#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=21;
	TAXLABELS
		Muscodor_albus_Honduras Muscodor_cinnanomi_Thailand Muscodor_coffeanum__Brazil Muscodor_crispans_Bolivia Muscodor_darjeelingensis_India Muscodor_equiseti_Thailand Muscodor_fengyangensis_China Muscodor_gloomensis_India Muscodor_indica_India Muscodor_kashayum_India Muscodor_musae_Thailand Muscodor_oryzae_Thailand Muscodor_roseous_Autralia Muscodor_sp._LGMF1254_Brazil_KT956909 Muscodor_strobelii_India Muscodor_suthepensis_India Muscodor_sutura_Colombia Muscodor_tigerii_India Muscodor_vitigenus_Peru Muscodor_yucatanensis_Mexico Xylariaceae_sp 
	;
END;

BEGIN CHARACTERS;
	TITLE  Muscodor_sp._endophyte_from_Citrus_sinensis;
	DIMENSIONS  NCHAR=333;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Muscodor_albus_Honduras                AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_cinnanomi_Thailand            AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_coffeanum__Brazil             AACTCTGTTTTCTTTGGAATTCTGAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCATAGCCCGTAGCTCCTTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAAG--CGTAGTAACTATATCTCGCTTTTGTAGTGGTT
	Muscodor_crispans_Bolivia              AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_darjeelingensis_India         AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGA?GAAGAACGCAGCGAAACGCGATAAGTAACGTGAATTGCCGAATTCAGTGAATCCTCGAATCTTTGAACGCCCATTGCGCCCGTTAGCCTT?TAGTGGGCATGCAATGTTCGAGCGTCTATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_equiseti_Thailand             AACTCTGTTTTCTTTGGAATTCTGAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCTTGTTGCTTAGCGTTGGGAGCCTACGGCACGGCCCGTAGCTCCTTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAAG--CGTAGTAATTATATCTCGCTTCTGTAGTGGTC
	Muscodor_fengyangensis_China           AACTCTGTTTTCTCTGAAACTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGGGCCTACGGCACAGCCTGTAGCCCTTTAAAG--TGATTG-GCGGAGTTAGTTCTATCTCTAAG--CGTAGTAATTTCTTCTCGCTTCTGCAGTAGTG
	Muscodor_gloomensis_India              AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTGCGCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_indica_India                  AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAAGTGGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTC
	Muscodor_kashayum_India                AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_musae_Thailand                AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_oryzae_Thailand               AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_roseous_Autralia              AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTT-ACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_sp._LGMF1254_Brazil_KT956909  AACTCTGTTTTCTTTGGAATTCTGAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCTTGTTGCTTAGCGTTGGGAGCCTACGGCACGGCCCGTAGCTCCTTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAAG--CGTAGTAATTATATCTCGCTTCTGTAGTGGTC
	Muscodor_strobelii_India               AACTC?GTTTT-TATGGCATT?TGAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCT?TTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAACGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTCCT?AGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCTTAAAG--TGA-TG-GCGGAGTT-GTTCTCAC??TTAGGCCGGAGTAAATC-ATCT?GCCTCTCTAATGGTT
	Muscodor_suthepensis_India             AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_sutura_Colombia               AACTCTGTTTTCTTTGGAATTCTGAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCTTGTTGCTTAGCGTTGGGAGCCTACGGCACGGCCCGTAGCTCCTTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAAG--CGTAGTAATTATATCTCGCTTCTGTAGTGGTC
	Muscodor_tigerii_India                 AACTCTGTTTT-TATGGCATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAG------------CACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCACTGCCCGTAGCTCCCTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAGG--CGTAGTAAATCTATCTCGCCTCTGTAGTGGTT
	Muscodor_vitigenus_Peru                AACTCTGTTTTCTTTGGAATTCTGAATAACAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCTTGTTGCTTAGCGTTGGGAGCCTACGGCACGGCCCGTAGCTCCTTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAAG--CGTAGTAATTATATCTCGCTTCTGTAGTGGTC
	Muscodor_yucatanensis_Mexico           AACTCTGTTTTCTTTGGAATTCTGAATCATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGTTGCTTAGCGTTGGGAGCCTACGGCATAGCCCGTAGCTCCTTAAAG--TGATTG-GCGGAGTTGGTTCTCACTCTAAG--CGTAGTAACTATATCTCGCTTCTGTAGTAGTT
	Xylariaceae_sp                         AACTCTGTTTTCTATGGAATTCTGAATTATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGCATTCTAGTGGGCATGC-CTGTTCGAGCGTC-ATTTCACCACTTAAGCCCTGCTGCTTAGCGTTGGGGGCCTACGGCTTTGCCTGTAGCCCCTTAAAG--TGATTG-GCGGAGTTAGTATTATCTCTAAG--CGTAGTAATTTCTTCTCGCTTCTGTAGTAGTG
;
END;

BEGIN TREES;
	Title Muscodor_sp._endophyte_from_Citrus_sinensis;
	LINK Taxa = Taxa;
	TRANSLATE
[0] 		1 Muscodor_albus_Honduras,
[1] 		2 Muscodor_cinnanomi_Thailand,
[2] 		3 Muscodor_coffeanum__Brazil,
[3] 		4 Muscodor_crispans_Bolivia,
[4] 		5 Muscodor_darjeelingensis_India,
[5] 		6 Muscodor_equiseti_Thailand,
[6] 		7 Muscodor_fengyangensis_China,
[7] 		8 Muscodor_gloomensis_India,
[8] 		9 Muscodor_indica_India,
[9] 		10 Muscodor_kashayum_India,
[10] 		11 Muscodor_musae_Thailand,
[11] 		12 Muscodor_oryzae_Thailand,
[12] 		13 Muscodor_roseous_Autralia,
[13] 		14 Muscodor_sp._LGMF1254_Brazil_KT956909,
[14] 		15 Muscodor_strobelii_India,
[15] 		16 Muscodor_suthepensis_India,
[16] 		17 Muscodor_sutura_Colombia,
[17] 		18 Muscodor_tigerii_India,
[18] 		19 Muscodor_vitigenus_Peru,
[19] 		20 Muscodor_yucatanensis_Mexico,
[20] 		21 Xylariaceae_sp;
	TREE con_50_majrule = (21:0.00596779,(7:0.01150434,(((20:0.002929623,3:0.003153977)0.937:0.005927588,(14:0.001329874,19:0.001277672,17:0.001285117,6:0.00125504)1.000:0.01032483)0.841:0.005639219,(15:0.01409479,(1:0.001291853,8:0.001272052,13:0.001258657,4:0.001267315,2:0.00132999,18:0.001336927,10:0.001299311,5:0.01658221,16:0.00134659,11:0.00128295,12:0.001267434,9:0.007038826)0.972:0.005847172)1.000:0.009525856)1.000:0.02354886):0.00596779);
END;