#NEXUS [written Wed Feb 24 15:56:38 BRT 2016 by Mesquite version 2.75 (build 564) at SISBIOTAMAR_4/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=35; TAXLABELS 'Craterolophus_convolvulus_GERMANY' 'Craterolophus_convolvulus_UK' 'Craterolophus_convolvulus_USA' 'Depastromorpha_africana' 'Haliclystus_antarcticus_ANT' 'Haliclystus_antarcticus_CHILE' 'Haliclystus_borealis' 'Haliclystus_californiensis' 'Haliclystus_octoradiatus' 'Haliclystus_sanjuanensis' 'Haliclystus_stejnegeri' 'Haliclystus_tenuis' 'Kishinouyea_corbini' 'Lipkea_ruspoliana' 'Lucernaria_bathyphila_ARCTIC' 'Lucernaria_bathyphila_DEEPSEA' 'Lucernaria_janetae' 'Lucernaria_quadricornis' 'Lucernaria_sainthilairei' 'Lucernariopsis_campanulata' 'Lucernariopsis_cruxmelitensis' 'Lucernariopsis_tasmaniensis' 'Lucernariopsis_vanhoeffeni' 'Manania_gwilliami' 'Manania_uchidai' 'Sasakiella_cruciformis' 'Stenoscyphus_inabai' 'Depastromorpha_sp_AUS' 'Kishinouyea_sp_MOOREA' 'Kishinouyea_sp_NZ' 'Kishinouyea_sp_SAF' 'Lipkea_sp_JAPAN' 'Lucernaria_sp_EPR' 'Lucernariopsis_sp_NZ' 'Stenoscyphus_sp_AUS' ; END; BEGIN CHARACTERS; TITLE '16S_alignment_matrix_PA'; DIMENSIONS NCHAR=561; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Craterolophus_convolvulus_GERMANY' GGTGACGCCTGCCCGATGATTTGGCCTAAACT-CTTTAGTTAACTCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATCACGAGTGTTCAACTGTCTCTGAAGAAGGCCCTGTGAAATTGTAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTTCCCGCC--TCTTAAGGCTTATAGGTAACCCCCTGTAAGCCTAATTTCGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTTAAAAAAGCAACAAAGGCTAACAAAGGTATGATATAAATGTATCCGACTTGACTACTAGGGGTATTTCCCGTGTAGACACATCCGTGAGTCATAGTATTCCACCATAGGTTAACACTTATGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTTGAAGAGCTCTTATCGATGACAAAGATTGCGA------------------------------------------- 'Craterolophus_convolvulus_UK' GGTGACGCCTGCCCGATGATTTGGCCTAAACT-CTTTAGTTAACTCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATCACGAGTGTTCAACTGTCTCTGAAGAAGGCCCTGTGAAATTGTAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTTCCCGCC--TCTTAAGGCTTATAGGTAACCCCCTGTAAGCCTAATTTCGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTTAAAAAAGCAACAAAGGCTAACAAAGGTGTGATATAAATGTATCCGACTTGACTACTAGGGGTATTTCCCGTGTAGACACATCCGTGAGTCATAGTATTCCACCATAGGTTAACACTTATGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTTGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAAGGTGTAGCCGCTTTC 'Craterolophus_convolvulus_USA' GGTGACGCCTGCCCGATGATTTGGCCTAAACT-CTTTAGTTAACTCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATCACGAGTGTTCAACTGTCTCTGAAGAAGGCCCTGTGAAATTGTAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTTCCCGCC--TCTTAAGGCTTATAGGTAACCCCCTGTAAGCCTAATTTCGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTTAAAAAAGCAACAAAGGCTAACAAAGGTATGATATAAATGTATCCGACTTGACTACTAGGGGTATTTCCCGTGTAGACACATCCGTGAGTCATAGTATTCCACCATAGGTTAACACTTATGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTTGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAAGGTGTAGCCGCTTTC 