus_gallus TCTGGGCTGCACTTGTTTGCAGGCTGAATTTCCCAGAAGTCATGGCTTTT Anas_platyrhynchos CCTGGGCTCCACTTGTTTGCAGACTGAATT-CCCAGAAGCCGAGGCTTTT Arborophila_rufipectus TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCTT Chrysolophus_amherstiae TACTAGCGGAACTGCTGTAGAACCATGTTGTTATAGATTGCAAGTCCC-- Lophophorus_lhuysii TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCTT Meleagris_gallopavo TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCTT Phasianus_colchicus TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCT- Pucrasia_macrolopha TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCTT Syrmaticus_reevesii TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCT- Tetraophasis_szechenyii TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCTT Tragopan_temminckii TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGT-CCTT Arborophila_ardens TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTCC--T Arborophila_brunneopectus TACTAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTCC--T Gallus_gallus TACCAGCGGATCTGCTGTAGAACCATGTTGTTATAGATTGCAAGTTCCTT Anas_platyrhynchos TACGAGTGGATCTGCTGTAGAACCATGTTATTATAGATTGCAAGTTCCTT Arborophila_rufipectus AAAGGTCAGATA-CCCAATCACGATATCAACAGCGGACACTGGGACACGG Chrysolophus_amherstiae AAAGGTCAGATAACA-AATACCGACATCAACAGCGGGCACTGGGACACGG Lophophorus_lhuysii AAAGGTCAGATAACACAATACCGACATCAACAGCGGGCACTGGGACACGG Meleagris_gallopavo AAAGGTCAGATAACACAATACCGACATCAACAGCGGGCACTGGGACACGG Phasianus_colchicus AAAGGTCAGATAACACAATACGGGCACTCAT-AGCGGGCCTGGGACACGG Pucrasia_macrolopha AAAGGTCAGATAACACAATACCGACATCAACAGTGGGCACTGGGACACGG Syrmaticus_reevesii AAAGGTCAGATAACACAATACTGGCACTAAC-GCGGGCACTGGGACACGG Tetraophasis_szechenyii AAAGGTCAGATAAC-CAATACCGACATCAACAGCGGGCACTGGGACACGG Tragopan_temminckii AAAGGTCAGATAACACAATACCGACATCAACAGCGGGCACTGGGACACGG Arborophila_ardens AAAGGTCAGATA-CACAATTCCGATATC-ACAGCGGAC-CTGGGACACGG Arborophila_brunneopectus AAAGGTCAGAAA-CACAATTACGATATCAACAGCGGACACTGGGACACGG Gallus_gallus AAAGGTCAGATAACACAATACCGACATCAACAGCGGGCACTGGGACACGG Anas_platyrhynchos AAAGGTCAGATAACACAATACCGACATCAACAGCGGGCACTGGGACACGG Arborophila_rufipectus TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAT Chrysolophus_amherstiae TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Lophophorus_lhuysii TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Meleagris_gallopavo TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Phasianus_colchicus TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Pucrasia_macrolopha TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Syrmaticus_reevesii TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Tetraophasis_szechenyii TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Tragopan_temminckii TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATCGAC Arborophila_ardens TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACTCTCATCGAT Arborophila_brunneopectus TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACTCTCATCGAT Gallus_gallus TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTTATCGAC Anas_platyrhynchos TGCTGCAGGCCATACAGTCGCTGAAGCTGCCCGACAAGACCCTCATTGAC Arborophila_rufipectus CTTTATGAGCAGGTGGGCAGCATGAGCAGCATGCGACCTTCTCTAGGCCT Chrysolophus_amherstiae CTCTACGAGCAGGTGGGCAGCACGAGCAGCGTGTGACTTTCTCTAGGCCT Lophophorus_lhuysii CTCTACGAGCAGGTGGGCAGCACGAGCAGCGTGCGGCTTTCTCTAGGCCT Meleagris_gallopavo CTGTACGAGCAGGTGGGCAGCACGAGCAACGTGCGACTTTCTCTAGGCCT Phasianus_colchicus CTCTACGAGCAGGTGGGCAGCACGAGCAGCGTGTGGCTTTCTCTAGGCCT Pucrasia_macrolopha CTCTACGAGCAGGTGGGCGGCATGAGCGGCGTGCAACTTTCTATAGGCCT Syrmaticus_reevesii CTCTACGAGCAGGTGGGCAGCACGAGCAGCGTGCGACTTTCTCTAGGCCT Tetraophasis_szechenyii CTCTACGAGCAGGTGGGCAGCACGAGCAGCGTGCGACTTTCTCTAGGCGT Tragopan_temminckii CTCTACGAGCAGGTGGGCAGCACGAGCAGCGTGCGACTTTCTCTAGGCCT Arborophila_ardens CTTTATGAGCAGGTGGGCAGCATGAGCAGCATGCGACCTTCTCTAGGCCT Arborophila_brunneopectus CTTTATGAGCAGGTGGGCAGCATGAGCAGCATGCGACCTTCTCTAGGCCT Gallus_gallus CTCTACGAGCAGGTGGGCAGCACGAGCAGCGTGCGACCTTCTCTAGGCCT Anas_platyrhynchos CTCTACGAGCAGGTGGGCAGCAAGAGCCGCTTCCGACGAACTTATGCTCT Arborophila_rufipectus CTTCTGCTTTAAACGTGTTCTC--ATAGAACCTTTTGTAGGCGCTTCTGA Chrysolophus_amherstiae CTTCTGTTTTGCACGTGTTCTCTTATAGAACCTTTTATCGGCTCTTCTGT Lophophorus_lhuysii CTTCTGCTTTACCCGTGCTCTCTTATGGAACCTTTTATCGGCTCTTCTGA Meleagris_gallopavo CTTCTGCTTTACACGTGCTCTCTTATAGAACCTTTTATCGGCTCATCTGA Phasianus_colchicus CTTCTGTTTTGCACGTGTTCTCTTATAGAACCTCTTATCGGCTCTTCTGA Pucrasia_macrolopha CTTCTCCTTCACATGTGCTCTCTTATAGAACCTTTTATCGGCTCTTCTGA Syrmaticus_reevesii CTTCTGCTTTACACGTGTTCTCTTATAGAACCTCTTGTTGGCTCTTCTGA Tetraophasis_szechenyii CTTCTGCTTTACCCGTGCTCTCTTGTAGAACCTTTTATTGGCTCTTCTGA Tragopan_temminckii CTTCTGCTTTACACGTGTTCTCTTATAGAACCTCTTATCGGCTCTTCTGA Arborophila_ardens CTTCTGCTTTAAACGTGCTCTCTTATAGAGCCTTTTATAGGCGCTTCTGA Arborophila_brunneopectus CTTCTGCTTTAAACGTGCTCTCTTATAGAGCCTTTTATAGGCGCTTCTGA Gallus_gallus TTTCTACTTTACATGTGCTCTCTTCTAGAGCCTTTTATAGGCTCTTCTGA Anas_platyrhynchos ATACTTCTTGCTGAGTGATCTCAATTAGACCCTGTTCTAGGCCCTTCTGC Arborophila_rufipectus GCTGGAAGGGACTC------------------------TGGGCCC----- Chrysolophus_amherstiae GCTGGAAGGGACTCACAGGCACCACTGAGTCCAACCTCTGGCTTCACACA Lophophorus_lhuysii GCCGGAAGGGGCTCACAGGCACCACTGAGTCCAACCTCTGGCTCCACACA Meleagris_gallopavo GCTGGGAGGGACTCACAGGCACCA---------ACCTCTGGCTCCACACA Phasianus_colchicus GCTGGAAGGGTCTCACTGGCACCACTGAGTCCAACCTCAGGCTCCATGCA Pucrasia_macrolopha GCTGGAAGAGACTCACAGACGCCACTGAGTCCAACCTCTGGCTCCACACA Syrmaticus_reevesii GCTGGAAGGGACTCACAGGCACCACTGAGTCCAACCTCTGGCTCCACGCA