#NEXUS [written Wed Feb 24 14:09:34 BRT 2016 by Mesquite version 2.75 (build 564) at SISBIOTAMAR_4/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=32; TAXLABELS 'Craterolophus_convolvulus_GERMANY' 'Craterolophus_convolvulus_UK' 'Craterolophus_convolvulus_USA' 'Depastromorpha_africana' 'Haliclystus_antarcticus_ANT' 'Haliclystus_antarcticus_CHILE' 'Haliclystus_borealis' 'Haliclystus_californiensis' 'Haliclystus_octoradiatus' 'Haliclystus_sanjuanensis' 'Haliclystus_tenuis' 'Haliclystus_stejnegeri' 'Lipkea_ruspoliana' 'Lucernaria_bathyphila_DEEPSEA' 'Lucernaria_janetae' 'Lucernaria_quadricornis' 'Lucernaria_sainthilairei' 'Lucernariopsis_campanulata' 'Lucernariopsis_cruxmelitensis' 'Lucernariopsis_tasmaniensis' 'Lucernariopsis_vanhoeffeni' 'Manania_gwilliami' 'Manania_uchidai' 'Stenoscyphus_inabai' 'Depastromorpha_sp_AUS' 'Kishinouyea_sp_MOOREA' 'Kishinouyea_sp_NZ' 'Kishinouyea_sp_SAF' 'Lipkea_sp_JAPAN' 'Lucernaria_sp_EPR' 'Lucernariopsis_sp_NZ' 'Stenoscyphus_sp_AUS' ; END; BEGIN CHARACTERS; TITLE 'ITS_alignment_matrix_ML'; DIMENSIONS NCHAR=314; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Craterolophus_convolvulus_GERMANY' CTTTAACATCACGTGTGGGGTAGAGATGCAGCATCTCTTTAAACAGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGAGGCGTCACGATTGTGACATCGTGTCCTTCGAAATGCAAGAGACGTGCCAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Craterolophus_convolvulus_UK' CTTTAACATCACGTGTGGGGTAGAGATGCAGCATCTCTTTAAACAGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGAGGCGTCACGATTGTGACATCGTGTCCTTCGAAATGCAAGAGACGTGCCAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Craterolophus_convolvulus_USA' CTTTAACATCACGTGTGGGGTAGAGATGCAGCATCTCTTTAAACAGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGAGGCGTCACGATTGTGACATCGTGTCCTTCGAAATGCAAGAGACGTGCCAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Depastromorpha_africana' CTCAACTATCACGTGTGGGGTAGGCACACTCAGTGGCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGACTTCATAAACCACGCGCGGCGTTGAGG-GTCACGATTGCGAGATTGTGTCTCTTGAAATTCATGAGACGCGTCAGGCCACAAACCATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_antarcticus_ANT' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGGCTTTAAATTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCACAATTGCGAGATTGTGTCTCTTGAAATCTATGAGACGCGTCAGGCCACAAAACATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_antarcticus_CHILE' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGGCTTTAAATTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCACAATTGCGAGATTGTGTCTCTTGAAATCTATGAGACGCGTCAGGCCACAAAACATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_borealis' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGCCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCACAATTGCGAGATTGTGTCTCTTGAAATCTATGAGACGCGTCAGGCCACAAACCATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_californiensis' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGGCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCACAATTGCGAGATTGTGTCTCTTGAAATTTAGGAGACGCGTCAGGCCACAAAACATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_octoradiatus' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGGCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCACAATTGCGAGATTGTGTCTCTTGAAATCAATGAGACGCGTCAGGCCACAAACCATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_sanjuanensis' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGGCTTTAAATTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCACAATTGCGAGATTGTGTCTCTTGAAATCTATGAGACGCGTCAGGCCACAAAACATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_tenuis' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGTCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCCCGCGCGGCGTTAATA-GTCACGATTGCGATATTGTGTCTCTTGAAATCTATGAGACGCGTCAGGCCACAAACCATCAATGACCTCAGATCAGGCAAGAC 'Haliclystus_stejnegeri' CTTAACCATCACGTGTGGGGTAGGCACACTCAGTGGCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCACAATTGCGAGATTGTGTCTCTTGAAATCTATGAGACGCGTCAGGCCACAAACCATCAATGACCTCAGATCAGGCAAGAC 