'Depastromorpha_africana' GGTGACGCCTGCCCGATGATTTGTCCTAAGTTTCTCAAATGAACCCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTCCCCCTGTCTCTGAAAAAACACCCGTGAAATTGAAGAAGCCGTGCATATGCGGCTTAACTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACGCTTTTCATTCACTTACTATTTCTAAAGAAACCCTTTAAAAAAGTAACCCTGGAAAGTGAGGTAGTTTCGTTGGGGCGACGACCTCTTAAAAAGTAACAGAGGTTAGCGAAGGTTTTTTCTAAATGGAAAACGCTTGACTGTTTGGCTAATAAGCCTAACAGACACAACCGTGGGCCATAACATTCCACTAAAAGAGCCACCTATTAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGGGGGTGCAGCCGCTCCC 'Haliclystus_antarcticus_ANT' GGTGACGCCTGCCCGATGGTTTATCCTAAGTTACATTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAACCTTTTCTCAAAACACTAAGGAAACGAGCAA-CCCTCTAACCTTAGTCTTAGGGAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTCTTTAATGAATCTTAGCCTGACTGTTTGGCTTATAAGCCTACCAGACACCTTCGTGAGCCATAATTTTCCATTTTAAGGGAAACCTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATG----------------------------------- 'Haliclystus_antarcticus_CHILE' GGTGACGCCTGCCCGATGGTTTATCCTAAGTTACATTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAACCTTTTCTCAAAACACTAAGGAAGCGAGCAA-CCCTCTAACCTTAGTCTTAGGAAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTCTTTAATGAATCTTAGCCTGACTGTTTGGCCTATAAGCCTACCAGACACCTTCGTGAGCCATAGTTTTCCATTTTAAGGGAAACCTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGA------------------------------------------- 'Haliclystus_borealis' GGTGACGCCTGCCCGATGGTTCATCCTAAGCTACATTAGCGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTACACCCTTTTCTTAAACCGGTTAGAAAATAAAAAC-CCTTTAAATCTAATTGATAGGAAAGGTGGCTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCAATGGTGAATTCTTAATGATAAAAGCCTGACTGTTTGGCTAATAAGCCTATCAGACACTATTGTGTGCCATAGTTTTCCATTTTAAATTATAATTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGTTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_californiensis' GGTGACGCCTGCCCGATGATCCATCCTAAGTTACATTAACGAACCCGGATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAGTGTTCCGCTGTCTCAAGGAAAACCCCTGTGAAATTGAAGGGACCGTGCATATGCGGTCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAGTCTTTCCCCTCCATCCTGAATAAAGGGGAAACCCCTCTAAATTCAGACTAAGGAAAGATAGGTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCTATGGTTATTTTGAATGAATTATAGCCTGACTGTTTGGCCTATAAGCCTACCAGACACTTCCGTGAGCCATACTTTTCCATTTTAAGGTAACCCTTAAAATGCCAAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_octoradiatus' GGTGACGCCTGCCCGATGGTTCATCCTAAGTTACATTAATGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCTGTGCATATGCGGCCCACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACCCTTTTCTTTAACACCTAAGAAAATGAGAAA-CCCTCTAACCTTAGTTTCGGGAAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTTTTTAATGATTTCCAGCCTGACTGTTTGGCCTATAAGCCTACCAGACACCTTCGTGAGCCATAGATTTCCATTTTAAATTAACACCTAAAATGCCATAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_sanjuanensis' GGTGACGCCTGCCCGATGGTTTATCCTAAGTTACATTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAATCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAACCTTTCCTCAAAACACTAAGAAAATGAGTAG-CCCTCTAATCTTAGTACTAGGAAAGGCTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGATGGTTTTCTTTAATGAATCTTAGCCTGACTGTTTGGCTTATAAGCCTACCAGACACTTTCGTGAGCCATAATTTTCCATTTTAGGGGCAACCCTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_stejnegeri' GGTGACGCCTGCCCGATGGTTTACCCTAAGTTACGTTAACGAACCTGAACTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCCCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACCCTTTTCTTAAACCCCTAAGAAAATGAGAAA-CCCTCTACTCTTAGTTTCAGGAAAGGTTGGTAGTTTCGTTGGGGCGACGACCTTTCAAAAAGTAACAAAGGTTAGCGAAGGTTTTCTTTAATGATTTTTAGCCTGACTGTTTGGCTAATAAGCCTACCAGACACTTCCGTGAGCCATAGATTTCCATTTTATCTTAAAAGATAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Haliclystus_tenuis' GGTGACGCCTGCCCGATGGTTTAACCTAAACTACGTTAGTGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCCACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACCCTTTTCTTAAATTTGCTGGAAAATAAACAA-CTTTTAGATCCAGCTGGCAGGAAAGGGAGGTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCAATGGTGAACTCCCAATGATAAAAGCCTGACTGTTTGGTCTATCAACCTAACAGACACTATTGTGTGCCATAGTTTTCCATCTTAGGCAAACACCTAAGATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC 'Kishinouyea_corbini' GGTGGCACCTGCCCAATGCTTTTATCTAA----CCGGGCTGAACCGAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCTCCTGTCTCTAGAAAAATCCCCGTGAAATTGAAGGCTCCGTGCATATGCGGAGCATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATGTTCCTCCTC--CTCTCAGGTGTGCCCCTAA-TCGGCCCCCACCTCCGCCCGGGGAACAAGGTAGTTTCGTTGGGGCGACGGCCTTCTAAACAGTACCGAAGGCTCACCAAGGTCACCATGAAATCATGATAGCCTGACTGCTAGGCCTATACGCCGCGCAGACACTCCCGTGGGTGATATCTTTCCACCCCGCT------ACCGGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATCTCCCCGAAGAGTTCTTATCGATGGGGAGGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGTAGCCGCTCTC 'Lipkea_ruspoliana' ----------------TGATCCCACCTAAACTATATTAGTGAACCCGGATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTAAAACGAGTGTTCCCCTGTCTCCTAAGAAGAAGCTATGAAATTGCAGGGGCCGTGCATATACGGCCCTTCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTTTCCCTGCTT-CCAAGATCCTCCATACAACCTAAAAGAGAGGTCTTTCCTAGGGAGAGAGGTAGTTTCGTTGGGGCGACGACCTTCCAAAAAGTAACGAAGGTTAGCTAAGGTATTG---AATAGATCAACGCCTGACTGTAAGGGCTATCCCCCGCACAGACACTCCCGTGGGCCTAAGCAATCCAGCCTGTATTAACCTACAGGGTGCCAAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTATTGAAGAGTTCTTATCGATAATAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_bathyphila_ARCTIC' GGTGACGCCTGCCCGATGACCCCTCTTAACCTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGCTCTCCTAAAGTAACCTGGTAACCCCAGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAACCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATACCCCGCACAGACACTCCTGTGGGTCTAAGTGATCCATCCCGTTTTAAAAGACTGGATGCCAAGACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGTTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_bathyphila_DEEPSEA' GGTGACGCCTGCCCGATGACCCCTCTTAACCTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGCTCTCCTAAAGTAACCTGGTAACCCCGGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAGCCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATCCCCCGCACAGACACTCCTGTGGGCCTAAGTGATCCACCCCGTTTCAAAAGACTGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_janetae' GGTGACGCCTGCCCGATGACCCCTCTTAA-CTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGCTCTCCTAAAGTAACCTGGTAACCCCAGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAACCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATACCCCGCACAGACACTCCTGTGGGTCTAAGTGATCCATCCCGTTTTAAAAGACTGGATGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGTTCTTATCGATAGTAAGA-------------------------------------------------T 