#NEXUS
[written Tue Mar 22 15:10:24 CAT 2016 by Mesquite  version 3.04 (build 725) at B68PC139/137.215.68.139]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=16;
	TAXLABELS
		Neofusicoccum_kwambonambiense_CMW14023_Syz_cordatum Neofusicoccum_kwambonambiense_CMW14123_Syz_cordatum Neofusicoccum_parvum_CMW9081_Populus_nigra Neofusicoccum_parvum_CBS110301_V_vinifera Neofusicoccum_umdonicola_CMW14058_Syz_cordatum Neofusicoccum_umdonicola_CMW14106_Syz_cordatum CMW25198_M_indica CMW25214_M_indica CMW28377_M_indica CMW28412_M_indica MAN210236_M_indica MAN210316_M_indica MAN27316_M_indica MAR11328_S_birrea MAR21022_S_birrea MAR2134_S_birrea 
	;

END;


BEGIN CHARACTERS;
	TITLE  Character_Matrix;
	DIMENSIONS  NCHAR=420;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Neofusicoccum_kwambonambiense_CMW14023_Syz_cordatum  TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	Neofusicoccum_kwambonambiense_CMW14123_Syz_cordatum  TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	Neofusicoccum_parvum_CMW9081_Populus_nigra           TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
	Neofusicoccum_parvum_CBS110301_V_vinifera            TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCTGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
	Neofusicoccum_umdonicola_CMW14058_Syz_cordatum       TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCACGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
	Neofusicoccum_umdonicola_CMW14106_Syz_cordatum       TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCACGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
	CMW25198_M_indica                                    TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	CMW25214_M_indica                                    TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	CMW28377_M_indica                                    TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	CMW28412_M_indica                                    TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	MAN210236_M_indica                                   TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCACGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
	MAN210316_M_indica                                   TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGGAACAACTG
	MAN27316_M_indica                                    TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACTTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTACACAAACACGTAAAGAATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	MAR11328_S_birrea                                    ????????????????????????????????????????????????????????????????????GGCAGCACCATTTCTGGCGAGCACGGCCTGGACGGCTCTGGCGTGTAAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTAGGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCTGACAACTTCGTCTTCGGTCAGTCTGGCGCCGGTAACAACTG
	MAR21022_S_birrea                                    TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG
	MAR2134_S_birrea                                     TGCTGCTTTCTGGTTTGTTGCCAAAACACTCCCGCTCCCGCGCCCCCGCTGACGCGAATCGACACCACAGGCAGACCATTTCCGGCGAGCATGGCCTGGACGGCTCTGGCGTGTGAGTCTGCGCCGTTTCCCGCGCGAATGGCAATGGCTGACCCGCAGCAGCTACAATGGCACCTCCGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTACTCTCTCACTAATTGCACAAACACGTAAAGTATGGCAATCTTCTGAACGCGCAGCAGGCGTCCAACAACAAGTACGTTCCTCGTGCCGTCCTCGTCGACCTCGAGCCCGGCACCATGGATGCCGTCCGCGCCGGCCCCTTCGGCCAGCTCTTCCGCCCCGACAACTTCGTCTTCGGCCAGTCTGGCGCCGGTAACAACTG

;



END;

BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  420;

END;

BEGIN CODONS;
	CODESET * UNTITLED   =  universal:  1 -  420;


END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Jukes-Cantor':  1 -  420;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1458652224584;
		linkFile 'BT_pc_aln.phy_phyml_tree_treebase.nex';
		linkFile 'BT_pc_bootstrap_treebase.nex';
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 3075702459700767922;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 3895670744296456211;
			mqVersion 304;
			checksumv 0 3 770216063 null  getNumChars 420 numChars 420 getNumTaxa 16 numTaxa 16   short true   bits 15   states 15   sumSquaresStatesOnly 121564.0 sumSquares 121564.0 longCompressibleToShort false usingShortMatrix true   NumFiles 3 NumMatrices 1;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 700 464;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #3895670744296456211 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 600 392;
					setLocation 8 8;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow;
					colorCells  #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges off;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames off;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize off;
					toggleColorsPanel off;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.align.AlignToDropped.AlignToDropped;
				tell It;
					gapCosts 8 3 2 2;
					subCosts  10 5 10 10 10 5 5 10 10 10 5 10;
				endTell;
				getEmployee #mesquite.molec.ColorByAA.ColorByAA;
				tell It;
					emphasizeDegeneracy off;
				endTell;
				getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		endTell;
end;