#NEXUS [written Wed Feb 24 14:02:42 BRT 2016 by Mesquite version 2.75 (build 564) at SISBIOTAMAR_4/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=35; TAXLABELS 'Craterolophus_convolvulus_GERMANY' 'Craterolophus_convolvulus_UK' 'Craterolophus_convolvulus_USA' 'Depastromorpha_africana' 'Haliclystus_antarcticus_ANT' 'Haliclystus_antarcticus_CHILE' 'Haliclystus_borealis' 'Haliclystus_californiensis' 'Haliclystus_octoradiatus' 'Haliclystus_sanjuanensis' 'Haliclystus_stejnegeri' 'Haliclystus_tenuis' 'Kishinouyea_corbini' 'Lipkea_ruspoliana' 'Lucernaria_bathyphila_ARCTIC' 'Lucernaria_bathyphila_DEEPSEA' 'Lucernaria_janetae' 'Lucernaria_quadricornis' 'Lucernaria_sainthilairei' 'Lucernariopsis_campanulata' 'Lucernariopsis_cruxmelitensis' 'Lucernariopsis_tasmaniensis' 'Lucernariopsis_vanhoeffeni' 'Manania_gwilliami' 'Manania_uchidai' 'Sasakiella_cruciformis' 'Stenoscyphus_inabai' 'Depastromorpha_sp_AUS' 'Kishinouyea_sp_MOOREA' 'Kishinouyea_sp_NZ' 'Kishinouyea_sp_SAF' 'Lipkea_sp_JAPAN' 'Lucernaria_sp_EPR' 'Lucernariopsis_sp_NZ' 'Stenoscyphus_sp_AUS' ; END; BEGIN CHARACTERS; TITLE '16S_alignment_matrix_ML'; DIMENSIONS NCHAR=561; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Craterolophus_convolvulus_GERMANY' GGTGACGCCTGCCCGATGATTTGGCCTAAACT-CTTTAGTTAACTCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATCACGAGTGTTCAACTGTCTCTGAAGAAGGCCCTGTGAAATTGTAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTTCCCGCC--TCTTAAGGCTTATAGGTAACCCCCTGTAAGCCTAATTTCGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTTAAAAAAGCAACAAAGGCTAACAAAGGTATGATATAAATGTATCCGACTTGACTACTAGGGGTATTTCCCGTGTAGACACATCCGTGAGTCATAGTATTCCACCATAGGTTAACACTTATGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTTGAAGAGCTCTTATCGATGACAAAGATTGCGA------------------------------------------- 'Craterolophus_convolvulus_UK' GGTGACGCCTGCCCGATGATTTGGCCTAAACT-CTTTAGTTAACTCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATCACGAGTGTTCAACTGTCTCTGAAGAAGGCCCTGTGAAATTGTAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTTCCCGCC--TCTTAAGGCTTATAGGTAACCCCCTGTAAGCCTAATTTCGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTTAAAAAAGCAACAAAGGCTAACAAAGGTGTGATATAAATGTATCCGACTTGACTACTAGGGGTATTTCCCGTGTAGACACATCCGTGAGTCATAGTATTCCACCATAGGTTAACACTTATGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTTGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAAGGTGTAGCCGCTTTC 'Craterolophus_convolvulus_USA' GGTGACGCCTGCCCGATGATTTGGCCTAAACT-CTTTAGTTAACTCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATCACGAGTGTTCAACTGTCTCTGAAGAAGGCCCTGTGAAATTGTAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTTCCCGCC--TCTTAAGGCTTATAGGTAACCCCCTGTAAGCCTAATTTCGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTTAAAAAAGCAACAAAGGCTAACAAAGGTATGATATAAATGTATCCGACTTGACTACTAGGGGTATTTCCCGTGTAGACACATCCGTGAGTCATAGTATTCCACCATAGGTTAACACTTATGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTTGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAAGGTGTAGCCGCTTTC 'Depastromorpha_africana' GGTGACGCCTGCCCGATGATTTGTCCTAAGTTTCTCAAATGAACCCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTCCCCCTGTCTCTGAAAAAACACCCGTGAAATTGAAGAAGCCGTGCATATGCGGCTTAACTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACGCTTTTCATTCACTTACTATTTCTAAAGAAACCCTTTAAAAAAGTAACCCTGGAAAGTGAGGTAGTTTCGTTGGGGCGACGACCTCTTAAAAAGTAACAGAGGTTAGCGAAGGTTTTTTCTAAATGGAAAACGCTTGACTGTTTGGCTAATAAGCCTAACAGACACAACCGTGGGCCATAACATTCCACTAAAAGAGCCACCTATTAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGGGGGTGCAGCCGCTCCC 'Haliclystus_antarcticus_ANT' GGTGACGCCTGCCCGATGGTTTATCCTAAGTTACATTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAACCTTTTCTCAAAACACTAAGGAAACGAGCAA-CCCTCTAACCTTAGTCTTAGGGAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTCTTTAATGAATCTTAGCCTGACTGTTTGGCTTATAAGCCTACCAGACACCTTCGTGAGCCATAATTTTCCATTTTAAGGGAAACCTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATG----------------------------------- 'Haliclystus_antarcticus_CHILE' GGTGACGCCTGCCCGATGGTTTATCCTAAGTTACATTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAACCTTTTCTCAAAACACTAAGGAAGCGAGCAA-CCCTCTAACCTTAGTCTTAGGAAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTCTTTAATGAATCTTAGCCTGACTGTTTGGCCTATAAGCCTACCAGACACCTTCGTGAGCCATAGTTTTCCATTTTAAGGGAAACCTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGA------------------------------------------- 'Haliclystus_borealis' GGTGACGCCTGCCCGATGGTTCATCCTAAGCTACATTAGCGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTACACCCTTTTCTTAAACCGGTTAGAAAATAAAAAC-CCTTTAAATCTAATTGATAGGAAAGGTGGCTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCAATGGTGAATTCTTAATGATAAAAGCCTGACTGTTTGGCTAATAAGCCTATCAGACACTATTGTGTGCCATAGTTTTCCATTTTAAATTATAATTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGTTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_californiensis' GGTGACGCCTGCCCGATGATCCATCCTAAGTTACATTAACGAACCCGGATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAGTGTTCCGCTGTCTCAAGGAAAACCCCTGTGAAATTGAAGGGACCGTGCATATGCGGTCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAGTCTTTCCCCTCCATCCTGAATAAAGGGGAAACCCCTCTAAATTCAGACTAAGGAAAGATAGGTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCTATGGTTATTTTGAATGAATTATAGCCTGACTGTTTGGCCTATAAGCCTACCAGACACTTCCGTGAGCCATACTTTTCCATTTTAAGGTAACCCTTAAAATGCCAAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_octoradiatus' GGTGACGCCTGCCCGATGGTTCATCCTAAGTTACATTAATGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCTGTGCATATGCGGCCCACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACCCTTTTCTTTAACACCTAAGAAAATGAGAAA-CCCTCTAACCTTAGTTTCGGGAAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTTTTTAATGATTTCCAGCCTGACTGTTTGGCCTATAAGCCTACCAGACACCTTCGTGAGCCATAGATTTCCATTTTAAATTAACACCTAAAATGCCATAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_sanjuanensis' GGTGACGCCTGCCCGATGGTTTATCCTAAGTTACATTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAATCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAACCTTTCCTCAAAACACTAAGAAAATGAGTAG-CCCTCTAATCTTAGTACTAGGAAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTCTTTAATGAATCTTAGCCTGACTGTTTGGCTTATAAGCCTACCAGACACTTTCGTGAGCCATAATTTTCCATTTTAGGGGCAACCCTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_stejnegeri' GGTGACGCCTGCCCGATGGTTTACCCTAAGTTACGTTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACCCTTTTCTTAAACCCCTAAGAAAATGAGAAA-CCCTCTACTCTTAGTTTCAGGAAAGGTTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGAAGGTTTTCTTTAATGATTTTTAGCCTGACTGTTTGGCTAATAAGCCTACCAGACACTTCCGTGAGCCATAGATTTCCATTTTATCTTAAAAGATAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_tenuis' GGTGACGCCTGCCCGATGGTTTAACCTAAACTACGTTAGTGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCCACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACCCTTTTCTTAAATTTGCTGGAAAATAAACAA-CTTTTAGATCCAGCTGGCAGGAAAGGGAGGTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCAATGGTGAACTCCCAATGATAAAAGCCTGACTGTTTGGTCTATCAACCTAACAGACACTATTGTGTGCCATAGTTTTCCATCTTAGGCAAACACCTAAGATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Kishinouyea_corbini' GGTGGCACCTGCCCAATGCTTTTATCTAA----CCGGGCTGAACCGAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCTCCTGTCTCTAGAAAAATCCCCGTGAAATTGAAGGCTCCGTGCATATGCGGAGCATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATGTTCCTCCTC--CTCTCAGGTGTGCCCCTAA-TCGGCCCCCACCTCCGCCCGGGGAACAAGGTAGTTTCGTTGGGGCGACGGCCTTCTAAACAGTACCGAAGGCTCACCAAGGTCACCATGAAATCATGATAGCCTGACTGCTAGGCCTATACGCCGCGCAGACACTCCCGTGGGTGATATCTTTCCACCCCGCT------ACCGGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATCTCCCCGAAGAGTTCTTATCGATGGGGAGGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGTAGCCGCTCTC 'Lipkea_ruspoliana' ----------------TGATCCCACCTAAACTATATTAGTGAACCCGGATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTAAAACGAGTGTTCCCCTGTCTCCTAAGAAGAAGCTATGAAATTGCAGGGGCCGTGCATATACGGCCCTTCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTTTCCCTGCTT-CCAAGATCCTCCATACAACCTAAAAGAGAGGTCTTTCCTAGGGAGAGAGGTAGTTTCGTTGGGGCGACGACCTTCCAAAAAGTAACGAAGGTTAGCTAAGGTATTG---AATAGATCAACGCCTGACTGTAAGGGCTATCCCCCGCACAGACACTCCCGTGGGCCTAAGCAATCCAGCCTGTATTAACCTACAGGGTGCCAAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTATTGAAGAGTTCTTATCGATAATAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_bathyphila_ARCTIC' GGTGACGCCTGCCCGATGACCCCTCTTAACCTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGCTCTCCTAAAGTAACCTGGTAACCCCAGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAACCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATACCCCGCACAGACACTCCTGTGGGTCTAAGTGATCCATCCCGTTTTAAAAGACTGGATGCCAAGACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGTTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_bathyphila_DEEPSEA' GGTGACGCCTGCCCGATGACCCCTCTTAACCTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGCTCTCCTAAAGTAACCTGGTAACCCCGGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAGCCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATCCCCCGCACAGACACTCCTGTGGGCCTAAGTGATCCACCCCGTTTCAAAAGACTGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_janetae' GGTGACGCCTGCCCGATGACCCCTCTTAA-CTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGCTCTCCTAAAGTAACCTGGTAACCCCAGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAACCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATACCCCGCACAGACACTCCTGTGGGTCTAAGTGATCCATCCCGTTTTAAAAGACTGGATGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGTTCTTATCGATAGTAAGA-------------------------------------------------T 