'Lucernaria_quadricornis' GGTGACGCCTGCCCGATGATCCCTCTTAACCTATTTTAGGGAATAAGGATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCAGTATGAAAGGTACAACGAATGTTCCCCTGTCTCCTAAAAAGAAGCTATGAAATTGTAGGAGCCGTGCATATACGGCTCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTCCCTATCCTTATAAAATAACTTAGAAACCCTAACTTTATTTTTATTCTAGGGAGAGAGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAACCAAGGTTTTT---ATTAGATAATAGCCTGACTGTCAGGGCAATCTCCCGCACAGACACTTCCGTGGGTCTAAGTGATCCACTCCACTTTAAAAAGAGGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernaria_sainthilairei' GGTGACGCCTGCCCGATGACCCCTCTTAACCTATTTTAGGGAATAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGTTCTCCTAAAGTAACCTGGCAACCCTAGCTTCACTTTAACCTTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAGCCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATCCCCCGCACAGACACTCCTGTGGGCCTAAGTGATCCACCCCGCTCTAAAAGGCTGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_campanulata' GGTGTCACCTGCCCAATGCTTTGAAATAACTT-ATTTAAGAAAACCAAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGTACGAATGTTCCCCTGTCTCTAGAAAAGGGCCCATGAAATTGTAGGGATTGTGAATATACAATCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATAGGTTCCCCTTAA-ATCTAAAGGTTTGACCTAA-CCGGAAACCCTTTAT-TAGGGGGAACCAGGTAGTTTCGTTGGGGCGACGGCCTCCCACAAAGTAACGGAGGCTAACAATAATATTTTCATAATGAAAATTGTTTGACTGCTAGGGCTATTACCCGCGCAGACATCCATGTGGGTCATAAGTTTCCACCTTTAATAA---TTAGAGGTGCATAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGTTCTTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_cruxmelitensis' GGTGACGCCTGCCCAATGATTTGTCCTAAACT-CCTTAGTGAACCCAAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCATTTAATTGCTGACCGGTATGAAAGGTAGTACGAATGTTCCCCTGTCTCAAAGAAAGACTCCATGAAATTGTAAGGACCGTGCATATACGGTCTCCTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATCCGCTCCCCCCA--CCACTGAAACTAGGCCAACCGCTCTATCCTTCAGGCCTCGGGGAGCCCGTTAGTTTCGTTGGGGCGACGGCCTTTTAAAAAGTAACAAAGGCTAACAAAGATCTTTGACTAATCTATAGCATTTGACTGCCAGGGCTATACCCCGAACAGACACCTCCGTGGGTGATAGATTTCCACTTCTCTAGATT-GGAGCAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGTTCTTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCAGCTCTC 'Lucernariopsis_tasmaniensis' GGTGGCACCTGCCCAATGCTTTTATATAA----CTGGGTTGAACCGAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCCCCTGTCTCTAGAAAAATCCCCGTGAAATTGAAGGCTCCGTGCATATGCGGAGTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATATTCCTCCTC--CCACCCATTGATACCCTAA-CCGGAGCTTAATCTTCTTGGGGGAATAAGGTAGTTTCGTTGGGGCGACGGCCTTCTATACAGTACCGAAGGCTCACCAAGGTGACCATGGAATCATGCTAGCCTGACTGCTAGGCTTATAGGCCGCGCAGACACTAACGTGGGTGATACGTTTCCACCTTTTA------ATCAAGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATCTCCCCGAAGAGTTCTTATCGATGGGGAGGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_vanhoeffeni' GGTGACGCCTGCCCAATGCTTCTTCTTAATTC-TCCTGATCAATAGGAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGTACGAATGTTCCCCTGTCTCTAGAAAAGCGCCCGTGAAATTGAAGGGGCCGTGCATATACGGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATTAGTTCCTCTTTACCTCCAAAAGATCACCTTAA-CCAGTATTTCTTTAGATAGGGGGAATGTGTTAGTTTCGTTGGGGCGACGGCCTTCTACATAGTAACGAAGGCTAACAATGACTTATTTTTAATGAAAAATGTTTGACTGCTAGGGTAATAGCCCGCGCAGACACTATCGTGGGTCATACGTTTCCACCCTTAATTAAA-CTGAGGGTGCAAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTCACCGAAGAGTCCTTATCGATGGTGAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGTAGCCGCTCTC 'Manania_gwilliami' -GTGATGCCTGCCCAATGATGAGGGAATAAAAATCGTTTATAACCCCCATTCAATGGCCGCGGTATTCCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCAGTATGAATGGTAATACGAATGTCCCCCTGTCTCAAAAAAAGCTCCCGTGAAATTGAAGGGGCCGTGCATATACGGCCCACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATGTTCTTCTATC-CACTAAAATTTCACTCTAACCGATTAAAATTTTAATTCAGGAGAACTAGGTAGTTTCGTTGGGGCGACGGCCTCTTAAAAAGTACCAGAGGCTAGCCATGGTTTTTCTTTAATGTATTAAGCCTGACTGTAAGGCTTATCCGCCAAACAGACACTAACGTGAGCCATAGCTTTCCACATTTAGAGAGATCTAAATGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTCTCCTGGGGGTGCAACCGCTCCC 'Manania_uchidai' GGTGATGCCTGCCCAATGATGTGGAAATAAAGAATTTCTATAAACCCCATTCAATGGCCGCGGTATTCCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCAGTATGAATGGTAATACGAATGTCCCCCTGTCTCGAAAGAAGACCCCGTGAAATTGAAGAGGCCGTGCATATACGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACATTCTTCTTAT-CCCTAAAGTTTTATTCTAGCCGAAAACCACTTTAGTATTGGAGAATGAGGTAGTTTCGTTGGGGCGACGGCCTCTTAAAAAGTACCAGAGGCTAGCCATGGTTTTTATTTAATGAATTAAGCCTGACTGTTAGGCCTATAAGCCGTACAGACACTAACGTGAGCCATAGCTTTCCACAGAAAAGGTAACTTATCTGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTCTCCTGGGGGTGTAGCCGCTCCC 'Sasakiella_cruciformis' GGTGACACCTGCCCAATGCTTGAACTTAACCCTTTAAGGGTAACCCCAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCCCCTGTCTCTAGAAAAGATCCCGTGAAATTGAAGAGGCTGTGCATATACAGCCTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTACAAGTTCCTCTTT--TCTTAAAAGTCCACCTAAA-TCAGGATCACTTTTTATTAGGGGAACCCGATAGTTTCGTTGGGGCGACGGCCTCCTAAAAAGTAACGGAGGCTAGCCATGACTTAAGTTTAATGTATTTAGTTTGACTGCTAGGGCTATATCCCGCGCAGACACATTCGTGGGCCATAAATTTCCATCATTT-------TTTGTGATGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGTTCTTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Stenoscyphus_inabai' ------GCCTGCCCGATGATTCATCCTAAGCTAAATTAGCAAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGAGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTACACCCTTTTCTCAAGCACACTAGAAAAGAGATAA-CTTCTTAATCTAGTTAATAGGAAAGGAGGCTAGTTTCGTTGGGGCGACGACCTTTAAAAAAGTAACAAAGGTTAGCGAAGGTTAATTCTTAATGGTAAGCGCCTGACTGCCTGGCTAATATGCCTATCASACACTATTGTGAGCCATAGTTTTCCATTTTAAATCAAAATTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCATATCGATGACAAAGATTGCGACCTCGATGTTGAATTG?GGTATCCTGGGGGTGCAGCCG?TCCC 'Depastromorpha_sp_AUS' GGTGATGCCTGCCCAATGATTCATCCTAAATTTCCCAAATGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCTGTATCAAAGGTAATACGAATGTCCCCCTGTCTCTGGAAAAATACCCGTGAAATTGAAGAAACCGTGCATATGCGGTTCAGCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACGCTTTCCTACACATTCTTATCGTTTAAACAACTTTTAACCGATGGAAACATGAAAAGTGAGGTAGTTTCGTTGGGGCGACGACCTCTTAAAAAGTAACAGAGGTTAACAAAGGTTATTTTTTAATGAAAACCGCTTGACTGTTTGACCAATACGTCTAACAGACACAATCGTGGGTCATAATTTTCCACTGAAAAGGAAACTTCTCAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGTTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGGGGGTGCAGCCGCTCCC 'Kishinouyea_sp_MOOREA' GGTGATACCTGCCCGATGCTTTGATCTAAT---TAAGGAAAAACTAAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCATTTAATTGCTGACCGGTATGAATGGTAACACGAATATTCCCCTGTCTCTAGAAAAATCCCCGTGAAATTGAAAGACCCGTGCATATGCGGGTTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATCTGTTCCCCTTA--CTACCCCACTCTCTATCAG-CTATAAAAGGTGATTTTTCGGGGAACATGTTAGTTTCGTTGGGGCGACGGCCTTCTAAAAAGTAACGAAGGCTAACCAAGGTTTCTAAGAATCTTTCACAGCTTGACTGCTAGGCTGATTTGCCGCGCAGGCACAACCGTGGGTGATAGTTTTCCACCTTCT-------CTCAAGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATATTTCCGAAGAGTTCTTATCGATGGAAATGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