'Lipkea_ruspoliana' ----------------------------------------------ACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGCGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAGGGAGCATGTCTGTCTGAGGGTCGATTAACAAGTCCACGCGCGGCGTTGAAGTGTCACGATTGCAAGATCGTGTCCTTCGAAATGCAAGAGACGTGCCAGGCCAAAAACCAACAATGACCTCA------------- 'Lucernaria_bathyphila_DEEPSEA' CTTTATCATCACAAGTGGGGTAGGCGCACTCCGCGCCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCTTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGTCCACGCGCGGCGTTGAGGCGTCACGATTGCGAGATCGTGTCCCTCGAAATTCAAGAGACGTGGCAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Lucernaria_janetae' CTTTATCATCACAAGTGGGGTAGGCGCACTCCGCGCCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCTTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGTCCACGCGCGGCGTTGAGGCGTCACGATTGCGAGATCGTGTCCCTCGAAATTCAAGAGACGTGCCAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Lucernaria_quadricornis' CTCTATCATCACAAGTGGGGTAGGCA-----TGCGCCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGAGGCGTCACGATTGCGACATCGTGTCCTTCGAAATGCAAGAGACGTGCCAGGCCAAAAACCATCAATGACCTCAGAT---------- 'Lucernaria_sainthilairei' CTTTATCATCACAAGTGGGGTAGGCGCACTCCGCGCCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCTTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGTCCACGCGCGGCGTTGAGGCGTCACGATTGCGAGATCGTGTCCTTCGAAATTCAAGAGACGTGCCAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Lucernariopsis_campanulata' CTTTATCATCACGTGTGGGGTAGGCACACTCAGTGCCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGGAGTGTCTCGATTGCGACATCGAGTCCTTCGAAATACATGAGACGCAACAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Lucernariopsis_cruxmelitensis' CCTTATCATCACGTGTGGGGTAGTCG-----GTCGACTTTAAACCGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATATGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAAACCACGCGCGGCGTTGAGGTGTCACGATTGCGAGATCGTGTCCTTCGAAATTCAAGAGACGTGACAGGCCAAAAAACATCAATGACCTCAGATCAGGCAAGAC 'Lucernariopsis_tasmaniensis' CTTTATCATCACGTGTGGGGTAGACACAGTCAGTGTCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGTCCACACGTGGCGTTGAAGTGTCACGATT-------------------------------------------------------------------------- 'Lucernariopsis_vanhoeffeni' CTTTATCATCACGTGTGGGGTAGGCACACTCAGTGCCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGAAGTGTCACGATTGCGAGATCGTGTCCTTCGAAATTGATGAGACGCAACAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Manania_gwilliami' CTTAACCATCACGTGTGGGGTAGGCGTACTAAACGTCTTTAAACTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'Manania_uchidai' CTTAACCATCACGTGTGGGGTAGGCGTACTAAACGCCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTCAAATCTCCACGCGCGGCGTTGAAGTGTCACGATTGCGAGATCGTGTCCTTCGAAATTCAAGAGACGCTTCAGGCCACAAACCAACAATGACCTCAGATCAGGCAAGAC 'Stenoscyphus_inabai' CTTAACCATCACGTGTGGGGTAGACACACTCAGTGTCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATCTAACAAACCACGCGCGGCGTTGAGA-GTCCCAATTGCGAGATTGTGTCTCTTGAAATCTCTGAGACGCGTCAGGCCACAA-CAATCAATGACCTCAGATCAGGCAAGAC 'Depastromorpha_sp_AUS' CTTAACCATCACGTGTGGGGTAGGCACGCTCAGTGACTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGACTTAACAAACCACGCGCGGCGTTGAGA-GTCACGATTGCGAGATCGTGTCTCTTCAAATCCATGAGACGCGTCAGGCCACAAACCATCAATGACCTCAGATCAGGCAAGAC 'Kishinouyea_sp_MOOREA' CTTTACTATCACGTGTGAGGTAGACGCAGTTAGCGTCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACACGTGGTGTTGAAGTGTCACGATTGAAAAATTGTGTCCTTCGAAGCGAATGAGACGCAACGGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Kishinouyea_sp_NZ' CTTTATCATCACGTGTGGGGTAGGCGCAGTTAGTGCCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGAAGTGTCACGATTGCGAGATCGTGTCCTTTGAAATCGATGAGACGCAACAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Kishinouyea_sp_SAF' CTTTATCATCACGTGTGGGGTAGACGCAGTCAGTGTCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGTCCACACGTGGCGTTGAAGTGTCACGATTGCGAGATTGTGTCCTTCGAAATGCATGAGACGCACCGGGCCAAAATCAATCAATGACCTCAGATCAGGCAAGAC 