#NEXUS [written Wed Jan 27 15:45:18 CET 2016 by Mesquite version 3.04 (build 725) at Rafael-PC/150.214.58.196] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=60; TAXLABELS Arabidopsis_thaliana_COMT1 Arabidopsis_thaliana_AT1G33030.1 Arabidopsis_thaliana_AT3G53140.1 Arabidopsis_thaliana_AT1G21100.1 Arabidopsis_thaliana_AT1G21110.1 Arabidopsis_thaliana_AT1G21120.1 Arabidopsis_thaliana_AT1G21130.1 Arabidopsis_thaliana_AT1G76790.1 Arabidopsis_thaliana_AT5G37170.1 Arabidopsis_thaliana_AT1G77520.1 Arabidopsis_thaliana_AT1G77530.1 Arabidopsis_thaliana_AT1G51990.1 Arabidopsis_thaliana_AT5G53810 Arabidopsis_thaliana_AT4G35160.1 Arabidopsis_thaliana_AT3G62000.1 Arabidopsis_thaliana_AT3G61990.1 Arabidopsis_thaliana_AT1G24735.1 Arabidopsis_thaliana_AT1G67980.1 Arabidopsis_thaliana_AT1G67990.1 Arabidopsis_thaliana_AT4G26220.1 Arabidopsis_thaliana_CCoAOMT1 Zea_mays Amborella_trichopoda Selaginella_moellendorffii Medicago_sativa Glycine_max Liquidambar_styraciflua Populus_trichocarpa_Potri.012G00 Populus_trichocarpa_Potri.015G00 Oryza_sativa Brachypodium_distachyon_Bradi3g1 Brachypodium_distachyon_Bradi1g1 Sphagnum_fallax_Sphfalx0189s0021 Sphagnum_fallax_Sphfalx0052s0034 Physcomitrella_patens Ginkgo_biloba Pinus_pinaster_PpOMT1 Pinus_pinaster_PpOMT2 Pinus_pinaster_PpOMT3 Pinus_pinaster_PpOMT4 Pinus_pinaster_PpOMT5 Pinus_pinaster_PpOMT6 Pinus_pinaster_PpOMT7 Pinus_pinaster_PpOMT8 Pinus_pinaster_PpOMT9 Pinus_pinaster_PpOMT10 Pinus_pinaster_PpOMT11 Pinus_pinaster_PpOMT12 Pinus_pinaster_PpOMT13 Pinus_pinaster_PpOMT14 Pinus_pinaster_PpOMT15 Pinus_pinaster_PpOMT16 Pinus_pinaster_PpOMT17 Pinus_pinaster_PpOMT18 Pinus_pinaster_PpOMT19 Pinus_pinaster_PpOMT20 Pinus_pinaster_PpOMT21 Pinus_pinaster_PpOMT22 Pinus_pinaster_PpOMT23 Pinus_pinaster_PpOMT24 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "OMT_Alin_D_nexus"'; DIMENSIONS NCHAR=449; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = ?; MATRIX Arabidopsis_thaliana_COMT1 --------------------------MGSTAETQLTP--VQVTDDEAALFAMQLASASVLPMALKSALELDLLEIMAKN- Arabidopsis_thaliana_AT1G33030.1 -----------------------------------------MEEQNLSSYAMILSSSSVLPMVLKTAIDLGLFDILAESG Arabidopsis_thaliana_AT3G53140.1 -----------------------------------MENESSESRNRARLAIMELANMISVPMSLNAAVRLGIADAIWNGG Arabidopsis_thaliana_AT1G21100.1 ------------------MGYLFQETLSSNPKTPIVVD----DDNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAAA Arabidopsis_thaliana_AT1G21110.1 ------------------MGYLFEETLSSNPKTPIVVD----DDNELGLMAVRLANAAAFPMVLKASLELGVFDTLYAEA Arabidopsis_thaliana_AT1G21120.1 ------------------MGYLFEETLSSNPKTPIVVD----DDNELGLMAVRLANAAAFPMVLKASLELGVFDTLYAEA Arabidopsis_thaliana_AT1G21130.1 ------------------MGYLLEETLSSNSKTPIVID----DDNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAEA Arabidopsis_thaliana_AT1G76790.1 ----------------------------MGHLIPQTGD----EETELGLAAVRLANCAAFPMVFKAAIELGVIDTLYLAA Arabidopsis_thaliana_AT5G37170.1 ------------------MTNHHQESLTTYPKPGPTREQEQVDEEMMSMQMQALR-----------------ITNSLAFP Arabidopsis_thaliana_AT1G77520.1 ------------------MTNHLQDPLPTYPKPVLTKEEQEVDEKMVSLQAESIVNTVAFPMVLKAAFELGVIDTIAAAG Arabidopsis_thaliana_AT1G77530.1 ------------------MSNHLQDPLTTYPKPGLTKEEQEIDEKMVSLQAESIVNAVAFPMVLKAALELGVIDTIAAAS Arabidopsis_thaliana_AT1G51990.1 --------------------------------MISLQTSGGSSEEEDMLLAIQLGGLNFVPYIVKTARELDLFEIMAKAR Arabidopsis_thaliana_AT5G53810 ------------------MANHLQVPLT---KPDRVKEEQEVEEEARLLARRLANAAASPMVLKAALELGVIDTITTVGG Arabidopsis_thaliana_AT4G35160.1 ------------------MSSDQLSKFLDRNKMEDNKRKVLDEEAKASLDIWKYVFGFADIAAAKCAIDLKIPEAIENHP Arabidopsis_thaliana_AT3G62000.1 -----------------------MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKFSRRLIGNCSIAPADPYVVADDD Arabidopsis_thaliana_AT3G61990.1 -------MTTFSTSFLFLLLVFCLIGSLAADDLQHKSGRDVCSGGSDLRTPDIRLNRPTDSVVGNCPTEAS-PLVMADDE Arabidopsis_thaliana_AT1G24735.1 -----------------------------------------------------------MEKLLPPSKLLPPKGILKSDA Arabidopsis_thaliana_AT1G67980.1 -----------------------------------------------------------------MANEIPTKGILKSEA Arabidopsis_thaliana_AT1G67990.1 -----------------------------------------------------------------MDGRLPDKGILKSEA Arabidopsis_thaliana_AT4G26220.1 ------------------------------------------------------------------MAKDEAKGLLKSEE Arabidopsis_thaliana_CCoAOMT1 ----------------------------------------MATTTTEATKTSSTNGEDQKQSQNLRHQEVGHKSLLQSDD Zea_mays -------------------------------MGSTAGDVAAVVDEEACMYAMQLASSSILPMTLKNAIELGLLEVLQKEA Amborella_trichopoda -----------------------------MGSVGPEP----LTEEDCCHYAMQLASSSILPMTLKAAIELDVLEIIAAAG Selaginella_moellendorffii ----------------------------------MGSAGGVIVEDEDRLQIMELATMCSVPMALKVAVEMDVAERIEKAG Medicago_sativa --------------------------MGSTGETQITP--THISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAG Glycine_max --------------------------MGSTGETQITP--THVSDEEANLFAMQLASASVLPMVLKSALELDLLEIIAKAG Liquidambar_styraciflua --------------------------MGSTSETKMSPSEAAAAEEEAFVFAMQLTSASVLPMVLKSAIELDVLEIMAKAG Populus_trichocarpa_Potri.012G00 --------------------------MGSTGETQMTP--TQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAG Populus_trichocarpa_Potri.015G00 --------------------------MGSTGETQMSP--AQILDEEAN-FAMQLISSSVLPMVLKTAIELDLLEIMAKAG Oryza_sativa -------------------------------MGSTAADMAAAADEEACMYALQLASSSILPMTLKNAIELGLLETLQSAA Brachypodium_distachyon_Bradi3g1 -------------------------------MGSTAADMAATADEEACMFALQLASSSILPMTLKNAIELGLLDTLVQAS