Kishinouyea_sp_NZ' GGTGACGCCTGCCCAATGCTTTACATTAACTCTACTAGATAAACCCGAAGTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTATCACGAATATTCCCCTGTCTCTAGAAAAGAGTCCGTGAAATTGAAGGGGTTGTGCATATACAGCCCACTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACGCTCCTCTCT--CTAAAAAAGATAACTCTAA-CCGAAGACTCTTTAATATAGGGGAGTGAGGTAGTTTCGTTGGGGCGACGGCCTTCCAAAAAGTAACGAAGGCTAGCAAAGATCTCTCAAAAATGAGATAAATTTGACTGCTAGGGCTATCCCCCGCGCAGACATAATTGTGGGCCATAAATTTCCATTCAAACTAAAA----AGAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACCGAAGAGCTCCTATCGATGGTAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGTAGCCGCTCTC 'Kishinouyea_sp_SAF' GGTGGCACCTGCCCAATGCTTTTATCTAA----TTAGGCTTAACCGAAAGTCAATGGCCGCGGTATTTCTGACCGTGACAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGTAGCACGAATATTCTCCTGTCTCTAGAAAAATTCCCGTGAAATTGGAAATTCCGTGCATATACGGAGTATTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATATGTTCCTCCTC--TAACGCATTAACACACTAA-CCGTGTATTAATGTAGGAAGGGGAATAAGGTAGTTTCGTTGGGGCGACGGCCTTCTATACAGTACCGAAGGCTCACCAAGGTGATCATGCAATCATGAAAGCCTGACTGCTAGGCTTATTAGCCGCGCAGACACAAACGTGGGTGATACATTTCCATTCCTTC------ATCGGAGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATCTCCCCGAAGAGTTCTTATCGATGGGGAGGATTGCGACCTCGATGTTGAATTGTGGTATCCTGAGGGTGCAGCCGCTCTC 'Lipkea_sp_JAPAN' GGTGATACCTGCCCAATGATCCCACCTAACCTATATTAGGGAACCTGGATTTAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCAATTAATTGCTGACCGGTATGAAAGGTAAAACGAGTGTTCCACTGTCTCCTAAGAAGGGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTCCCTTTAC-AACAAGTTCTTTGTATAACCTAAAAAAGACACTTACTCTAGGGAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAAAAGTAACGAAGGTTAGCTAAGGTATTT---AATAGACACTTGCCTGACTGTAAGGGATATACCCCGCACAGACACTATCGTGGGCCTAAGAAACCCACCCCGCACTTATATGTGGGGTGCCTAAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTATTGAAGAGTTCTTATCGATAATAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCCGAGGGTGCAGCCGCTCTC 'Lucernaria_sp_EPR' GGTGACGCCTGCCCGATGACCCCTCTTAACCTACTTTAGGGAACAAGGGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAAAGGTATAACGAACGTTCCCCTGTCTCCTAAAAAGTGGCTATGAAATTGTAGGGGCCGTGCATATACGGCCCATCTGTAAGACGAAAAGACCCTATTGAGCTTTACTATACTCTTCCTGTTCTCTTAAAGTAACCTGGTAACCCCAGCTTTATTTTAACCCTAGGAAGAGGGGTAGTTTCGTTGGGGCGACGACCTTCCAAACAGTAACGAAGGTTAGCCAAGGTTCTT--AAATAGAAAGTAGCCTGACTGTTAGGGCTATCCCCCGCACAGACACTCCTGTGGGCCTAAGTGATCCACCCCGTTTTAAAAGACGGGGTGCCAAAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTACTGAAGAGCTCTTATCGATAGTAAAGATTGCGACCTCGATGTTGAATTGCGGTATCCTGAGGGTGCAGCCGCTCTC 'Lucernariopsis_sp_NZ' ---------AACCCT------------------TATGGAATAACCTAAGTTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCGGTATGAATGGCATAACGAGTGTTCTCCTGTCTCAGAAAAATCCTCTATGAAATTGTAGAGGTCGTGCATATACGGCCTTCTTGTAAGACGAAAAGACCCTATTGAGCTTTACTATCTTCTTTTCCTA--ATTTATATCTTCTGTTAAACCAACAAAAAGCTATTACCCGGAAAGAGTGTTAGTTTCGTTGGGGCGACGGCCTTTTAAAAAGTAACAAAGGCTCACAAAGAGTTATTAACAATATTTATCCTTTGACTGTTAGGGTTATAACCCAAACAGACACAAACGTGGGTTATAAATTTCCACCTAAATTAACT-----AGGTGCCATAACATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGTTCTTATCGATGACAAAGA------------------------------------------------- 