'Lucernaria_quadricornis' GGTGACGCCTGCCCGATGATCCCTCTTAACCTATTTTAGGGAATAAGGATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCAGTATGAAAGGTACAACGAATGTTCCCCTGTCTCCTAAAAAGAAGCTATGAAATTGTAGGAGCCGTGCATATACGGCTCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTCCCTATCCTTATAAAATAACTTAGAAACCCTAACTTTATTTTTATTCTAGGGAGAGAGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAACCAAGGTTTTT---ATTAGATAATAGCCTGACTGTCAGGGCAATCTCCCGCACAGACACTTCCGTGGGTCTAAGTGATCCACTCCACTTTAAAAAGAGGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_sainthilairei' GGTGACGCCTGCCCGATGACCCCTCTTAACCTATTTTAGGGAATAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGTTCTCCTAAAGTAACCTGGCAACCCTAGCTTCACTTTAACCTTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAGCCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATCCCCCGCACAGACACTCCTGTGGGCCTAAGTGATCCACCCCGCTCTAAAAGGCTGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_campanulata' GGTGTCACCTGCCCAATGCTTTGAAATAACTT-ATTTAAGAAAACCAAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGTACGAATGTTCCCCTGTCTCTAGAAAAGGGCCCATGAAATTGTAGGGATTGTGAATATACAATCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAGGTTCCCCTTAA-ATCTAAAGGTTTGACCTAA-CCGGAAACCCTTTAT-TAGGGGGAACCAGGTAGTTTCGTTGGGGCGACGGCCTCCCACAAAGTAACGGAGGCTAACAATAATATTTTCATAATGAAAATTGTTTGACTGCTAGGGCTATTACCCGCGCAGACATCCATGTGGGTCATAAGTTTCCACCTTTAATAA---TTAGAGGTGCATAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGTTCTTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_cruxmelitensis' GGTGACGCCTGCCCAATGATTTGTCCTAAACT-CCTTAGTGAACCCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCATTTAATTGCTGACCGGTATGAAAGGTAGTACGAATGTTCCCCTGTCTCAAAGAAAGACTCCATGAAATTGTAAGGACCGTGCATATACGGTCTCCTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATCCGCTCCCCCCA--CCACTGAAACTAGGCCAACCGCTCTATCCTTCAGGCCTCGGGGAGCCCGTTAGTTTCGTTGGGGCGACGGCCTTTTAAAAAGTAACAAAGGCTAACAAAGATCTTTGACTAATCTATAGCATTTGACTGCCAGGGCTATACCCCGAACAGACACCTCCGTGGGTGATAGATTTCCACTTCTCTAGATT-GGAGCAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGTTCTTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCAGCTCTC 'Lucernariopsis_tasmaniensis' GGTGGCACCTGCCCAATGCTTTTATATAA----CTGGGTTGAACCGAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCCCCTGTCTCTAGAAAAATCCCCGTGAAATTGAAGGCTCCGTGCATATGCGGAGTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATATTCCTCCTC--CCACCCATTGATACCCTAA-CCGGAGCTTAATCTTCTTGGGGGAATAAGGTAGTTTCGTTGGGGCGACGGCCTTCTATACAGTACCGAAGGCTCACCAAGGTGACCATGGAATCATGCTAGCCTGACTGCTAGGCTTATAGGCCGCGCAGACACTAACGTGGGTGATACGTTTCCACCTTTTA------ATCAAGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATCTCCCCGAAGAGTTCTTATCGATGGGGAGGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_vanhoeffeni' GGTGACGCCTGCCCAATGCTTCTTCTTAATTC-TCCTGATCAATAGGAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGTACGAATGTTCCCCTGTCTCTAGAAAAGCGCCCGTGAAATTGAAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTCCTCTTTACCTCCAAAAGATCACCTTAA-CCAGTATTTCTTTAGATAGGGGGAATGTGTTAGTTTCGTTGGGGCGACGGCCTTCTACATAGTAACGAAGGCTAACAATGACTTATTTTTAATGAAAAATGTTTGACTGCTAGGGTAATAGCCCGCGCAGACACTATCGTGGGTCATACGTTTCCACCCTTAATTAAA-CTGAGGGTGCAAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTCACCGAAGAGTCCTTATCGATGGTGAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGTAGCCGCTCTC 'Manania_gwilliami' -GTGATGCCTGCCCAATGATGAGGGAATAAAAATCGTTTATAACCCCCATTCAATGGCCGCGGTATTCCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCAGTATGAATGGTAATACGAATGTCCCCCTGTCTCAAAAAAAGCTCCCGTGAAATTGAAGGGGCCGTGCATATACGGCCCACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATGTTCTTCTATC-CACTAAAATTTCACTCTAACCGATTAAAATTTTAATTCAGGAGAACTAGGTAGTTTCGTTGGGGCGACGGCCTCTTAAAAAGTACCAGAGGCTAGCCATGGTTTTTCTTTAATGTATTAAGCCTGACTGTAAGGCTTATCCGCCAAACAGACACTAACGTGAGCCATAGCTTTCCACATTTAGAGAGATCTAAATGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTCTCCTGGGGGTGCAACCGCTCCC 'Manania_uchidai' GGTGATGCCTGCCCAATGATGTGGAAATAAAGAATTTCTATAAACCCCATTCAATGGCCGCGGTATTCCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCAGTATGAATGGTAATACGAATGTCCCCCTGTCTCGAAAGAAGACCCCGTGAAATTGAAGAGGCCGTGCATATACGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACATTCTTCTTAT-CCCTAAAGTTTTATTCTAGCCGAAAACCACTTTAGTATTGGAGAATGAGGTAGTTTCGTTGGGGCGACGGCCTCTTAAAAAGTACCAGAGGCTAGCCATGGTTTTTATTTAATGAATTAAGCCTGACTGTTAGGCCTATAAGCCGTACAGACACTAACGTGAGCCATAGCTTTCCACAGAAAAGGTAACTTATCTGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTCTCCTGGGGGTGTAGCCGCTCCC 'Sasakiella_cruciformis' GGTGACACCTGCCCAATGCTTGAACTTAACCCTTTAAGGGTAACCCCAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCCCCTGTCTCTAGAAAAGATCCCGTGAAATTGAAGAGGCTGTGCATATACAGCCTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTACAAGTTCCTCTTT--TCTTAAAAGTCCACCTAAA-TCAGGATCACTTTTTATTAGGGGAACCCGATAGTTTCGTTGGGGCGACGGCCTCCTAAAAAGTAACGGAGGCTAGCCATGACTTAAGTTTAATGTATTTAGTTTGACTGCTAGGGCTATATCCCGCGCAGACACATTCGTGGGCCATAAATTTCCATCATTT-------TTTGTGATGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGTTCTTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Stenoscyphus_inabai' ------GCCTGCCCGATGATTCATCCTAAGCTAAATTAGCAAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGAGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTACACCCTTTTCTCAAGCACACTAGAAAAGAGATAA-CTTCTTAATCTAGTTAATAGGAAAGGAGGCTAGTTTCGTTGGGGCGACGACCTTTAAAAAAGTAACAAAGGTTAGCGAAGGTTAATTCTTAATGGTAAGCGCCTGACTGCCTGGCTAATATGCCTATCASACACTATTGTGAGCCATAGTTTTCCATTTTAAATCAAAATTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCATATCGATGACAAAGATTGCGACCTCGATGTTGAATTG?GGTATCCTGGGGGTGCAGCCG?TCCC 'Depastromorpha_sp_AUS' GGTGATGCCTGCCCAATGATTCATCCTAAATTTCCCAAATGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTAATACGAATGTCCCCCTGTCTCTGGAAAAATACCCGTGAAATTGAAGAAACCGTGCATATGCGGTTCAGCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACGCTTTCCTACACATTCTTATCGTTTAAACAACTTTTAACCGATGGAAACATGAAAAGTGAGGTAGTTTCGTTGGGGCGACGACCTCTTAAAAAGTAACAGAGGTTAACAAAGGTTATTTTTTAATGAAAACCGCTTGACTGTTTGACCAATACGTCTAACAGACACAATCGTGGGTCATAATTTTCCACTGAAAAGGAAACTTCTCAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGTTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGGGGGTGCAGCCGCTCCC 'Kishinouyea_sp_MOOREA' GGTGATACCTGCCCGATGCTTTGATCTAAT---TAAGGAAAAACTAAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCATTTAATTGCTGACCGGTATGAATGGTAACACGAATATTCCCCTGTCTCTAGAAAAATCCCCGTGAAATTGAAAGACCCGTGCATATGCGGGTTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATCTGTTCCCCTTA--CTACCCCACTCTCTATCAG-CTATAAAAGGTGATTTTTCGGGGAACATGTTAGTTTCGTTGGGGCGACGGCCTTCTAAAAAGTAACGAAGGCTAACCAAGGTTTCTAAGAATCTTTCACAGCTTGACTGCTAGGCTGATTTGCCGCGCAGGCACAACCGTGGGTGATAGTTTTCCACCTTCT-------CTCAAGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATATTTCCGAAGAGTTCTTATCGATGGAAATGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Kishinouyea_sp_NZ' GGTGACGCCTGCCCAATGCTTTACATTAACTCTACTAGATAAACCCGAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTATCACGAATATTCCCCTGTCTCTAGAAAAGAGTCCGTGAAATTGAAGGGGTTGTGCATATACAGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACGCTCCTCTCT--CTAAAAAAGATAACTCTAA-CCGAAGACTCTTTAATATAGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTCCAAAAAGTAACGAAGGCTAGCAAAGATCTCTCAAAAATGAGATAAATTTGACTGCTAGGGCTATCCCCCGCGCAGACATAATTGTGGGCCATAAATTTCCATTCAAACTAAAA----AGAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGCTCCTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGTAGCCGCTCTC 'Kishinouyea_sp_SAF' GGTGGCACCTGCCCAATGCTTTTATCTAA----TTAGGCTTAACCGAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCTCCTGTCTCTAGAAAAATTCCCGTGAAATTGGAAATTCCGTGCATATACGGAGTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATGTTCCTCCTC--TAACGCATTAACACACTAA-CCGTGTATTAATGTAGGAAGGGGAATAAGGTAGTTTCGTTGGGGCGACGGCCTTCTATACAGTACCGAAGGCTCACCAAGGTGATCATGCAATCATGAAAGCCTGACTGCTAGGCTTATTAGCCGCGCAGACACAAACGTGGGTGATACATTTCCATTCCTTC------ATCGGAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATCTCCCCGAAGAGTTCTTATCGATGGGGAGGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Lipkea_sp_JAPAN' GGTGATACCTGCCCAATGATCCCACCTAACCTATATTAGGGAACCTGGATTTAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCAATTAATTGCTGACCGGTATGAAAGGTAAAACGAGTGTTCCACTGTCTCCTAAGAAGGGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTCCCTTTAC-AACAAGTTCTTTGTATAACCTAAAAAAGACACTTACTCTAGGGAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAAAAGTAACGAAGGTTAGCTAAGGTATTT---AATAGACACTTGCCTGACTGTAAGGGATATACCCCGCACAGACACTATCGTGGGCCTAAGAAACCCACCCCGCACTTATATGTGGGGTGCCTAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTATTGAAGAGTTCTTATCGATAATAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCCGAGGGTGCAGCCGCTCTC 'Lucernaria_sp_EPR' GGTGACGCCTGCCCGATGACCCCTCTTAACCTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGTTCTCTTAAAGTAACCTGGTAACCCCAGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAGCCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATCCCCCGCACAGACACTCCTGTGGGCCTAAGTGATCCACCCCGTTTTAAAAGACGGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_sp_NZ' ---------AACCCT------------------TATGGAATAACCTAAGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGCATAACGAGTGTTCTCCTGTCTCAGAAAAATCCTCTATGAAATTGTAGAGGTCGTGCATATACGGCCTTCTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATCTTCTTTTCCTA--ATTTATATCTTCTGTTAAACCAACAAAAAGCTATTACCCGGAAAGAGTGTTAGTTTCGTTGGGGCGACGGCCTTTTAAAAAGTAACAAAGGCTCACAAAGAGTTATTAACAATATTTATCCTTTGACTGTTAGGGTTATAACCCAAACAGACACAAACGTGGGTTATAAATTTCCACCTAAATTAACT-----AGGTGCCATAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGTTCTTATCGATGACAAAGA------------------------------------------------- 