Brachypodium_distachyon_Bradi1g1 --------------------------MGSARTEMVVPGAAGAGDEEACMYALQLAASSILPMTLKNAIELGMLEILVAAG Sphagnum_fallax_Sphfalx0189s0021 --------------MAANGNGYHAHVAKENHPETPLRNGNVGEQDAARDAAMRLSVAGAVPAALKASIELGVFEILAKAG Sphagnum_fallax_Sphfalx0052s0034 ------------MAANSSISDRAQAVPEDDHHATPLRPKTGGEQDAAMFAAMRLTITSPVPAALKAAIELGVFEILAKAR Physcomitrella_patens ----------------MACGEGHDHVGEDVYSTN--QQKATTHIDKVRLAAIELVGQAAIPGTLASLARLNVFEALARAG Ginkgo_biloba --------------------------------MGSMEKGLIIANEEEWVLGMELGNFSCLPMAMKAAVELDVLQIIANAG Pinus_pinaster_PpOMT1 ----------------------------MGSASESSEMNAKIVNEDEWLLGMELGNFSCLPMAMKAAIELDVLQIIANAG Pinus_pinaster_PpOMT2 ----------------------------MGSAFEKSEMNSKIENEDEWLLGMELANLSCLLMAVKAAVELDVLQIIANAG Pinus_pinaster_PpOMT3 ---------------------------MESTTAANSEMNAKIVNEDEWLLGMELGNFSCLPMAMNAAVELDIRQIIANAG Pinus_pinaster_PpOMT4 ----------------------------MGSGFEKSEMNSKIVNEDEWLLGMELGNFSCLPMAMKAAIELDVLQIIANAG Pinus_pinaster_PpOMT5 -------------------------------------MNPKIVNEDEWLLGMEMGNFSCLPMAMKAAIELDVLQIMANAG Pinus_pinaster_PpOMT6 ----------------------------MGSDFEKSEMNSKIVNEDEWLLGMELANLSCLLMAVKAAVELDVLQIIANAG Pinus_pinaster_PpOMT7 ----------------------------MGSAFEKSEMNSKIEDEDEWLLGMELANLSCLLMAVKAAVELDVLQIIANAG Pinus_pinaster_PpOMT8 ----------------------MDCKGNNSTEDNPSADKMEDDEWQGRLAMMELANMLSVPMALNAVAELNVADIIWQNG Pinus_pinaster_PpOMT9 ------------------------------------EMNSKIVNEDEWLLGMELANLSCLLMAVKAAVELDVLQIIANAG Pinus_pinaster_PpOMT10 --------------------MSGLALNNGGAFCTDGFFESEEEELLGQADAWKSTFAFVESLAVKCVVLLGIPDMIAREG Pinus_pinaster_PpOMT11 ---------------------------MGSKMYGDGFFDSEEEELLGQAQAWRSTFAFAESLAVKSAVLLGIPDLIARQG Pinus_pinaster_PpOMT12 --------------MLTLAPPMDSIDHVLA----RHIDSSQESAATQELQLYEMIFSAVKPLALKAAVLLNIPGIISTRG Pinus_pinaster_PpOMT13 ----------------MKGMTMEAPEDVKLLECSAMDILEMNKEAFLQASALRMAFSLANPFLLKCALRLKIPDIIWRAG Pinus_pinaster_PpOMT14 ---MGESSPATPSHCAAMGESSSLFSATSAAASAPDAALQIYTSPSPQLQLYDMIYSLVKPLALKAAVNLDIPDIIATHG Pinus_pinaster_PpOMT15 ------------------------------MEDHDHQLKPPAQDLQLMSPMRDLIFSPIPALFLKSVVLLKIPDIIATAG Pinus_pinaster_PpOMT16 ------------------------------MDRKEYNVQAPPP------PPMDLIFSFAPALALKSAVLLKIPDIIATAG Pinus_pinaster_PpOMT17 -----------------------------------MNMQSVKDEEALRASALGLAFSLETPFLLKCAIRLKIPDIISKAG Pinus_pinaster_PpOMT18 MVAGFPTISGISDWCAMDSNMNGLAMSNGCEISRDGFFESEEEELQGQAEAWKCTFAFAESLAVKCVVLLGIPDMIAREG Pinus_pinaster_PpOMT19 ----------------MAADPMDSIDDVLALATVQHINSSRDPAATHQLQLYEMILSAVKPLALKAAVLLNIPDIIATRG Pinus_pinaster_PpOMT20 ---------------------MESIHHVLAPVTGRNIDSSRESTATQELQLYEMIFSAAKPLALKAAVLLNIPDIIATRG Pinus_pinaster_PpOMT21 --------------MLILAPPMDSIHHVLAPVTGQHIDSSRESASTQELQLYEMIFSAVKPLALKAAVLLNIPDIIATRG Pinus_pinaster_PpOMT22 --------------MLTLSAPMDSIDHVLAPVTGQHIESSRESAATQELQLYEMIFSAVKPLALKAAVLLNIPDIIATRG Pinus_pinaster_PpOMT23 --------------MLTLAPPMDSIDHVLA----RHIDSSQESAATQELQLYEMIFSAVKPLALKAAVLLNIPDIIATRG Pinus_pinaster_PpOMT24 -----------------------------------MDIKAVEGEEVLQGSALSMVFSIVNPFLLKCALRLNIPDIIWKAG Arabidopsis_thaliana_COMT1 -GSPMS------PTEIASKLPTKNP---------EAPVMLDRILRLLTSYSVLTCSNRKL--------SGDGVERIYGLG Arabidopsis_thaliana_AT1G33030.1 PSS---------ASQIFSLLSNETKK-------HHDSSLVNRILRFLASYSILTCSVSTEH---------GEPFAIYGLA Arabidopsis_thaliana_AT3G53140.1 AN------SPLSAAEILPRLHLPSHTTI-----GGDPENLQRILRMLTSYGVFSEHLVGS------------IERKYSLT Arabidopsis_thaliana_AT1G21100.1 SR----TDSFLSPYEIASKLPTTPRN-------PEAPVLLDRMLRLLASYSMVKCGKALS----------GKGERVYRAE Arabidopsis_thaliana_AT1G21110.1 SR----TDSFLSPSEIASKLPTTPRN-------PGAPVLLDRMLRLLASYSMVKCEKVSV----------GKEQRVYRAE Arabidopsis_thaliana_AT1G21120.1 SR----TDSFLSPSEIASKLPTTPRN-------PGAPVLLDRMLRLLASYSMVKCEKVSV----------GKGERVYRAE Arabidopsis_thaliana_AT1G21130.1 SR----SDSFLSPSEIASKLPTTPRN-------PEAPVLLDRMLRLLASYSVVKCGKVSE----------GKGERVYRAE Arabidopsis_thaliana_AT1G76790.1 RDDVTGSSSFLTPSEIAIRLPTKPSN-------PEAPALLDRILRLLASYSMVKCQIID-------------GNRVYKAE Arabidopsis_thaliana_AT5G37170.1 MG------VWLSPSEIAFGLPTKPTN-------PEAPMLIDRMLRLLVSHSILKCRLVETGENN----RTESTQRVYAAE Arabidopsis_thaliana_AT1G77520.1 ND------TWLSPCEIACSLPTKPTN-------PEAPVLLDRMLSLLVSHSILKCRMIETGENG----RTGKIERVYAAE Arabidopsis_thaliana_AT1G77530.1 NG------TWLSPSEIAVSLPNKPTN-------PEAPVLLDRMLRLLVSHSILKCCMVESRENG----QTGKIERVYAAE Arabidopsis_thaliana_AT1G51990.1 PLGSYLS-----PVDLASMAAPKNP---------HAPMMIDRLLRFLVAYSVCTCKLVKD--------EEGRESRAYGLG Arabidopsis_thaliana_AT5G53810 GD------LWLSPSEIALRLPTKPCN-------LEAPALLDRMLRFLVSHSVLKCRTVIE-ENG----QTGKVERVYAAE Arabidopsis_thaliana_AT4G35160.1 SS------QPVTLAELSSAVSASP-------------SHLRRIMRFLVHQGIFKEIPTKD-----GLATG------YVNT Arabidopsis_thaliana_AT3G62000.1 KYG---------NKQVISLTPRLYDY----------VLSNVREPKILRQLREETSKMRG--------------------- Arabidopsis_thaliana_AT3G61990.1 KYG---------NKMVISLTPRLYDY----------VLNNVREHEILKQLREETAIS----------------------- Arabidopsis_thaliana_AT1G24735.1 LKK---------YIFETTAYP--------------------REHEQLKKLREATVLKYGN-------------------- Arabidopsis_thaliana_AT1G67980.1 LKQ---------YIMETSAYP--------------------REHELLKELRKATVQKYGN-------------------- Arabidopsis_thaliana_AT1G67990.1 LKQ---------YIMETTAYP--------------------REHELLKELREATIQRYGN-------------------- Arabidopsis_thaliana_AT4G26220.1 LYK---------YILETSVYP--------------------REPEVLRELRNITHNHP---------------------- Arabidopsis_thaliana_CCoAOMT1 LYQ---------YILETSVYP--------------------REPESMKELREVTAKHP---------------------- Zea_mays