Tetraophasis_szechenyii GCTGGAAGGGACTCA--GGCACCACTGAGTCCAACCTCTGGCTCCACACA Tragopan_temminckii GCTGGAAGGGACTCACGGGCACCACCGAGTCCAACCTCTGGTTGCGCACA Arborophila_ardens GCTGGAAGGGACTC------------------------TGGGTGC----- Arborophila_brunneopectus GCTGGAAGGGACTC------------------------TGGGTGC----- Gallus_gallus GCTGAATGGGACTCA----------------------------------- Anas_platyrhynchos GCGGGTTGTGCCTC------------------------------------ Arborophila_rufipectus ----------------------TTCTGAGCTGGAAGGG------------ Chrysolophus_amherstiae GAATCACAGAATG---------GCCCGGGTTGGAAGGGACCTCGAGGATC Lophophorus_lhuysii GAATCACAGAATGGCACAGAGTGGGTCGGATGGAAGGGACCTCAAGGATC Meleagris_gallopavo GAATCGCAGAATG---------GCCAGGGTTGGAAGGGACCTCAAGGATC Phasianus_colchicus GAATCACAGAATG---------GTCAGGGTTGGAAGGGACCTCGAGGATG Pucrasia_macrolopha GAATCATGGAATG---------GCCCGGGTTGGAAGAGATCTCAAGGATG Syrmaticus_reevesii GAATCACAGAACG---------GTCAAGGTTGGAAGGGACCTCGAGGATG Tetraophasis_szechenyii GAATCACAGAATGGCCCAGAATGGGTCGGATGGAAGGAACCTCAAGGATC Tragopan_temminckii GAATCACAGAAT----------GGGTTGGATGGAAGGAACCTCAAGGATC Arborophila_ardens ----------------------GTCTGAGCTGGAAGGG------------ Arborophila_brunneopectus ----------------------GTCTGAGCTGGAAGGG------------ Gallus_gallus ---------------------------------CAGG------------- Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus -------------------------------------------------- Chrysolophus_amherstiae ACGAATCTCCAACCTCCCTGCCACACGCAGGGCCACCAACCTCCACATTT Lophophorus_lhuysii GTGAATCTCCAACCCCC-TGCCACATGCAGGGCCACCAACCTCCACATTT Meleagris_gallopavo ACGAATCTCCAACC-CCCTCCCGCGTGCAGGGCCGCCAACCTCTGCATTT Phasianus_colchicus ATGAA---------------------------CCACCAACCTCCACATTA Pucrasia_macrolopha ATGAATCTCCAACC-CCCTGCCACGTGCAGGGCCACCAACCTC-ACATTT Syrmaticus_reevesii ATGAATCTCCAACC-CCCTGCCACATGCAGGGCCACCAATCTCCACATTT Tetraophasis_szechenyii GTGAATCTCCAACCCCCCTGCCACATGCAGGGCCACCAACCTCCACATTT Tragopan_temminckii ATGAATCTCCAACC---------------------------TCCACATTT Arborophila_ardens -------------------------------------------------- Arborophila_brunneopectus -------------------------------------------------- Gallus_gallus -------------------------------------------------- Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus --CACCA------------CTGAGTCCTACC---TCTGGCTCTG------ Chrysolophus_amherstiae CATAGCAGCCCAGGCTGCCCAGGGCCCCATCCAACCTGGCCTTGAACACC Lophophorus_lhuysii AATACTAGACCAGGCTGTCCAGGGCCCCATCCAACCTGGCCTTGAACACC Meleagris_gallopavo CATAA--------------CAGGGCCCCATCCAACCCGGCCTTGAACACC Phasianus_colchicus -ATACCAGCCCAGGCTGCCCAGGGCCCCATCCAACCTGGCCTTGAACACC Pucrasia_macrolopha AACACCAGCCCAGGCTGCCCAGGTCTCCATCCAGCCTGGCCTTGAACACC Syrmaticus_reevesii CATAGCAGCCCAGGCTGCCCAGGGCCCCATCCAATCTGGCCTTGAACGCC