'Stenoscyphus_sp_AUS' GGTGACGCCTGCCCGATGGTTCATCCTAAGTTACATTAACGAACCTGAATTCAATGGCCGCGGTATTTCTGACCGTGATAATGTAGCGAAATCAATCGTCACTTAATTGCTGACCCGTATCAAAGGTATTACGAATGTTCCGCTGTCTCAAGAAAAACCCCTGTGAAATTGAAGGGGCCGTGCATATGCGGCCTACCTGTAAGACGAAAAGACCCTATTGAGCTTTACTACACCCTTTCCTTGAATTTGCTAGAAAGTAAATAA-CTTTTTAATCTAGCTAGCAGGAAAGACGGCTAGTTTCGTTGGGGCGACGACCTTTTAAAAAGTAACAAAGGTTAGCGATGGTTAAATATTAATGATAAAAGCCTGACTGCCTGGCCAATAAGCCTATCAGACACTATTGTGTGCCATAGATTTCCATTTTGAATCACAATTTAAAATGCCATAATATAAAAGTTACCATAGGGATAACAGCGTAATTTTGTCGAAGAGCTCTTATCGATGACAAAGATTGCGACCTCGATGTTGAATTGTGGTATCCTGGGGGTGTAGCCGCTCCC ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 561; END; BEGIN TREES; Title '16S_parsimony_tree'; LINK Taxa = Taxa; TRANSLATE 1 'Craterolophus_convolvulus_GERMANY', 2 'Craterolophus_convolvulus_UK', 3 'Craterolophus_convolvulus_USA', 4 'Depastromorpha_africana', 5 'Haliclystus_antarcticus_ANT', 6 'Haliclystus_antarcticus_CHILE', 7 'Haliclystus_borealis', 8 'Haliclystus_californiensis', 9 'Haliclystus_octoradiatus', 10 'Haliclystus_sanjuanensis', 11 'Haliclystus_stejnegeri', 12 'Haliclystus_tenuis', 13 'Kishinouyea_corbini', 14 'Lipkea_ruspoliana', 15 'Lucernaria_bathyphila_ARCTIC', 16 'Lucernaria_bathyphila_DEEPSEA', 17 'Lucernaria_janetae', 18 'Lucernaria_quadricornis', 19 'Lucernaria_sainthilairei', 20 'Lucernariopsis_campanulata', 21 'Lucernariopsis_cruxmelitensis', 22 'Lucernariopsis_tasmaniensis', 23 'Lucernariopsis_vanhoeffeni', 24 'Manania_gwilliami', 25 'Manania_uchidai', 26 'Sasakiella_cruciformis', 27 'Stenoscyphus_inabai', 28 'Depastromorpha_sp_AUS', 29 'Kishinouyea_sp_MOOREA', 30 'Kishinouyea_sp_NZ', 31 'Kishinouyea_sp_SAF', 32 'Lipkea_sp_JAPAN', 33 'Lucernaria_sp_EPR', 34 'Lucernariopsis_sp_NZ', 35 'Stenoscyphus_sp_AUS'; TREE PAUP_1 = ((1:0.0,2:0.09,3:0.0):9.2784925,((21:9.073456,(34:13.340284,((14:5.098756,32:7.079092):2.830786,(18:4.881265,(19:0.649608,(33:0.112637,(16:0.401316,(15:1.0,17:2.444444):0.954649):0.085714):0.60819):5.599122):5.071131):18.70464):5.887167):5.779501,(((20:10.152003,(23:6.831458,(26:7.492064,30:8.148406):3.385691):4.234475):4.251989,(29:9.614624,(31:4.590661,(13:4.536678,22:3.117561):1.5898):9.793715):13.101107):7.902985,((24:5.744129,25:5.988444):11.15816,((4:4.49695,28:8.979754):5.999819,((12:4.859667,(7:1.108041,(27:4.393823,35:2.552983):1.321752):2.566508):2.664572,(8:7.400089,((10:1.290033,(5:0.282051,6:0.318167):0.756605):0.931725,(9:2.117141,11:1.630921):0.910422):3.25125):5.314987):5.88838):9.925167):7.774005):5.690122):9.2784925)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 561; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 561; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1456340198280; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5998210454864396087; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2838185816862197019; mqVersion 275; checksumv 0 3 4119393280 null getNumChars 561 numChars 561 getNumTaxa 35 numTaxa 35 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 425746.0 sumSquares -9.2233720368544737E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 650; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5998210454864396087 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 867.1456340162860.137078926674080022; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1182 583; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;