GGG----KAALAPEEVVARMPAAPGDP------AAAAAMVDRMLRLLASYDVVRCQMED---------RDGRYERRYSAA Amborella_trichopoda PGALLS------PKDVADKLPTTNP---------EAATMLDRMLRLLASYSVLTSSVSLT--------PDGHPERLYGAA Selaginella_moellendorffii PG------GLLSAAEIVSQIPECSSP--------MSPIYLDRIMRVLASRKIFKEVDEGG-------------VRKYGLT Medicago_sativa PGAQIS------PIEIASQLPTTNP---------DAPVMLDRMLRLLACYNILTCSVRTQ--------QDGKVQRLYGLA Glycine_max PGVHLS------PSDIASRLPTHNP---------DAPVMLDRILRLLACYNILSFSLRTL--------PHGKVERLYGLA Liquidambar_styraciflua PGAHIS------TSDIASKLPTKNP---------DAAVMLDRMLRLLASYSVLTCSLRTL--------PDGKIERLYGLA Populus_trichocarpa_Potri.012G00 PGAFLS------TSEIASHLPTKNP---------DAPVMLDRILRLLASYSILTCSLKDL--------PDGKVERLYGLA Populus_trichocarpa_Potri.015G00 PGALLS------PSDIASHLPTKNP---------DAPVMLDRILRLLASYSILICSLRDL--------PDGKVERLYGLA Oryza_sativa VAGGGGKAALLTPAEVADKLPSKAN--------PAAADMVDRMLRLLASYNVVRCEMEEG--------ADGKLSRRYAAA Brachypodium_distachyon_Bradi3g1 GKS-------LTPAEVAAKLPSSSN--------PAAPDMVDRMLRLLASYGVVSCAVEEG--------ENGKLSRRYAAA Brachypodium_distachyon_Bradi1g1 KTLS--------PSQVAERLQAKPG--------PDAPAMLDRMLRLLASYNVVSCEVEEG--------QEGLLARRYGPA Sphagnum_fallax_Sphfalx0189s0021 EVG-----KSLTAKEIASQVVQPVNGLS-----VINHGYLERILRLLASEDVVSESTVTVANGKTSNSSN--TERCYALQ Sphagnum_fallax_Sphfalx0052s0034 GVG-----KSLTAKEIASQVVQPVSGLS-----VINHGCLERILRLLASENVVSESAVTVESGNSSSYSNRSTERCYALL Physcomitrella_patens DG------VELTPQELGNQAMP----GK-----VINLSYLGRMLRLASSVKVLREVATMSEDGS--------TEHRYGLE Ginkgo_biloba HGAQIS------PREIVTHIPTTN---------PDAAITLDRILRVLASHSVLSSSVTTD--------ENGKTGRVYGLT Pinus_pinaster_PpOMT1 NGVQLS------PRQIVAHIPTTN---------PDAAITLDRILRALASHSVLSCSVTTD--------ENGKAERLYGLT Pinus_pinaster_PpOMT2 NGVQLS------PTQIVAHIPTTN---------PDAAITLDRILRVLASHSVLSCSVTTN--------ENGKAERFYGLT Pinus_pinaster_PpOMT3 NGVQLS------PRKIVSLIPTTNP--------DHAAITLDRILRVLASHSVLSSSVTID--------ESGKAERMYGLT Pinus_pinaster_PpOMT4 NGVQLS------PTQIVGHIPTTN---------PDAAITLDRILRVLASHSVLSCSVTTN--------ENGKAERFYGLT Pinus_pinaster_PpOMT5 NGVQRS------PRQIVAHIPTTN---------PDAAITLDRILRVLASHSVLSCSVTTD--------ENGKAERLYGLT Pinus_pinaster_PpOMT6 NGVQLS------PTQILAHIPTTN---------PDAAITLDRILRVLASHSVLSCTVTTN--------ANAKAERFYGLT Pinus_pinaster_PpOMT7 NGVQLS------PTQIVAHIPTTN---------PDAAITLDRILRVLASHSVLSCTVTTN--------ENAKAERFYGLT Pinus_pinaster_PpOMT8 AN------TPLSASQILSQLQTQSPDSC-----SS-AHNLQRIMRMMASYNVFKESVTEVSNGV--------RERLYSLT Pinus_pinaster_PpOMT9 NGVQLS------PTQIVAHIPTTN---------PDAAITLDRILRVLASHSVLSCSVTTN--------ENGKAERFYGLT Pinus_pinaster_PpOMT10 PR------ATLSLNEIVARLPTESP----------DAACLFRIMRVLVAKGVFRSTVVKGA-DAGACETR------YGLT Pinus_pinaster_PpOMT11 PH------GTLSLREIVARLPREAP----------DASCLFRIMRFLAAKGVFRASVDS---DGGNESAR------YGLT Pinus_pinaster_PpOMT12 NGG------PLSAEQIAFHIAAANSSSTSK--SHVDVGYLYRILRFLASYGVFSEQEEADQ-ADDADTKK----IKFGLT Pinus_pinaster_PpOMT13 PD------SPLSVQQIASQLPSEAP----------DMDALSRILACLSAMGILKAIKPTKD-AQETNGAAEALTMNYTLT Pinus_pinaster_PpOMT14 GGEG----RSLSVEDIASHIAASAPCNTNMNMKAPHMEYLFRLLRYLASYNVFTETSHAG---GAAEFKR----YRYGLT Pinus_pinaster_PpOMT15 PESS----YTLSLREIAARLPSQTP----------HLDYLSRIVRYLSTQGIFIESQTTST-DNPFDFR-------YGLT Pinus_pinaster_PpOMT16 PDPD----SSLSLRQIAARLPTQTP----------HLDYLSRILRYLSTLGIFIESQTSS---DPLDFH-------YGLT Pinus_pinaster_PpOMT17 PD------VFLSVHQIAAQLPSEDP----------DIGALSRILTYLSTMGILQGIVPPEG-VDAP------MNIKYGLT Pinus_pinaster_PpOMT18 PR------ATLSLDEIVAKLPTESP----------DAACLFRIMRFLVAKGIFCASKSAR--EGGAFETR------YGLT Pinus_pinaster_PpOMT19 NGG------PLSVEQIAFHIAAGNSSSTSN--SHVDVGYLHRILRFLASYGVFTEEEEANQ-ADGADLKK----RKYGLT Pinus_pinaster_PpOMT20 NGG------PLSAEQIAFHIAAANSSSTGN--SHVDVGYLYRILRFLASYGVFAEQEEADQ-PDGADTKK----IKFGLT Pinus_pinaster_PpOMT21 NGG------PLSAEQIAFHIAAANSSSSGN--SHLDVGYLYRILRFLASYGVFAEQEEADQ-ADDADTKK----IKFGLT Pinus_pinaster_PpOMT22 NGG------PLSAEQIAFHIAAANSSSTSN--SHVDVGYLYRILRFLASYGVFSEQEEADQ-ADDTDTKK----IKFGLT Pinus_pinaster_PpOMT23 NGG------PLSAEQIAFHIAAANSSSSGN--SHLDVGYLYRILRFLASYGVFAEQEEADQ-ADDTDTKK----IKFGLT Pinus_pinaster_PpOMT24 HD------VSLSVHQIAAQLPSEAP----------DLDALSRILTYLSTMGILRAIEPTEE-INAP------MNMKYALT Arabidopsis_thaliana_COMT1 PVCKYLTKN-----EDGVSIAAMN---QDKVLMESWYHLKDAILDGGIPFNKAYG-----MSAFEYHGTDPRFNKVFNNG Arabidopsis_thaliana_AT1G33030.1 PVAKYFTKN----QNGGGSLAPMVNLFQDKVVTDMWYNLKDSVLEGGLPFNNTHG-----SSAVELVGSDSRFREVFQSS Arabidopsis_thaliana_AT3G53140.1 DVGKTLVTD-----SGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANG----EAAYAQYGKSEEMNGLMQKA Arabidopsis_thaliana_AT1G21100.1 PICRFFLKDNI--QDIG-SLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGG----MKLFDYMGTDERFSKLFNQT Arabidopsis_thaliana_AT1G21110.1 PICRFFLKNNI--QDIG-SLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGG----MKLFDYMGTDERFSKLFNQT Arabidopsis_thaliana_AT1G21120.1 PICRFFLKNNI--QDIG-SLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGG----MKLFDYMGTDERFSKLFNQT Arabidopsis_thaliana_AT1G21130.1 PICRFFLKDNI--QDIG-SLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGG----MKLFDYMGTDERFSKLFNQT Arabidopsis_thaliana_AT1G76790.1 PICRYFLKDNV--DEELGTLASQLIVTLDTVFLNTWGELKNVVLEGGVAFGRANGG----LKLFDYISKDERLSKLFNRT Arabidopsis_thaliana_AT5G37170.1 PDTSEGCD--T--RR-------------------------------KRCIQFCPW-----HGTLRIRCTDEQFAAIFNQA Arabidopsis_thaliana_AT1G77520.1 PVCKYFLR--D--SDGTGSLVPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAHG-----MKIFEYINSDQPFAELFNRA Arabidopsis_thaliana_AT1G77530.1 PICKYFLK--D--SDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHD-----MRLFEYISSDDQFSKLFHRA