Tetraophasis_szechenyii CATACCAGCCCAGGCTGCCCGGGGCCCCATCCAACCTGGCCTTGAACACC Tragopan_temminckii AATACTAGACCAGGCTGCCCAGGGCCCCATCCAGCCTGGCCTTGAACACC Arborophila_ardens --CACCA------------CAGAGTCCTACC---TCTGGCTCCG------ Arborophila_brunneopectus --CACCA------------CAGAGTCCTACC---TCTGGCTCTG------ Gallus_gallus --CACTG------------CTGAGTCCAACC---TCTGGCTCCA------ Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus -------------------------------------------------- Chrysolophus_amherstiae TCCAGGGATGGACGGGGCATCCACAGCCTCTCTGGGCAGCTGTTCCAGCA Lophophorus_lhuysii TCCAGGGATGGACGGGGCATCCACAGCCTCCCTGGGCAGCTGTTCCAGCA Meleagris_gallopavo TCCAGGGATGGACGGGGCATCCACAGCCTCTCTGGGCAGCTGTTCCAGCA Phasianus_colchicus TTCAGGGACAG----GGCATCCACAGCCTCTCTGGGCAGCTGTTTCAGCA Pucrasia_macrolopha TCCAGGGATGGACGGGGCATCCACAGCCTCTCTGGGCAGCTGTT-CAGCA Syrmaticus_reevesii TCCAGGGATGGACA-GGCATCCACAGCCTCTCCGGGCAGCTGTTCCAGCA Tetraophasis_szechenyii TCCAGGGATGG----GGCATCCACAGCCTTCCTGGGCAGCTGTTTCAGCA Tragopan_temminckii TCCAGGGATAGACGGGGCATCCACAACCTCCCTGGGCAACTGTTCCAGCA Arborophila_ardens -------------------------------------------------- Arborophila_brunneopectus -------------------------------------------------- Gallus_gallus -------------------------------------------------- Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus ---------------------------------CACAGAACCACCCAAAA Chrysolophus_amherstiae CCTCACCACTCTCTCTGTAAAGAACTTAGAACACACAGAACCACTTAAAA Lophophorus_lhuysii CCTCACCAC-CTCACAGTAAAGAACTGAGAACACACAGAACCACCTAAAA Meleagris_gallopavo CCTCACCACTCTCTCTGTAAAGAACTAAGAACACACAGAACCACCTAAGA Phasianus_colchicus CCTCACCACTCTCACAGTAAAGAACTTAGAACACAAAGAACCACCTAAAA Pucrasia_macrolopha CCTCACCACTCTCTCTGTAAAGAACTTAGAACACACAGAACCACCTAAAA Syrmaticus_reevesii CCTCACCACTCTCATAGTAAAGAACTTAGAACACACAGAACCACCTAAAA Tetraophasis_szechenyii CCTCACCAC-CTCACAGTAAAGAACTTAGAACACACAGAACCACCTAAAA Tragopan_temminckii CCTCACCAC-CTTATAGTAAAGAACTTAGAAGACGCACAACCACCTAAAA Arborophila_ardens ---------------------------------CCCAGAACCACCCAAAA Arborophila_brunneopectus ---------------------------------CCCAGAACCACCCAAAA Gallus_gallus ---------------------------------CACAGAACCAGCCAAAG Anas_platyrhynchos -------------------------------------------------- Arborophila_rufipectus ACCAAACTCTGCATCTGAGCATTGTGAGGGTGCTCCTTTAGTTCCAGCAG Chrysolophus_amherstiae ACCAAACTTTGCATCTGAGCATC-TGAG-ATGCTCCTTTAGTTCCAGCAG Lophophorus_lhuysii ACCAAACTGTGCGTCTGAGCATTGTGAGGATGCTTCTTTGGTTCCAGCAG Meleagris_gallopavo ACCAAACTGTGTGTCTGAGCATTGTGAGGATGCTCCTTTAGTTCCAGCAG Phasianus_colchicus ACCAAACTTTGCATCTGAGCATTGTGAGGATGCTCCTTTAGTTCCAGCAG Pucrasia_macrolopha ACCAAACTGTGTGTCTGAGCATTGTGAAGATGCTCTTTTAGTTCCAGCAA Syrmaticus_reevesii ACCAAACTTTGCATCTTAGCATC-TGAG-ATGCTCCTTCACTTCCAGCAG