'Lipkea_sp_JAPAN' TTTTGTTACCTGCTGCACGGTGA--------AGCGCAT--------------------------------------------GAAAGAGGTGGTCGATAGATACGAGAGAGAGTG--------AGA---------------------------------------------------GAGACGCGCGTC---------GTCCATC--------------------------------------------------------------------------------ACTGACAATGACCTCAG------------ 'Lucernaria_sp_EPR' CTTTATCATCACAAGTGGGGTAGGCGCACTCCGCGCCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCTTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGTCCACGCGCGGCGTTGAGGCGTCACGATTGCGAGATCGTGTCCCTCGAAATTCAAGAGACGTGCCAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Lucernariopsis_sp_NZ' CTTGAACATCACGTGTGGGGTAGGCACACTCAGTGCCTTTAAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGATGCGATACGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTACAAGACCACGCGCGGCGTTGGAGTGTCACGATGGCAGGATCGTGTCCTTCGAAGTGCATGAGACTCAACAGGCCAAAAACCATCAATGACCTCAGATCAGGCAAGAC 'Stenoscyphus_sp_AUS' CTTAACCATCACGTGTGGGGTAGACACACTCAGTGTCTTTCAACTGACAACTTTTAACGGTGGATCTCTTGGCTCGTGCATCGATGAAGAACGCAGCCAGGTGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATTTTTGAACGCAAATGGCGCTCCTTGGCTCTCCAAGGAGCATGTCTGTCTGAGGGTCGATTTAACAAACCACGCGCGGCGTTGAGA-GTCCCAATTGCGAGATTGTGTCTCTTGAAATCTCGGAGACGCGTCAGGCCACAAACCATCAATGACCTCAGATCAGGCAAGAC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 314; END; BEGIN TREES; Title 'ITS_ML_tree'; LINK Taxa = Taxa; TRANSLATE 1 'Craterolophus_convolvulus_GERMANY', 2 'Craterolophus_convolvulus_UK', 3 'Craterolophus_convolvulus_USA', 4 'Depastromorpha_africana', 5 'Haliclystus_antarcticus_ANT', 6 'Haliclystus_antarcticus_CHILE', 7 'Haliclystus_borealis', 8 'Haliclystus_californiensis', 9 'Haliclystus_octoradiatus', 10 'Haliclystus_sanjuanensis', 11 'Haliclystus_tenuis', 12 'Haliclystus_stejnegeri', 13 'Lipkea_ruspoliana', 14 'Lucernaria_bathyphila_DEEPSEA', 15 'Lucernaria_janetae', 16 'Lucernaria_quadricornis', 17 'Lucernaria_sainthilairei', 18 'Lucernariopsis_campanulata', 19 'Lucernariopsis_cruxmelitensis', 20 'Lucernariopsis_tasmaniensis', 21 'Lucernariopsis_vanhoeffeni', 22 'Manania_gwilliami', 23 'Manania_uchidai', 24 'Stenoscyphus_inabai', 25 'Depastromorpha_sp_AUS', 26 'Kishinouyea_sp_MOOREA', 27 'Kishinouyea_sp_NZ', 28 'Kishinouyea_sp_SAF', 29 'Lipkea_sp_JAPAN', 30 'Lucernaria_sp_EPR', 31 'Lucernariopsis_sp_NZ', 32 'Stenoscyphus_sp_AUS'; TREE tree_1 = ((3:1.9E-7,(1:3.0E-8,2:1.4E-7):3.0E-8):0.02996657,((16:0.01096764,(13:0.03844613,(17:2.6E-7,(14:0.00337122,(15:1.3E-7,30:1.6E-7):1.3E-7):0.00334295):0.00931951):0.00521314):0.01292318,(19:0.04174554,(((21:2.4E-7,(27:0.00648234,(26:0.04234341,(20:0.00487719,28:8.1E-7):0.02011486):0.02779699):0.01087745):0.00341954,(29:6.55,(18:0.01265847,31:0.02831504):0.0029905):0.00249413):0.0183083,((22:0.01126436,23:9.6E-7):0.04657136,(4:0.01620859,(25:0.01570838,(11:0.01817612,((8:0.00690816,(6:2.7E-7,(5:2.3E-7,10:2.3E-7):2.3E-7):0.00340202):0.0034433,(12:2.5E-7,(9:0.00341984,(7:3.6E-7,(24:0.00701337,32:0.00340624):0.01408996):0.00693064):4.1E-7):4.1E-7):0.00354492):0.00530385):0.00803219):0.03250035):0.02477043):0.00829951):0.01331974):0.02996657)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 314; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 314; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1456333774234; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7399743663130912704; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1101438179423376178; mqVersion 275; checksumv 0 3 2582966132 null getNumChars 314 numChars 314 getNumTaxa 32 numTaxa 32 short true bits 15 states 15 sumSquaresStatesOnly 196419.0 sumSquares 196419.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 650; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7399743663130912704 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 867.1456333737366.7278944084731595982; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1182 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;