Arabidopsis_thaliana_AT1G51990.1 KVGKKLIKD-----EDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERANE----ALIFEYMKKNENLKKIFNES Arabidopsis_thaliana_AT5G53810 PVCKYLLNK-S--DDVSGSFASLFMLDLSDVFIKTWTHLEDVILEGRDAFSSAHG-----MKLFEYIQADERFGKVFNRA Arabidopsis_thaliana_AT4G35160.1 PLSRRLMITRR----DGKSLAPFVLFETTPEMLAPWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEA Arabidopsis_thaliana_AT3G62000.1 -------------------------------------------------------------SQMQVSPDQAQLLAMLVQM Arabidopsis_thaliana_AT3G61990.1 --------------------------------------------------------------QIQVSPDQAQLLAMLVEI Arabidopsis_thaliana_AT1G24735.1 ------------------------------------------------------------LSEMEVPVDEGHFLSMLLKI Arabidopsis_thaliana_AT1G67980.1 ------------------------------------------------------------LSEMEVPVDEGHFLSMLVKI Arabidopsis_thaliana_AT1G67990.1 ------------------------------------------------------------LSEMGVPVDESLFLSMLVKI Arabidopsis_thaliana_AT4G26220.1 ------------------------------------------------------------QAGMATAPDAGQLMGMLLNL Arabidopsis_thaliana_CCoAOMT1 ------------------------------------------------------------WNIMTTSADEGQFLNMLIKL Zea_mays PVCKWLTPN-----EDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYG-----MTAFEYHGTDSRFNRVFNEG Amborella_trichopoda PVTKFLVKN-----QDGVSMAPLVLMNQDKVLMESWYHLKDAVLEGGVPFNRAYG-----MTAFEYHGKDPRFNKVFNRG Selaginella_moellendorffii SMCKHLIKD-----ERGVSLAHHVLMNQDKVFMETWQYLHEAVLDGG-EPFTKAFG----QTEFELGKENSRVNNLFHAA Medicago_sativa TVAKYLVKN-----EDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYG-----MTAFEYHGTDPRFNKVFNKG Glycine_max PVAKYLVRN-----EDGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYG-----MTAFEYHGTDPRFNKVFNKG Liquidambar_styraciflua PVCKFLTRN-----DDGVSIAALSLMNQDKVLMESWYHLTEAVLEGGIPFNKAYG-----MTAFEYHGTDPRFNTVFNNG Populus_trichocarpa_Potri.012G00 PVCKFLTKN-----EDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYG-----MTAFEYHGTDPRFNKVFNKG Populus_trichocarpa_Potri.015G00 SVCKFLTKN-----EDGVSVSPLCLMNQDKVLMESWYHLKDAILEGGIPFNKAYG-----MTAFEYHGTDPRFNKVFNKG Oryza_sativa PVCKWLTPN-----EDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYG-----MTAFEYHGTDARFNRVFNEG Brachypodium_distachyon_Bradi3g1 PVCKWLTPN-----EDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYG-----MSAFEYHGTDPRFNRVFNEG Brachypodium_distachyon_Bradi1g1 PVCKWLTPN-----DDGVSMDPLALLIQDKVSMESWYHLKDVVLDGGLPFNKAHG-----IIAFEYHGKDARFDRVFNEA Sphagnum_fallax_Sphfalx0189s0021 PVGTYFVSGK----EDGDSLAPLLFLEQDRDVQEAWRHLSATVLDDTTEPFRRAHG----MSCFQYVGHNPRFYEVFNSS Sphagnum_fallax_Sphfalx0052s0034 PVGTYFVRSD----EDGASLAPLLFLEQDRDFQEGWHHLSATVLDDSTDTFTRAHG----ESYFQYTSHNPRFSDLLNAG Physcomitrella_patens PIGKFLVDDA----EKG-SLVHLLLMYQDPVFLSTWNHLPESVLDDSVQPFARAHGG---LHAWEYGMQNPEFDEKFNKA Ginkgo_biloba PLCKYLVQN-----KDGVSLAPLVLMNQDKVFMESWYYLKDAVLDGSQPFTKAHG-----VNAFEYPAKDPRFNNVFNRA Pinus_pinaster_PpOMT1 PLCKYLVKN-----QDGVSLAPLVLMNQDKVLMESWYYLKDALLDGSQPFTKAHG-----MNAFEYPAMDQRFNRVFNRG Pinus_pinaster_PpOMT2 PLCKYLVKN-----QDGISLAPLVLMNQDKVLMESWYYLKDAVLEDSHPFTKAHG-----MKAFEYLAIDRRFNRLFNRA Pinus_pinaster_PpOMT3 PLCKYLIKN-----NDGVSLAPKVLMNQDMVFMKTWHYLKDAVLEGSQPYTKAQG-----MNAFEHMATDQRINSVVNKA Pinus_pinaster_PpOMT4 PLCKYLVNN-----QDGVSLAPLVLMNQDKVFMESWFYLKDAVLEGAQPFTKAHG-----MSAFEYPAIDQRFNRVFNRA Pinus_pinaster_PpOMT5 PLCKYLVKN-----QDGVSLAPFLLMNQDKVLMESWYYLKNAVLDGSQPFPKAYG-----MNAFEYAATDQRFN----RA Pinus_pinaster_PpOMT6 PLCKYLVKN-----EDGDSLAPLVLMNVDKVPMESWYYLKDAVLEGSQPFIEAHG-----MNAFEYLAIDPRFNMLFNRA Pinus_pinaster_PpOMT7 SLCKYLVKN-----QDGISLAPMLLLFQDKVMMESLYYLKDAVLEDSHPFTKAHG-----MKALEYLAIDRRFNRLFNRA Pinus_pinaster_PpOMT8 DVGKTLVKD-----ETGLSYGSYVLQHHQKALMGAWPLLHSAVLDPSEEPFRKANG----KPAYEFYGDDKDSNELMRTA Pinus_pinaster_PpOMT9 PLCKYLVNN-----QDGVSLAPLALMNQAKLFMESWLYLKDAVLEGSQPFTKAHG-----MNAFDYAAIDQRFNTLFNRA Pinus_pinaster_PpOMT10 PTSKWLVKE------RELSMVPMVLMQSDERTMAPWHRFNECVLDGG-----VAFERANGADIWAYASAHPDFNHLFNNA Pinus_pinaster_PpOMT11 PASKWLVQES-----RELSMAPMLLMQNDERSVAPWHRFNECVLDGG-----VAFERANGAEVWDYASAHPEFNDLFNSA Pinus_pinaster_PpOMT12 GISKLLVQGGN-----QQSCGPFLLLIANNIYLEAFQHLHESVLEGCY-----TFNKAYGTSPWEYLGRDPQANQIFNNA Pinus_pinaster_PpOMT13 NLTKTYFVS---EEISPLSLAPLALMPTDALLMQPWDHIHERVLHVG---DNFKNSCGNGKGFWSFVAANPGVNNVFNAA Pinus_pinaster_PpOMT14 ALSELLTVQN------EYSCVPLVFSATSKVPWEGLQRLHETVMEGCP-----AFTKAFGMNAWDYFRTYPHENEIFNRA Pinus_pinaster_PpOMT15 DTAKTFFVSQGEKNENPWSLVPYFLMLNDESLMTPLHHIHDYVLQENG-VAGGAFQITHGG---SYTKENPHTRTLLMKG Pinus_pinaster_PpOMT16 HTAKCYFLSDQNENK-PCSMVPLLLMQTHEKLMAPWHHFHECVLQGEG-CEG-AFTKAHGKDVWAYCMDDPNLNTVINNA Pinus_pinaster_PpOMT17 NLTKTYFTS---EDISSRSLVPFVLLQTHPLYVTAWDHIHERVLHGG---DNFKNSSGNGKDFWNFAAGHPELNAIFNAG Pinus_pinaster_PpOMT18 PASKWLVKG------RELSMAPMLLMQNDKTTLAPWHHFNECVLEGG-----VAFKKANGAEIWSYASDHPDFNNLFNNA Pinus_pinaster_PpOMT19 GISKLLAQRET-----QQSCGHFLLLIANNVYLDAFQHLHDSVLEGCY-----TFNKAYGMSPWEYLGRDPQANQIFNNA Pinus_pinaster_PpOMT20 GISKLLVHGGN-----EQSCGPFLLLIANNIFLEAFQHLHESVLEGCC-----AFNKAHGMDPWEYLGNNPEFNKIFNKA Pinus_pinaster_PpOMT21 GISKLLVRGGN-----EQSCGPFLLLIANNVYLEAFQHLHESVLEGCY-----TFNKAYDMSPWEYLGHDPKANKIFNNA Pinus_pinaster_PpOMT22 GISKLLVHGGN-----QESCGPFLLLIANNVYLEAFQHLHESVLEGCY-----TFNKAHGMDHWEYLGNNPDFNQIFNKA Pinus_pinaster_PpOMT23 GISKLLVHGGN-----QESCGPFLLLIANNVYLEAFQHLHESVLEGCY-----TFNKAHGMDHWEYLGNNPDFNQIFNKA Pinus_pinaster_PpOMT24 NLAKTYFIS---QDMSSRSLVPFVLLQTHPVYVTAWDHIHERVLHGG---DNFKDSSGNGQEFWNFTASNPEFNAIFNAG Arabidopsis_thaliana_COMT1 MSNHST-ITMKKILETYKGFEGLT--SLVDVGGGIGATLKMIVS-KYPNLKG-INFDLPHVIEDAPSHPGIEHVGGDMFV