Tetraophasis_szechenyii ACCAGACCGTGCGTCTGAGCATTGTGAGGATGCTCTTGTAGTTCCAGCAG Tragopan_temminckii ACCAAACTGTGCGTCTGAGCATTGTGAGGATGCTCCTTTAGTTCCAGCAG Arborophila_ardens ACCAAGCTCTGCATCTGAGCATTGTGAGGGTGCTCCTTTAGTTCCCGCAG Arborophila_brunneopectus ACCAAGCTCTGCATCTGAGCATTGTGAGGGTGCTCCTTTAGTTCCAGCAG Gallus_gallus ACTAAAC--TGCATCTGAGCATTGTGAGGATGCTCCTTTAGTTCCAGCAG Anas_platyrhynchos -----------------------------ATGCTACTCGAATTCCAGCAG Arborophila_rufipectus CTTGTGGCTACGCCTGCTGCTCTGGGGAGCCTGTTCCATGCTCACCAACC Chrysolophus_amherstiae CTTGTGGCTTTGCCTACTG-----GGGAGCCTGTTCCATGCTCGCTGACC Lophophorus_lhuysii CTTCTGGCTGTGCCTGCTGCCCTGGGGAGCCCGTTCCGTGCTCACTGTCC Meleagris_gallopavo CTTGTGGCTGTGCCTGCTGCCCTGGGGAGCCCGTTCCATGCTCACTTACC Phasianus_colchicus CTTGTGGCTTTGCCTACTG-----GGGAGCCCGTTCCATGCTCACTGACC Pucrasia_macrolopha TTTGTGGCTGTGCCTACTGCCATGGGGAGCCTGTTCCATGCTCACTGATC Syrmaticus_reevesii CTTGTGGCTTTGCCAACTG-----GGGAGCCTGTTCCATGCTCGCTGACC Tetraophasis_szechenyii CGTGTGGCTGTGCCTACTGCCCTGGGGAACCCGTTCCATGCTCACTGTCC Tragopan_temminckii CTTGTGGCTGTGCCTACTGCCCAGAGGAGCCCGTTCCATGCTCACTGACC Arborophila_ardens CTTGTGGCTATGCCTGCTGCTATGGGGAGCCTGTTCCCTGCTCACCAACC Arborophila_brunneopectus CTTGTGGCTATGCCTGCTGCTATGGGGAGCCTGTTCCATGCTCACCAACC Gallus_gallus CTTGTGGCTGTGCCTACTGCCCTGGGGAGCCTGTTCCATGCTCACCAACC Anas_platyrhynchos CTCAGTGCTCTGCCCCCT--CATGGGGAACCTACCCCATGCCCACCACGC Arborophila_rufipectus GCTGGTAAAGAATGTTTTTCTAACCCCCAACTCTGCCCTCCCTCATGGTT Chrysolophus_amherstiae TCTGGTGAAGAATGTTTTCCTGACCCCCAACTCTGCCATCCCTCATGGTT Lophophorus_lhuysii TCTGGTGAAGAATGTTTTCCTAACCCCCAACTCTGCCCTCCCTCATGGTT Meleagris_gallopavo TCTGGTGAAGAATGTTTTCCTAACCCCCAACTCTCCTTTCCCTCGTGGTT Phasianus_colchicus TCTGGTGAAGAAAGTTTTCCTGACCCCCAACTCTGCCCTCCCTCATGGTT Pucrasia_macrolopha TCTGGTGAAGAATGTTTTCCTGACCCCCAACTCTACCCTCCCTCATGGTT Syrmaticus_reevesii TCTGGTGAAGAATGTTTTCCTGACCCCCAACTCTACCCTCCCTCATGGTT Tetraophasis_szechenyii TCTGGTGAAGAATGTTTTCCTAACCCCCAACTCTGCCCTCCCTTATGGTT Tragopan_temminckii TCTGGTGAAGAATGTTTTCCTAACCCCTAACTCTGCCCTCCCTCATGGTT Arborophila_ardens TCTGGTGAAGAATGTTTTTCTGACCCCCAACTCTGCCCTGTCTCATGGTT Arborophila_brunneopectus TCTGGTGAAGAATGTTTTTCTGACCCCCAACTCTGCCCTCTCTCATGGTT Gallus_gallus TCTGGTGAAGGACATTTTACTAACCCCAAGCTCTACCCTCCCTCATGGTT Anas_platyrhynchos TCTGG--GTGCAGATTTTCCTAACCCCGAGCCCTGCCCGCCCCACTGGTT Arborophila_rufipectus TATCTGTGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Chrysolophus_amherstiae CATCTTCGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Lophophorus_lhuysii CATCTTTGCTGATGCAGATACTAATCCCTTGTTGCAGGTTGTGCTGGAGC Meleagris_gallopavo CATCTTTGCTGATGCAGATGCTAATCCCTTGTCGTAGGTTGTGCTGGAGC Phasianus_colchicus CATCTTTGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Pucrasia_macrolopha CATCTTTGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Syrmaticus_reevesii CATCTTCGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Tetraophasis_szechenyii CATCTTTGCTGATGC------TAATCCCTTGTTGCAGGTTGTGCTGGAGC Tragopan_temminckii CATCTTTGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Arborophila_ardens TATCTGTGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Arborophila_brunneopectus TATCTGTGCTGATGCAGATGCTAATCCCTTGTTGCAGGTTGTGCTGGAGC Gallus_gallus CATCTTTGCTGATGCAGATGCTAATCCCTCGTTGCAGGTTGTGCTGGAGC Anas_platyrhynchos AAACTGTGCTGATGCAGAT--TAATCCCT----GCAGGTCGTGCTGGAGC Arborophila_rufipectus TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Chrysolophus_amherstiae TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Lophophorus_lhuysii TGATTGAGCTCCGGGAGCTGGGGGCTGCCAGATCCCTCCTCAGGCAGACA Meleagris_gallopavo TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAAACA Phasianus_colchicus TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Pucrasia_macrolopha TGATTGAGCTCCGCGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Syrmaticus_reevesii TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Tetraophasis_szechenyii TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Tragopan_temminckii TGATTGAGCTCCGGGAGTTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Arborophila_ardens TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Arborophila_brunneopectus TGATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Gallus_gallus TAATTGAGCTCCGGGAGCTGGGTGCTGCCAGGTCCCTCCTCAGGCAGACA Anas_platyrhynchos TTATCGAGCTGCGGGAGCTGGGTGCTGCCCGCTCCCTGCTGAGGCAGACG Arborophila_rufipectus GATCCCATGATCATGCTAAAACAGACCCAGCCAGAGCGGTACATCCACCT Chrysolophus_amherstiae GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Lophophorus_lhuysii GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Meleagris_gallopavo GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Phasianus_colchicus GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Pucrasia_macrolopha GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Syrmaticus_reevesii GATCCGATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Tetraophasis_szechenyii GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Tragopan_temminckii GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATTCACCT Arborophila_ardens GATCCCATGATCATGCTAAAACAGACCCAGCCAGAGCGGTACATCCACCT Arborophila_brunneopectus GATCCCATGATCATGCTAAAACAGACCCAGCCAGAGCGGTACATCCACCT Gallus_gallus GATCCCATGATCATGCTGAAGCAGACTCAGCCAGAGCGGTACATCCACCT Anas_platyrhynchos GATCCCATGATCATGCTGAAGCAGACACAGCCAGAGCGGTACATCCACCT Arborophila_rufipectus CGAAAACCTTCTGGCTAGATCTTACTTT Chrysolophus_amherstiae TGAAAACCTTCTGGCCAGATCTTACTTT Lophophorus_lhuysii TGAAAACCTTCTGGCCAGATCTTACTTT