'Stenoscyphus_sp_AUS' GGTGACGCCTGCCCGATGGTTCATCCTAAGTTACATTAACGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTACACCCTTTCCTTGAATTTGCTAGAAAGTAAATAA-CTTTTTAATCTAGCTAGCAGGAAAGACGGCTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCGATGGTTAAATATTAATGATAAAAGCCTGACTGCCTGGCCAATAAGCCTATCAGACACTATTGTGTGCCATAGATTTCCATTTTGAATCACAATTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 561; END; BEGIN TREES; Title '16S_ML_tree'; LINK Taxa = Taxa; TRANSLATE 1 'Craterolophus_convolvulus_GERMANY', 2 'Craterolophus_convolvulus_UK', 3 'Craterolophus_convolvulus_USA', 4 'Depastromorpha_africana', 5 'Haliclystus_antarcticus_ANT', 6 'Haliclystus_antarcticus_CHILE', 7 'Haliclystus_borealis', 8 'Haliclystus_californiensis', 9 'Haliclystus_octoradiatus', 10 'Haliclystus_sanjuanensis', 11 'Haliclystus_stejnegeri', 12 'Haliclystus_tenuis', 13 'Kishinouyea_corbini', 14 'Lipkea_ruspoliana', 15 'Lucernaria_bathyphila_ARCTIC', 16 'Lucernaria_bathyphila_DEEPSEA', 17 'Lucernaria_janetae', 18 'Lucernaria_quadricornis', 19 'Lucernaria_sainthilairei', 20 'Lucernariopsis_campanulata', 21 'Lucernariopsis_cruxmelitensis', 22 'Lucernariopsis_tasmaniensis', 23 'Lucernariopsis_vanhoeffeni', 24 'Manania_gwilliami', 25 'Manania_uchidai', 26 'Sasakiella_cruciformis', 27 'Stenoscyphus_inabai', 28 'Depastromorpha_sp_AUS', 29 'Kishinouyea_sp_MOOREA', 30 'Kishinouyea_sp_NZ', 31 'Kishinouyea_sp_SAF', 32 'Lipkea_sp_JAPAN', 33 'Lucernaria_sp_EPR', 34 'Lucernariopsis_sp_NZ', 35 'Stenoscyphus_sp_AUS'; TREE tree_1 = ((2:0.00180775,(1:1.0E-8,3:9.0E-8):1.0E-8):0.13197781,((21:0.2643327,(((14:0.07490942,32:0.08682788):0.10484112,(18:0.05577251,(33:4.6E-7,(19:0.01848837,(16:0.00355092,(15:0.00176809,17:0.00547308):0.01101409):0.00152468):0.00381764):0.04674587):0.02847645):0.2960784,(30:0.13450371,((20:0.19621292,23:0.1124166):0.03708499,(26:0.14530657,(29:0.21848609,(13:0.0558112,(22:0.03192702,31:0.09760631):0.04319369):0.13914032):0.24483934):0.04951442):0.03897391):0.11292689):0.05737206):0.05358183,(34:0.49575872,((24:0.05632896,25:0.09544226):0.24273761,((4:0.02996234,28:0.15291205):0.10745022,((12:0.06969203,(7:0.02284138,(27:0.05442185,35:0.0350225):0.01361484):0.0160903):0.05114903,((8:0.11090507,(6:0.00201123,(5:0.00197002,10:0.02657995):0.00320892):0.01036862):0.01915227,(9:0.02561024,11:0.02859552):0.00545913):0.05589971):0.1629553):0.10474431):0.09576706):0.03293194):0.13197781)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 561; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 561; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1456333362847; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7829830470773229887; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4473703847664522801; mqVersion 275; checksumv 0 3 4119393280 null getNumChars 561 numChars 561 getNumTaxa 35 numTaxa 35 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 425746.0 sumSquares -9.2233720368544737E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 650; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7829830470773229887 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 897.1456333332589.6778149696591277187; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1182 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;