Arabidopsis_thaliana_AT1G33030.1 MKGFNE-VFIEEFLKNYNGFDGVK--SLVDVGGGDGSLLSRIISKHTHIIKA-INFDLPTVINTSLPSPGIEHVAGDMFT Arabidopsis_thaliana_AT3G53140.1 MSGVSV-PFMKAILDGYDGFKSVD--ILVDVGGSAGDCLRMILQ-QFPNVREGINFDLPEVVAKAPNIPGVTHVGGDMFQ Arabidopsis_thaliana_AT1G21100.1 G--FTI-AVVKKALEVYEGFKGVK--VLVDVGGGVGNTLGVVTS-KYPNIKG-INFDLTCALAQAPSYPGVEHVAGDMFV Arabidopsis_thaliana_AT1G21110.1 G--FTI-AVVKKALEVYQGFKGVN--VLVDVGGGVGNTLGVVTS-KYPNIKG-INFDLTCALAQAPTYPGVEHVAGDMFV Arabidopsis_thaliana_AT1G21120.1 G--FTI-AVVKKALEVYQGFKGVN--VLVDVGGGVGNTLGVVTS-KYPNIKG-INFDLTCALAQAPSYPGVEHVAGDMFV Arabidopsis_thaliana_AT1G21130.1 G--FTI-AVVKKALEVYQGFKGVN--VLVDVGGGVGNTLGVVAS-KYPNIKG-INFDLTCALAQAPSYPGVEHVAGDMFV Arabidopsis_thaliana_AT1G76790.1 G--FSV-AVLKKILQVYSGFEGVN--VLVDVGGGVGDTLGFVTS-KYPNIKG-INFDLTCALTQAPSYPNVEHVAGDMFV Arabidopsis_thaliana_AT5G37170.1 MSDSST-MIMTKILEVYKGLKDVN--TLVDIGGGLGTILNLVISSKYPQIKG-INFDLAAVLATAPSYPGVEHVPGDMFI Arabidopsis_thaliana_AT1G77520.1 MSEPST-MIMKKVLDVYRGFEDVN--TLVDVGGGNGTVLGLVTS-KYPHIKG-VNFDLAQVLTQAPFYPGVEHVSGDMFV Arabidopsis_thaliana_AT1G77530.1 MSESST-MVMKKVLEEYRGFEDVN--TLVDVGGGIGTILGLITS-KYPHIKG-VNFDLAQVLTQAPFYPGVKHVSGDMFI Arabidopsis_thaliana_AT1G51990.1 MTNHTS-IVMKKILENYIGFEGVS--DFVDVGGSLGSNLAQILS-KYPHIKG-INFDLPHIVKEAPQIHGVEHIGGDMFD Arabidopsis_thaliana_AT5G53810 MLESST-MVTEKVLKFYEGFKDVK--TLVDVGGGLGNTLGLITS-KYPHLIG-INFDLAPVLANAHSYPGVNHVAGDMFI Arabidopsis_thaliana_AT4G35160.1 MACDARRVVPRVAGACHGLFDGVT--TMVDVGGGTGETMGMLVK-EFPWIKG-FNFDLPHVIEVAEVLDGVENVEGDMFD Arabidopsis_thaliana_AT3G62000.1 LAAERC-----IEVGVYTGYSSLA---VALVLPESGCLVACERD-----------SNSLEVAKRYYELAGVSHKVNVKQG Arabidopsis_thaliana_AT3G61990.1 LGAKRC-----IEVGVYTGYSSLA---VALVLPESGRLVACDKD-----------ANALEVAKRYYELAGVSHKVTVKHG Arabidopsis_thaliana_AT1G24735.1 MNAKKT-----IELGVFTGYSLLT---TALALPHDGHVTGIDID-----------KEAYEMGLEFIKNAGVHHKINFIHS Arabidopsis_thaliana_AT1G67980.1 MNAKNT-----IEIGVFTGYSLLT---TALALPEDGRITAIDID-----------KEAYEVGLEFIKKAGVDHKINFIHS Arabidopsis_thaliana_AT1G67990.1 INAKNT-----IEIGVFTGYSLFT---VALALPEDGRITAIDID-----------QAGYNLGLEFMKKAGVDHKINFIQS Arabidopsis_thaliana_AT4G26220.1 VNARKT-----IEVGVFTGYSLLL---TALTLPEDGKVIAIDMN-----------RDSYEIGLPVIKKAGVEHKIDFKES Arabidopsis_thaliana_CCoAOMT1 VNAKNT-----MEIGVYTGYSLLA---TALALPEDGKILAMDVN-----------RENYELGLPIIEKAGVAHKIDFREG Zea_mays MKNHSV-IITKKLLDFYTGFEGVS--TLVDVGGGVGATLHAITS-RHPHISG-VNFDLPHVISEAPPFPGVRHVGGDMFA Amborella_trichopoda MSDHST-ITMKKILDDYPGFEGLN--CIVDVGGGIGATLNMIVG-KYGHIKG-INFDLPHVIADAPEFPGVTHVGGDMFE Selaginella_moellendorffii MSNHSK-LYMNAILEAYHGFKGIG--TLVDVGGGVGTSLTVILK-KYPEIKG-INFDLPHVVAKAPQIPGVEHVGGDMFV Medicago_sativa MSDHST-ITMKKILETYTGFEGLK--SLVDVGGGTGAVINTIVS-KYPTIKG-INFDLPHVIEDAPSYPGVEHVGGDMFV Glycine_max MADHST-ITMKKILETYTGFEGLK--SLVDVGGGTGAVVNMIVS-KYPTIKG-INFDLPHVIEDAPSYPGVEHVGGDMFV Liquidambar_styraciflua MSNHST-ITMKKILETYKGFEGLG--SVVDVGGGTGAHLNMIIA-KYPMIKG-INFDLPHVIEEAPSYPGVEHVGGDMFV Populus_trichocarpa_Potri.012G00 MSDHST-ITMKKLLETYKGFEGLT--SLVDVGGGTGAVVNTIVS-KYPSIKG-INFDLPHVIEDAPSYPGVEHVGGDMFV Populus_trichocarpa_Potri.015G00 MSDHSK-IAMKKILETYKGFEGLA--SLVDVGGGTGAVLSTIVS-KYPSIKG-INFDLPHVIADAPAFPGVENVGGDMFV Oryza_sativa MKNHSV-IITKKLLDLYTGFDAAS--TVVDVGGGVGATVAAVVS-RHPHIRG-INYDLPHVISEAPPFPGVEHVGGDMFA Brachypodium_distachyon_Bradi3g1 MKNHSI-IITKKLLDLYPGFEGLG--TLVDVGGGVGATVGAIVA-RHPAIKG-INFDLPHVISEGIPFPGVTHVGGDMFQ Brachypodium_distachyon_Bradi1g1 MKNHST-ILTKKFLEFYTGFDDVK--TLVDVGGGVGATIRAIIS-KYPHISG-VNFDLPHVISSAPTCPGVQHIGGDMFK Sphagnum_fallax_Sphfalx0189s0021 MAHHSR-LYMKAVLRAYHGFQDVK--CLVDVGGGTGSTLALITA-KYPHIRG-INFDLPNVALASPAYPGVEHVGGNMFD Sphagnum_fallax_Sphfalx0052s0034 MGNQSR-LYMQAVLRTYHGFQDVK--CLVDVGGGTGSSLALITA-KYPHIRG-INYDLPHVAAASPAYLGVEHIGGNMFE Physcomitrella_patens MAGHSK-LYMRAFLDVYQGFEGVR--VLIDVGGGFGSAISTITA-RYPHIKG-INFDQPHVIKACPELPGVEHMSGDMFE Ginkgo_biloba MAEHST-MLMQKILDTYPGFKDVQ--EIVDVGGGIGSTLNLIVS-KYPHIKG-VNFDMPHVVAEAPQSPGLRHVGGDMFD Pinus_pinaster_PpOMT1 MSEHST-LLMNKILDTYEGFKEVQ--ELVDVGGGVGSTLNLIVS-KYPHISG-INFDMPHVVADAPHYPAVKHVGGDMFD Pinus_pinaster_PpOMT2 MSETST-MLMNKILDTYEGFKEVQ--ELVDVGGGVASTLNLIVS-RYPHISG-INFDMPHVVAEAPHNPGVKHVGGDMFD Pinus_pinaster_PpOMT3 MSAHST-MLMNKILDTYEGFKEVQ--ELVDVGGGIGSTLNLIIT-RYPHITG-INFDMPHVLADAPNYPAVRHVAGNMFD Pinus_pinaster_PpOMT4 MSENST-MLMNKILDTYEGFKEVQ--ELVDVGGGIGSTLNLIVS-RYPHISG-INFDMPHVLADAPHYPAVKHVGGDMFA Pinus_pinaster_PpOMT5 MSEHST-MLVNKILDTYEGFKEVQ--ELVDVVGGVGSTLNLIVS-KYPHISG-INFDMPHVVADAPHYPAVKHVGGDMFD Pinus_pinaster_PpOMT6 MSEPST-MLMSKILDTYEGFKEVQ--ELVDVGGGVGSTLNLIIS-RYPHISG-INFDMPHVVADAPHYPAVKHVGGDMFD Pinus_pinaster_PpOMT7 MSETSS-MLMNKILDRYEGFKEVQ--ELVDVGGGVGSTLNLIVS-RYPHISA-INFDMAHVVADAPHYPAVKHVSGDMFD Pinus_pinaster_PpOMT8 MASLSM-PFMKTVLKYYQGFKGVR--TLVDVGGSSGFCLHMIIQ-KHENIRG-INFDLPHVVAGAPAYDGIEHVGGDMFE Pinus_pinaster_PpOMT9 MSEHST-MLMNKILDTYEGFKEVQ--ELVDVGGGVGATLNLIVS-RYPHMSG-INFDMPHVVAEAPHYPAVKHVGGDMFD Pinus_pinaster_PpOMT10 MACNAR-IVMKALLSKYRGFDGLT--SLVDIGGGTGTAIAEIVR-AYPSIRG-INYDLPHVVATAPHLPGVEHMGGDMFE Pinus_pinaster_PpOMT11 MACNAR-IVMKALLSKYQGFHGLN--SLVDVGGGTGTAVAEIVR-SYPSIKC-INYDLPHVVATAPHHPGVEHQGGDMFK Pinus_pinaster_PpOMT12 MVANSSTVMASVAKMYEDGFKSMA--TLVDVGGGMGSSLSIIVK-EHSHIRG-INLDLPHVIATALPITGVEHMDGNMFE Pinus_pinaster_PpOMT13 MLSLTK-VDMREILTYDG-FKDVN--TLVDLGGGHGEVISQIIA-VYPHIHA-INFDLPHVIATAPTLPGITHISGDMFE Pinus_pinaster_PpOMT14 LATDTRAVMDSVVKVYDDVFKNIN--TVVDVAGGTGSAISMIVE-AHPHIRG-INLDLPHVIDTAPALPGVEHLRGNMFE Pinus_pinaster_PpOMT15 FESFTN-VIMRLFLGCYKGLKPGEKLRVVDVGGGRGTAIARIVE-VHPHIRG-INFDLPHVIETAPLISGVEHVRGDMFE