Meleagris_gallopavo TGAAAACCTTCTGGCCAGATCTTACTTT Phasianus_colchicus TGAAAACCTTCTG-CCAGATCT-ACTGA Pucrasia_macrolopha TGAAAACCTTCTGGCCAGATCTTACTTT Syrmaticus_reevesii TGAAAACCTTCTG-CCAGATCT-ACTTA Tetraophasis_szechenyii TGAAAACCTTCTGGCCAGATCTTACTTT Tragopan_temminckii TGAAAATCTTCTGGCCAGATCTTATTTT Arborophila_ardens CGAAAACCTTCTGGCTAGATCTTACTTT Arborophila_brunneopectus CGAAAACCTTCTGGCTAGATCTTACTTT Gallus_gallus TGAAAACCTTCTGGCCAGATCTTACTTT Anas_platyrhynchos GGAAAACCTTCTGGCCAGGTCTTACTTT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 4728; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 4728; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 4728; END; BEGIN TREES; Title 'Trees from "7CR1TS.con"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Arborophila_rufipectus, [1] 2 Chrysolophus_amherstiae, [2] 3 Lophophorus_lhuysii, [3] 4 Meleagris_gallopavo, [4] 5 Phasianus_colchicus, [5] 6 Pucrasia_macrolopha, [6] 7 Syrmaticus_reevesii, [7] 8 Tetraophasis_szechenyii, [8] 9 Tragopan_temminckii, [9] 10 Arborophila_ardens, [10] 11 Arborophila_brunneopectus, [11] 12 Gallus_gallus, [12] 13 Anas_platyrhynchos; TREE con_all_compat = (13:0.1780795,((1:0.0131,(10:0.002835,11:0.002459)1.00:0.011892)1.00:0.054587,(12:0.050585,((9:0.032107,(3:0.020828,8:0.024992)1.00:0.004213)1.00:0.005973,((4:0.032024,6:0.03668)0.99:0.003834,(2:0.015476,(5:0.021659,7:0.016961)1.00:0.005448)1.00:0.018157)1.00:0.002272)1.00:0.015481)0.97:0.010646):0.1780795); TREE con_all_compat = (13:0.1780795,((1:0.0131,(10:0.002835,11:0.002459):0.011892):0.054587,(12:0.050585,((9:0.032107,(3:0.020828,8:0.024992):0.004213):0.005973,((4:0.032024,6:0.03668):0.003834,(2:0.015476,(5:0.021659,7:0.016961):0.005448):0.018157):0.002272):0.015481):0.010646):0.1780795); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1453784725014; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 9045057191693017454; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6457552611815269697; mqVersion 304; checksumv 0 3 2791374431 null getNumChars 4728 numChars 4728 getNumTaxa 13 numTaxa 13 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 1229669.0 sumSquares -1.383505805528214E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 650; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #9045057191693017454 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #9045057191693017454; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #9045057191693017454 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 5819.1453546279217.2659683093969120674; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6457552611815269697 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 578; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;