Pinus_pinaster_PpOMT16 MASFTN-IVMIPFLSVYEGFKSGEKLRVVDVGGGKGAAIAQIVK-AYPHING-INFDLPHVIATAPPISDVQHVGGDMFH Pinus_pinaster_PpOMT17 MVSVTK-ATITDVLAVYDGFKDIN--TLVDVGGGRGEALNLIIE-AHPHIRA-INFDLPQVIATAPTIPGVQHMSGNLFE Pinus_pinaster_PpOMT18 MACNAR-IVMKAILSKYQGFHSLN--SLVDVGGGTGTAVAEIVR-AYPFITG-INYDLPHVVATASSLSGVQHVGGDMFE Pinus_pinaster_PpOMT19 MAANSSTVMASVAKMYEDGFKSMA--TLVDVGGGIGTSLSIIVK-EHSHIRG-INLDLPHVVATALPITGVEHMGRNMFE Pinus_pinaster_PpOMT20 MATNTRSVMPSVAKMYEDGFKSMA--TLVDVGGGMGSALSIIVK-EHSHIRG-INLDLPHVIATAPPITGVEHMEGNMFE Pinus_pinaster_PpOMT21 MAANSSTVMASVAKMYEDGFKSMS--TLVDVGGGMGSALSIIVK-EHSHIRG-INLDLPHVIATASPITGVEHMGGNMFE Pinus_pinaster_PpOMT22 MATNTRSLMASVAKMYEDGFKSMA--TLVDVGGGLGSALSIIVK-EHPHIRG-INLDLPHVIATAPLITGVEHMEGNMFE Pinus_pinaster_PpOMT23 MATNTRSLMASVAKMYEDGFKSMA--TLVDVGGGLGSALSIIVK-EHPHIRG-INLDLPHVIATAPLITGVEHMEGNMFE Pinus_pinaster_PpOMT24 MVSVTK-ATMAEILAIYDGFKDVN--TLVDLGGGHGEALSLIID-AYPHIRA-INFDLPQVIATAPTLTGVQHISGSLFE Arabidopsis_thaliana_COMT1 SVP-KGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDG-KVILAECILPETPDS---SLSTK--------QVVHVDCIML Arabidopsis_thaliana_AT1G33030.1 NTP-KGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNG-KVIVVDMVIPEFPGD---TLLDR--------SLFQFELFMM Arabidopsis_thaliana_AT3G53140.1 SVPSA-DAIFMKWVLTTWTDEECKQIMKNCYNALPVGG-KLIACEPVLPKETDE---SHRTR--------ALLEGDIFVM Arabidopsis_thaliana_AT1G21100.1 DVP-TGDAMILKRILHDWTDEDCVKILKNCWKSLPENG-KVVVIELVTPDEAENG--DINAN--------IAFDMDMLMF Arabidopsis_thaliana_AT1G21110.1 DVP-TGNAMILKRILHDWTDEDCVKILKNCWKSLPQNG-KVVVIELVTPDEAENG--DINAN--------IAFDMDMLMF Arabidopsis_thaliana_AT1G21120.1 DVP-TGDAMILKRILHDWTDEDCVKILKNCWKSLPENG-KVVVIELVTPDEAENG--DINAN--------IAFDMDMLMF Arabidopsis_thaliana_AT1G21130.1 DVP-TGDAMILKRILHDWTDEDCVKILKNCWKSLPESG-KVVVIELVTPDEAENG--DINAN--------IAFDMDMLMF Arabidopsis_thaliana_AT1G76790.1 DVP-KGDAILLKRILHDWTDEDCEKILKNCWKALPENG-KVIVMEVVTPDEADNR--DVISN--------IAFDMDLLML Arabidopsis_thaliana_AT5G37170.1 DVP-KGDAIFMRRILRDWNDKDCVKILTNCWKSLPEKG-KVIIVDMVAPSEPKSD--DIFSK--------VVFGTDMLML Arabidopsis_thaliana_AT1G77520.1 EVP-KGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKG-KIIIVEFVTPKEPKGG--DLSSN--------TVFAMDLLML Arabidopsis_thaliana_AT1G77530.1 EVP-KGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKG-KVIIVEMITPMEPKPN--DFSCN--------TVLGMDLLML Arabidopsis_thaliana_AT1G51990.1 EIP-RGEVILMKWILHDWNDEKCVEILKNCKKALPETG-RIIVIEMIVPREVSET--DLATK--------NSLSADLTMM Arabidopsis_thaliana_AT5G53810 KIP-KGDAIFMKWILHDWTDEQCVAILKNCWKSLEENG-KLIIVEMVTPVEAKSG--DICSN--------IVFGMDMTML Arabidopsis_thaliana_AT4G35160.1 SIP-ACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPNIGKVLIVESVIGENKKTMIVD-----ERDEKLEHVRLMLDMVM Arabidopsis_thaliana_AT3G62000.1 LAAESLKSMIQN-GEGASYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVL-----------------WHG------ Arabidopsis_thaliana_AT3G61990.1 LAAESLMSMIQN-GEESSYDFAFLDADKAMYQEYFESLLRLVRVGGVIVIDNVL-----------------WHG------ Arabidopsis_thaliana_AT1G24735.1 DCLQALDNMLSE-NPKPEFDFAFVDADKPNYANMHERLMKLVKVGGVIAFDNTL-----------------WSG-FVAEK Arabidopsis_thaliana_AT1G67980.1 DGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTL-----------------WFG-FVAED Arabidopsis_thaliana_AT1G67990.1 DAVRGLDQLLN--GEKQEYDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDNTL-----------------WFG-TLIQK Arabidopsis_thaliana_AT4G26220.1 EALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTL-----------------WGG-SVAEP Arabidopsis_thaliana_CCoAOMT1 PALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTL-----------------WNGSVVAPP Zea_mays SVP-AGDAILMKWILHDWSDAHCATLLKNCYDALPENG-KVIVVECVLPVNTEA---TPKAQ--------GVFHVDMIML Amborella_trichopoda SVP-TGDAIFMKWILHDWGDEYCHKLLKNCYKALPDSG-KVIIAESILPIAAEN---SLAAH--------GVFHVDCIML Selaginella_moellendorffii SVPQG-DAIFMKWILHDWSDEACITLLKNCYKSIPEHG-KVIVVDSVLPSVLDT---GAGAR--------VALS-IDLLM Medicago_sativa SIP-KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNG-KVIVAECILPVAPDS---SLATK--------GVVHIDVIML Glycine_max SVP-KADAIFMKWICHDWSDEHCLKFLKNCYEALPDNG-KVIVAECILPVAPDS---SLATK--------GVVHIDVIML Liquidambar_styraciflua SVP-KGDAIFMKWICHDWSDEHCLKFLKKCYEALPTNG-KVILAECILPVAPDA---SLPTK--------AVVHIDVIML Populus_trichocarpa_Potri.012G00 SVP-KADAVFMKWICHDWSDAHCLKFLKNCYDALPENG-KVILVECILPVAPDT---SLATK--------GVVHIDVIML Populus_trichocarpa_Potri.015G00 SVP-KADAVFMKWICHDWSDEHCLRFLKNCYDALPENG-KVILVECILPVAPDT---SLATK--------GVMHVDAIML Oryza_sativa SVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHG-KVVVVECVLPESSDA---TAREQ--------GVFHVDMIML Brachypodium_distachyon_Bradi3g1 KVP-SGDAILMKWILHDWSDAHCATLLKNCYDALPAHG-KVVIVECILPVNPEA---TPKAQ--------GVFHVDMIML Brachypodium_distachyon_Bradi1g1 KVP-SGDAILMKWILHDWTDDHCMMLLRNCYDALPVGG-KLIIIESILPVNPEA---TPRAR--------MAFEDDMIML Sphagnum_fallax_Sphfalx0189s0021 SVPSG-DAVFMKWVLDNWNDSECVTILRNCFNALPASGGKVIAAESVLPDLVQS-KVGAGTQ--------AALRIDVSAM Sphagnum_fallax_Sphfalx0052s0034 SVPSG-DAIFMKWILHGWNDSECVTILRNCFNALPASGGKVILVESVLPDFVLHSELDAGTR--------AALRIDMIVM Physcomitrella_patens SIPSGGDAIFLKYILHDWDDESCIKLLKNCHKVLPANG-KVIAVDSVLTDTINF---EGGDR--------MAFMVDMNMM Ginkgo_biloba SVP-SGQAIFMKWILHDWSDEHCLRLLKNCHKALPEGG-KVIVVDSILPVAAET---SPYAR--------QAFHCDLLML Pinus_pinaster_PpOMT1 SVP-SGQAILMKWILHDWSDDHCLRLLKNCHKALPEKG-KVIVVDTILPVAAET---SPYAR--------QGFHIDLLML Pinus_pinaster_PpOMT2 SVP-SGQAIFMKSTLHDWSDDHCRKLLTNCHKALPEKG-KVIVVDTILPVAAET---SPHAR--------HAFNLDLIML Pinus_pinaster_PpOMT3 SVP-SGQTIFMKWILHDWSDDDSVKVLKNCHKALPEKG-MVIVVDVILPVAAET---SPYAR--------QASHLDLMML Pinus_pinaster_PpOMT4 SVP-SGQAIFMKWILHDWSDDHCRKLLKNCHKALPEKG-KVIAVDTILPVAAET---SPYAR--------QGFHTDLLML Pinus_pinaster_PpOMT5 SVP-SGQPIFMKWILHDWSDDHCLRLLKNCHKALPEKG-KVIVVDTILPVAAET---SPYAR--------QGFHIDLLML Pinus_pinaster_PpOMT6 SVP-SGQAIFMKSTLHDWSDDHCRKLLTNCHKALPEKG-KVIVVDTILPVAPET---SSHAR--------HAFHLDLIML Pinus_pinaster_PpOMT7 SVP-SGQAVFMKSILHDWSDDHCRKLLKNCHKALPEKG-KVIVVDTILPVAAET---SPHAR--------HAFDLDLIML Pinus_pinaster_PpOMT8 FIPSG-DAIFMKWILSTWSDEKCIQILRNCYKALPDGG-KVIACEPVLPKYTDD---SQRTR--------TLLEGDIFIM Pinus_pinaster_PpOMT9 SVP-SGQAIFIKTILHDWSDDHCRKILTNCHKALPEKG-KVILVDSILPLVADT---SRHAR--------HAFDLDLTML Pinus_pinaster_PpOMT10 TVP-SADAIFMKWIMHDWGDEDCIKILKSCRKAIP-ETGKLIIVDVVALDSNHTSNNNNGSQKKKLVLDPNLVLVFDLVM Pinus_pinaster_PpOMT11 TVP-PAEAILMKWIMHDWSDEECIKILKKCREAIP-ETGKVIIVDVVLDEVQDQNG------KKNSVMDPDLGIVFDLVM Pinus_pinaster_PpOMT12 HIP-SADAVLMKWIIHDWGDEECVKLLRRSYEATP-AKGKVLIVEAIVGGDKEGESMSRR-----------LGLLYDISM Pinus_pinaster_PpOMT13 CVP-SGDAILMKHVLHLWDDEDCIKLLKMCYKATS-DKGKLIIVDAVLDITEDSDPIG-------------SGQLMDIVM Pinus_pinaster_PpOMT14 HIP-PADAVFLKSVLHDWKDEQCVEILKKCDEATS-GNGKVIVVEAIVEEEVG---CVKQ-----------MVLRSDIEM Pinus_pinaster_PpOMT15 SIP-SADVVFIKHVLHHWDDDQCAKILENCHKALT-DNGKVIVVEAVMCEKP-SPSQE-------------VRMICDLMA Pinus_pinaster_PpOMT16 SVP-SGDVIFMKQILHDWDDERCAKILENCHRALP-ENGRIVVVEIVVSQHDQNRSQH-------------VEMVASLTM Pinus_pinaster_PpOMT17 SAP-SADAIFMKNFLHSWNDEDCIKLLNNCHQALP-DKGKLILSEAILDLTEGSDMIG-------------SANVLDAVM Pinus_pinaster_PpOMT18 TVP-TGDAIFMKWIMHDWNDEDCIKILKNCKKAIP-DTGKVIIVDVVLDADQGDNTD----KKRKKAVDPIVSTVFDLVM Pinus_pinaster_PpOMT19 HIP-TADAVMMKSILHDWGDEECVKLLRRSYEATP-AKGKVLIVEAIVGGDKEGESMSRR-----------LGLLYDISM Pinus_pinaster_PpOMT20 HIP-SADAILMKWIIHDWGDEECVKLLRRSYEATP-EKGKVLIVEAIVGGDKEGESMSRR-----------LGLLYDISM Pinus_pinaster_PpOMT21 HIP-SADAVMMKWIIHDWGDEECVKLPRRSYEATP-AKGKVIIVEAIVGGDKEGESMSRR-----------LGLLYDISR Pinus_pinaster_PpOMT22 HIP-SADAVMMKWILHDWADEECVKLLRRSYDATP-SKGKVLIVEAIIAKDKEGESMSRR-----------LGLLYDISM Pinus_pinaster_PpOMT23 HIP-SADAVMMKWILHDWADEECVKLLRRSYDATP-SKGKVLIVEAIIAKDKEGESMSRR-----------LGLLYDISM Pinus_pinaster_PpOMT24 TAP-SADAIFIKNFLHIWDDQDCIKLLKNCYQAVP-DKGKLIIAEAVLDLTEDSDMMG-------------SANVLDALM Arabidopsis_thaliana_COMT1 AHN-PGGKERTEKEFEALAKASGFKG-IKVVCDAFGVNLIELLKKL--- Arabidopsis_thaliana_AT1G33030.1 NMN-PSGKERTKKEFEILARLAGFSN-VQVPFTSLCFSVLEFHKNK--- Arabidopsis_thaliana_AT3G53140.1 TIYRTKGKHRTEEEFIELGLSAGFPT-FRPFYIDYFYTILEFQK----- Arabidopsis_thaliana_AT1G21100.1 TQC-SGGKERSRAEFEALAAASGFTH-CKFVCQAYHCWIIEFCK----- Arabidopsis_thaliana_AT1G21110.1 TQC-SGGKERSRAEFEALAAASGFSH-CQFVCQAYHCWIIEFCK----- Arabidopsis_thaliana_AT1G21120.1 TQC-SGGKERSRAEFEALAAASCFTH-CKFVCQAYHCWIIEFCK----- Arabidopsis_thaliana_AT1G21130.1 TQC-SGGKERSRAEFEALAAASGFTH-CKFVCQAYHCWIIEFCK----- Arabidopsis_thaliana_AT1G76790.1 TQL-SGGKERSRAEYVAMAANSGFPR-CNFVCSAYHLWVIELTKQA--- Arabidopsis_thaliana_AT5G37170.1 TQC-SCGKVRSFAQFEALASASGFHK-CEVSGLAYTYSVIEFHK----- Arabidopsis_thaliana_AT1G77520.1 TQC-SGGKERSLSQFENLAFASGFLR-CEIICLAYSYSVIEFHK----- Arabidopsis_thaliana_AT1G77530.1 TQC-SGGKERSLSQFENLAFASGFLL-CEIICLSYSYSVIEFHK----- Arabidopsis_thaliana_AT1G51990.1 SLT-SGGKERTKKEFEDLAKEAGFKL-PKIIYGAYSYWIIELYPN---- Arabidopsis_thaliana_AT5G53810 TQC-SGGKERDLYEFENLAYASGFSR-CAIVCAVYPFSVIEIYK----- Arabidopsis_thaliana_AT4G35160.1 MAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDV--QSLIIAYRS--- Arabidopsis_thaliana_AT3G62000.1 RVSDPMVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR---- Arabidopsis_thaliana_AT3G61990.1 WVADSTVNDERTISLRNFNKKLMDDQRVSISMVSIGDGMTICRKR---- Arabidopsis_thaliana_AT1G24735.1 EENVPVHMRVNRKAFLDLNKRLAADPHVEVSQVSIGDGVTLCRRLV--- Arabidopsis_thaliana_AT1G67980.1 EDGVPEHMREYRAALIEFNKKLALDPRVEVSQISIGDGITLCRRLV--- Arabidopsis_thaliana_AT1G67990.1 ENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRRLI--- Arabidopsis_thaliana_AT4G26220.1 DSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY--- Arabidopsis_thaliana_CCoAOMT1 DAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRIS--- Zea_mays AHN-PGGKERYEREFRELAKGAGFSG-FKATYIYANAWAIEFIK----- Amborella_trichopoda AHN-PGGKERTEKEFEALAKGAGFAG-IKVVCCAYGSCIIEFYK----- Selaginella_moellendorffii LVYNPGGKERTFEDFEKLAKASGFSS-VKVPVTVDFISVVEFHK----- Medicago_sativa AHN-PGGKERTQKEFEDLAKGAGFQG-FKVHCNAFNTYIMEFLKKV--- Glycine_max AHN-PGGKERTEKEFEALAKGSGFQG-FQVLCCAFNTYVMEFLKKV--- Liquidambar_styraciflua AHN-PGGKERTEKEFEALAKGAGFEG-FRVALCAYNTWIIEFLKKI--- Populus_trichocarpa_Potri.012G00 AHN-PGGKERTEKEFEGLAKGAGFQG-FEVMCCAFNTHVIEFRKN---- Populus_trichocarpa_Potri.015G00 AHN-PGGKERTEKEFEGLARGAGFKG-FEVMCCAFNTYVIEFRKQA--- Oryza_sativa AHN-PGGKERYEREFRELARAAGFTG-FKATYIYANAWAIEFTK----- Brachypodium_distachyon_Bradi3g1 AHN-PGGKERYEREFEELARGAGFTG-VKATYIYANAWAIEFTK----- Brachypodium_distachyon_Bradi1g1 TYT-PGGKERYKREFEVLAKGARFAS-VRTTYIYANSWAIEYTK----- Sphagnum_fallax_Sphfalx0189s0021 MFNAVGAKERTLQEFRKLAKAAGFAS-VSVVATVDFLSVLEFKKV---- Sphagnum_fallax_Sphfalx0052s0034 MLNTVGAKERTLQEFRQLAMAAGFAS-VCVVVTVDFLSVLEFNKA---- Physcomitrella_patens AFNHSGARERNEGEMRKLGLYAGFLR-VDVVCKVDQLSVTEFIKA---- Ginkgo_biloba AYN-PGGKERTEQEFRDLAKATGFAGGVKPVCCINGMWVMEFHKQA--- Pinus_pinaster_PpOMT1 AYN-PGGKERTKQEFRDLAKEVGFAGGVKPVCCVNGMWVMEFHK----- Pinus_pinaster_PpOMT2 TNS-PGGKERTEQEFQELGQAAGFVGGVKPICCINGFWVMEFHK----- Pinus_pinaster_PpOMT3 AYS-PGGKERTEQEFQELGHAAGFEGGVKPICCVNGLWVMEFHK----- Pinus_pinaster_PpOMT4 AYN-QGGKERTEQEFQDLAKETGFAGGVEPVCCVNGMWVMEFHK----- Pinus_pinaster_PpOMT5 AYN-PGGKERTEQEFRDLAKEVGFAGGVKPVCCVNGMWVMEFHK----- Pinus_pinaster_PpOMT6 TNC-PGGKERTEQEFQELGHAAGFVGGVKPICCINGFWVMEFHK----- Pinus_pinaster_PpOMT7 TNS-SGGKERTEQEFQVLGQAAGFVGGVKPICCVNGHWVMEFHK----- Pinus_pinaster_PpOMT8 TIYSSGGKERTEEEFRKLCSDAGFSK-LETRDLDPFYSLLEIQK----- Pinus_pinaster_PpOMT9 TIT-PGGKERTAQEFQELADATGFVGGIKPMCCVNGFWVMEFHK----- Pinus_pinaster_PpOMT10 VAHCSGGKERTEEEWKKILSEGGFHCYKIITIPDF--QSVIEAFPS--- Pinus_pinaster_PpOMT11 VAHSSGGKERSEEEWKKILLEGGFSRYNIITIPAL--QSVIEAFPR--- Pinus_pinaster_PpOMT12 MVYTTGGKERTEEEFKGLFERAGFERYTIIKLPFLQSLIVLSKA----- Pinus_pinaster_PpOMT13 LTVFPGARERTREQWNEILQSAGFSLSKIVGRKGS-VAKIIEALKC--- Pinus_pinaster_PpOMT14 MAFTDGGKERTEDEFKEIFRLAGYRRYVITKLPSSPFSIIEIFKA---- Pinus_pinaster_PpOMT15 EMGG--GKDRNEQQWRRLFEKSGFSPLKIAELPVISSLSILEATKAKFL Pinus_pinaster_PpOMT16 LAHTN-GRERNEQQWRRLFESSGFSTLKMVGLLGNTHFSVLEATKAKIH Pinus_pinaster_PpOMT17 LNCLPGGGERTRKQWNDLLQAAGFSISKIVGRNGT-LTKVIEAIKS--- Pinus_pinaster_PpOMT18 VAHSSGGKERTEKEWKRILLEGGFSRYNIIEIPAL--QSVIEAFPR--- Pinus_pinaster_PpOMT19 MVYTTGGKERTEEEFKGLFQRAGFKSHTIIKLPFLQSLIVLSKS----- Pinus_pinaster_PpOMT20 MVYTTGGKERTEKEFKELLELAGFKRYTIIKLPFLQSLIVLSKA----- Pinus_pinaster_PpOMT21 RRREQRKN----------------------------------------- Pinus_pinaster_PpOMT22 IVYTTGGKERTEEEFKGLFQRAGFKSHTIIKLPFLQSLIVLSKA----- Pinus_pinaster_PpOMT23 IVYTTGGKERTEEEFKGLFQRAGFKSHTIIKLPFLQSLIVLSKA----- Pinus_pinaster_PpOMT24 LNLSPGGRERTRKQWNELLRAAGFSLSKIVGKKGN-LTKVIEAIKC--- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "OMT_Alin_D_nexus"') = unord: 1 - 449; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "OMT_Alin_D_nexus"') = universal: 1 - 449; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "OMT_Alin_D_nexus"') = 'Mk1 (est.)': 1 - 449; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE [0] 1 Arabidopsis_thaliana_COMT1, [1] 2 Arabidopsis_thaliana_AT1G33030.1, [2] 3 Arabidopsis_thaliana_AT3G53140.1, [3] 4 Arabidopsis_thaliana_AT1G21100.1, [4] 5 Arabidopsis_thaliana_AT1G21110.1, [5] 6 Arabidopsis_thaliana_AT1G21120.1, [6] 7 Arabidopsis_thaliana_AT1G21130.1, [7] 8 Arabidopsis_thaliana_AT1G76790.1, [8] 9 Arabidopsis_thaliana_AT5G37170.1, [9] 10 Arabidopsis_thaliana_AT1G77520.1, [10] 11 Arabidopsis_thaliana_AT1G77530.1, [11] 12 Arabidopsis_thaliana_AT1G51990.1, [12] 13 Arabidopsis_thaliana_AT5G53810, [13] 14 Arabidopsis_thaliana_AT4G35160.1, [14] 15 Arabidopsis_thaliana_AT3G62000.1, [15] 16 Arabidopsis_thaliana_AT3G61990.1, [16] 17 Arabidopsis_thaliana_AT1G24735.1, [17] 18 Arabidopsis_thaliana_AT1G67980.1, [18] 19 Arabidopsis_thaliana_AT1G67990.1, [19] 20 Arabidopsis_thaliana_AT4G26220.1, [20] 21 Arabidopsis_thaliana_CCoAOMT1, [21] 22 Zea_mays, [22] 23 Amborella_trichopoda, [23] 24 Selaginella_moellendorffii, [24] 25 Medicago_sativa, [25] 26 Glycine_max, [26] 27 Liquidambar_styraciflua, [27] 28 Populus_trichocarpa_Potri.012G00, [28] 29 Populus_trichocarpa_Potri.015G00, [29] 30 Oryza_sativa, [30] 31 Brachypodium_distachyon_Bradi3g1, [31] 32 Brachypodium_distachyon_Bradi1g1, [32] 33 Sphagnum_fallax_Sphfalx0189s0021, [33] 34 Sphagnum_fallax_Sphfalx0052s0034, [34] 35 Physcomitrella_patens, [35] 36 Ginkgo_biloba, [36] 37 Pinus_pinaster_PpOMT1, [37] 38 Pinus_pinaster_PpOMT2, [38] 39 Pinus_pinaster_PpOMT3, [39] 40 Pinus_pinaster_PpOMT4, [40] 41 Pinus_pinaster_PpOMT5, [41] 42 Pinus_pinaster_PpOMT6, [42] 43 Pinus_pinaster_PpOMT7, [43] 44 Pinus_pinaster_PpOMT8, [44] 45 Pinus_pinaster_PpOMT9, [45] 46 Pinus_pinaster_PpOMT10, [46] 47 Pinus_pinaster_PpOMT11, [47] 48 Pinus_pinaster_PpOMT12, [48] 49 Pinus_pinaster_PpOMT13, [49] 50 Pinus_pinaster_PpOMT14, [50] 51 Pinus_pinaster_PpOMT15, [51] 52 Pinus_pinaster_PpOMT16, [52] 53 Pinus_pinaster_PpOMT17, [53] 54 Pinus_pinaster_PpOMT18, [54] 55 Pinus_pinaster_PpOMT19, [55] 56 Pinus_pinaster_PpOMT20, [56] 57 Pinus_pinaster_PpOMT21, [57] 58 Pinus_pinaster_PpOMT22, [58] 59 Pinus_pinaster_PpOMT23, [59] 60 Pinus_pinaster_PpOMT24; TREE Imported_tree_1 = ((((((((((((25,26)0.8870,(28,29)0.6950)0.5080,(1,27)0.4160)0.9990,23)0.7210,(32,(31,(22,30)0.4340)0.9440)0.8380)0.5150,(36,(39,(((37,41)0.9590,40)0.5830,(45,(42,(38,43)0.5950)0.7560)0.7910)0.7350)0.7850)1.0000)0.7730,((((10,11)0.9840,9)0.6800,13)0.9170,(8,(4,(7,(5,6)0.9500)0.5960)1.0000)1.0000)0.9940)0.3010,12)0.1690,(((3,44)0.9990,24)0.7090,(35,(33,34)1.0000)0.6470)0.2190)0.1220,2)0.6770,((((46,47)0.6320,54)0.9980,14)0.4490,((((53,60)0.8870,49)1.0000,(51,52)0.9770)0.3080,(50,((58,59)1.0000,(56,(57,(48,55)0.5170)0.7650)0.4530)1.0000)0.9800)0.1150)0.2840)1.0000,((15,16)1.0000,((20,21)0.9180,(17,(18,19)0.7360)0.9350)0.9210)1.0000); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1453905918689; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5994166221295381457; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8407657366261841440; mqVersion 304; checksumv 0 3 1220045498 null getNumChars 449 numChars 449 getNumTaxa 60 numTaxa 60 short false bits 1048575 states 1048575 sumSquaresStatesOnly 2.06538678853764E14 sumSquares 2.06538678853764E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1680 932; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5994166221295381457 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 944.1453905830304.4744455423518200119; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8407657366261841440 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 327; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1580 860; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;