#NEXUS [written Sat May 14 12:00:11 EDT 2016 by Mesquite version 2.75 (build 566) at Smittium.local/10.20.13.98] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS Homo_sapiens Danio_rerio Bos_taurus Canis_lupus_familiaris Amanita_thiersii Armillaria_mellea Piloderma_croceum Mucor_circinelloides Umbelopsis_ramanniana Penicillium_expansum Lichtheimia_hyalospora Hesseltinella_vesiculosa Aspergillus_clavatus Backusella_circina Smittium_culicis_GSMNP Arthroderma_benhamiae Rhizopus_oryzae Smittium_culicis_ID206W2 Smittium_mucronatum Zancudomyces_culisetae Aedes_aegypti Anopheles_gambiae Simulium_vittatum Culex_quinquefasciatus Arabidopsis_lyrata ; END; BEGIN CHARACTERS; TITLE Nucleotide_Alignment; DIMENSIONS NCHAR=912; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Homo_sapiens ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTTGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACCATCGAGAACGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGTGACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCTGATCAGCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCTTGCACCTGGTACTCCGTCTCAGAGGTGGGATGCAAATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGTGACACTATCGAGAACGTCAAAGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCTACCCTGCACCTGGTGCTCCGTCTCAGAGGTGGG Danio_rerio ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCCTCGAGGTCGAGCCCAGCGACACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGAAAACAGTTAGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACCATCACTCTAGAGGTGGAACCAAGCGACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATTCAGAAAGAGTCCACCCTCCACCTGGTGCTGCGTCTGAGAGGCGGTATGCAGATCTTCGTCAAGACTCTGACAGGAAAAACCATCACTCTTGAGGTCGAGCCCAGTGACACCATTGAGAACGTGAAAGCCAAGATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCATCTTGTTCTCCGCCTCAGGGGCGGCATGCAGATCTTCGTGAAGACGCTGACTGGAAAAACCATCACTTTGGAGGTCGAGCCCAGCGACACCATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGCATCCCACCTGACCAGCAGCGTCTTATCTTTGCCGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCTGACTATAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTCAGGGGTGGT Bos_taurus ATGCAGATCTTCGTGAAGACCTTGACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGGCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGGGATGCAGATCTTCGTGAAGACCTTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCTCAAGGGGAGGT Canis_lupus_familiaris ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGCATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGCCTCAGGGGGGGC Amanita_thiersii ATGCAGATTTTTGTCAAGACACTCACCGGGAAGACAATTACGTTGGAGGTCGAGTCATCTGACACCATCGACAACGTCAAAGCGAAGATTCAAGATAAGGAGGGTATCCCTCCGGACCAGCAGCGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACCCTTTCTGACTACAACATTCAGAAGGAATCCACCCTTCATCTCGTCCTTCGTCTGCGTGGTGGTATGCAGATTTTCGTCAAGACTCTGACTGGCAAGACCATCACACTTGAGGTCGAGTCGTCAGACACCATTGACAATGTCAAAGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGATCAGCAACGACTGATCTTCGCTGGCAAGCAATTAGAGGACGGTCGCACACTCTCTGACTACAACATTCAGAAGGAATCCACCCTTCACCTTGTCCTCCGTCTCCGCGGTGGCATGCAAATTTTTGTCAAGACTCTTACTGGTAAAACAATTACATTGGAAGTTGAGTCGTCGGATACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAACAACGTTTAATTTTCGCGGGGAAACAGCTTGAGGACGGTCGTACGCTCTCCGACTACAATATCCAGAAAGAGTCAACACTACACCTTGTTCTCCGTCTGCGTGGTGGCATGCAGATTTTTGTGAAGACTTTGACCGGCAAGACCATTACGCTTGAAGTCGAGTCATCGGACACGATAGACAATGTGAAGGCGAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAGCAGAGACTTATATTTGCTGGAAAGCAGTTGGAGGATGGAAGGACCCTTTCTGATTATAATATTCAAAAAGAGTCAACTCTTCATCTTGTTCTCCGTCTTCGTGGTGGT Armillaria_mellea ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGCTCGAGGTCGAATCGTCCGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCAACAACGACTCATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTTTGTCCGACTATAACATCCAGAAAGAGTCCACTCTCCACCTTGTTCTTCGTCTCCGTGGTGGCATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACAATCACCCTCGAGGTGGAGTCTTCCGATACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAAGGCATTCCCCCGGACCAGCAGCGTCTCATCTTTGCTGGGAAGCAGTTGGAAGATGGCCGTACGCTCTCCGATTACAACATCCAGAAAGAGTCCACGCTTCATCTTGTGCTTCGTCTGCGAGGTGGAATGCAGATCTTCGTCAAGACATTGACGGGGAAGACCATCACGCTGGAGGTTGAATCGTCGGATACCATCGATAACGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAGCAGCGTCTCATTTTTGCTGGCAAACAGTTGGAGGATGGCCGGACCCTCTCTGACTACAACATTCAGAAGGAATCCACACTGCACCTTGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTCGTCAAGACGCTCACTGGCAAGACGATCACCCTCGAGGTGGAATCTTCAGATACCATTGACAATGTGAAAGCCAAGATACAGGACAAGGAAGGTATTCCTCCCGATCAGCAACGACTTATTTTCGCCGGCAAACAGCTGGAAGATGGTCGCACGTTGTCGGATTACAATATCCAGAAGGAGAGTACCCTTCACTTGGTCCTTCGCCTTCGTGGTGGC Piloderma_croceum ATGCAGATCTTCGTCAAGACCCTCACAGGCAAGACGATAACCCTTGAGGTCGAGTCTTCGGACACAATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAAGGCATTCCCCCCGACCAACAGCGCCTTATCTTCGCTGGTAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTATAACATCCAGAAGGAATCGACTCTTCACCTTGTCCTGCGTCTCCGCGGCGGCATGCAGATTTTCGTTAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAATCATCTGACACGATCGACAACGTCAAGGCGAAAATTCAAGACAAGGAGGGCATTCCTCCCGACCAACAGCGCCTTATCTTCGCTGGCAAGCAGCTCGAAGACGGTCGCACTCTCTCCGATTATAATATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGTGGGATGCAAATTTTCGTGAAGACGTTGACCGGCAAGACGATCACTCTCGAGGTTGAATCCTCCGACACGATCGATAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGTCTTATCTTCGCTGGCAAACAGCTCGAGGACGGTCGAACTCTTTCTGATTATAACATCCAGAAGGAGTCTACTCTCCATCTCGTTCTCCGTCTTCGTGGTGGGATGCAAATTTTCGTGAAGACGTTGACCGGCAAGACCATTACTCTCGAGGTTGAATCGTCAGACACGATCGATAATGTTAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGACGCACGTTGTCGGATTATAATATCCAAAAGGAGAGCACACTCCACTTGGTGCTTCGTCTGCGCGGTGGA Mucor_circinelloides ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTTGAGTCCTCTGACTCCATTGAGAACGTAAAGCAAAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTGGAAGATGGCCGCTCTCTCTCTGATTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACCCTTACTGGTAAAACTATCACTCTTGAGGTTGAATCATCCGATTCTATTGAGAACGTAAAGCAAAAGATCCAAGACAAGGAAGGTATTCCCCCAGACCAACAACGTCTTATCTTTGCTGGTAAGCAATTGGAGGATGGCCGCTCTCTCTCTGACTACAACATTCAAAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACTATCACATTGGAGGTCGAGTCTTCCGATTCCATTGAGAATGTCAAGCAAAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAGGATGGTCGTTCCCTCTCTGACTACAACATTCAAAAGGAATCTACTCTTCACTTGGTCCTTCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAAACTCTGACTGGTAAGACCATTACCTTGGAAGTGGAATCATCCGATTCCATTGAGAATGTCAAGCAAAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAACAACGTCTCATTTTCGCTGGCAAGCAACTCGAAGATGGTCGCTCTCTTTCTGATTATAACATTCAAAAGGAATCCACCCTCCACTTGGTCCTTCGTCTCCGTGGTGGT Umbelopsis_ramanniana ATGCAAATCTTCGTTAAGACCTTGACCGGAAAGACCATCACTCTGGAAGTTGAGTCATCCGATACCATTGACAATGTTAAGCAAAAGATTCAAGACAAGGAAGGTATCCCACCGGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTCCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAGTCATCCGATACCATTGACAATGTTAAGCAAAAGATTCAAGACAAGGAAGGTATTCCACCGGACCAACAACGTCTCATCTTCGCTGGTAAGCAGCTTGAGGACGGACGCACTCTCTCTGACTACAACATCCAAAAGGAATCCACACTTCATTTGGTCCTCCGTCTTCGTGGTGGTATGCAAATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAATCATCCGACACCATTGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCACCGGACCAACAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAACATCCAAAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTTCGTGGTGGTATGCAGATTTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTTGAAGTTGAATCATCCGACACCATTGACAACGTGAAGCAAAAGATCCAAGACAAGGAAGGTATCCCACCGGACCAACAACGTCTCATCTTCGCTGGTAAGCAACTTGAGGACGGCCGTACTCTTTCCGACTACAACATCCAAAAGGAATCTACTCTCCATTTGGTCCTTCGTCTTCGTGGCGGT Penicillium_expansum ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTTCGGATTATAATATCCAAAAGGAGTCCACTCTCCACCTGGTCCTTCGCCTCCGTGGCGGTATGCAAATCTTCGTTAAGACCCTAACTGGAAAGACGATCACCCTCGAGGTCGAGTCTTCTGACACTATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTTCTGATTATAACATTCAGAAGGAATCCACACTTCACCTTGTCCTCCGTCTACGTGGTGGCATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTCGAGGTTGAGAGCTCAGATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAACGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACGCTGTCTGATTATAACATTCAAAAAGAATCCACACTTCACCTTGTCCTCCGTCTACGTGGTGGTATGCAAATCTTTGTCAAGACACTTACCGGCAAGACTATCACACTTGAGGTCGAGAGCTCAGACACCATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGACGTACTCTTTCGGACTACAACATCCAGAAGGAGTCCACTCTCCACCTGGTGTTGCGTCTGCGTGGCGGC Lichtheimia_hyalospora ATGCAAATCTTCGTCAAGACCCTTACTGGCAAAACCATCACTTTGGAGGTGGAGTCATCTGATTCAATCGAGAACGTCAAGAACAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAGCAACGTCTCATCTTTGCCGGCAAGCAACTTGAAGATGGTCGCACCCTCTCCGATTACAACATTCAAAAGGAATCCACTCTTCACTTGGTACTTCGCCTTCGTGGTGGTATGCAAATCTTTGTCAAGACTCTCACTGGCAAGACCATTACGCTGGAAGTGGAATCATCCGATTCTATTGAGAACGTCAAGAACAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAGCAGCGCTTGATTTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGATTACAATATCCAAAAGGAATCTACCCTTCACTTGGTATTGCGTCTTCGTGGTGGTATGCAGATCTTTGTCAAGACTTTGACTGGTAAAACTATCACCTTGGAAGTGGAATCATCCGATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATTCCTCCAGATCAGCAGCGCTTGATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACCCTCTCTGATTACAATATCCAAAAGGAATCTACTTTGCACTTGGTGCTTCGTCTACGTGGTGGTATGCAAATCTTTGTAAAGACATTGACTGGCAAGACCATTACTTTGGAAGTGGAATCATCCGATTCTATTGAAAATGTCAAGAACAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAGCAGCGCTTGATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACCCTCTCTGATTACAATATCCAAAAGGAATCCACTCTTCACTTGGTGCTTCGTCTCCGTGGTGGT Hesseltinella_vesiculosa ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCGGACTCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAACAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGTATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCGGACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGTATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCGGACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATCCAAAAGGAATCTACTCTCCACCTTGTGCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCGGACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGGT Aspergillus_clavatus ATGCAGATCTTCGTTAAGACTCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCGAGCGACACTATTGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCACCTGATCAGCAGCGTTTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTCTCCGACTACAACATTCAGAAGGAGTCTACTCTGCACCTCGTTCTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTAGCGATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGCATCCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAATCCACTCTTCACCTTGTCCTCCGTCTGCGTGGTGGTATGCAGATCTTTGTCAAGACCCTTACCGGAAAGACCATCACATTAGAGGTTGAGTCTTCAGACACAATCGATAATGTGAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACCTTGTCCGACTACAACATCCAAAAAGAATCGACTCTTCACCTTGTCCTCCGTTTGCGTGGTGGTATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATCACACTGGAGGTGGAGTCTTCGGATACTATCGACAATGTGAAGAGCAAGATCCAAGATAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTTATATTTGCTGGTAAGCAGCTGGAAGATGGGCGGACACTCTCCGACTATAACATCCAGAAGGAGAGCACACTGCACCTGGTGCTGCGTCTCCGTGGTGGT Backusella_circina ???????????????????????????????????????ACTTTGAAGGTTGAGTCTTCCGACTCTATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCACCAGACCAGCAACGTCTTATCTTTGCTGGCAAGCAATTAGAAGATGGCCGCACTCTCTCCGACTACAATATCCAGAAGGAATCTACTCTTCATCTTGTTCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTCAAGACCTTGACTGGTAAGACTATTACCTTGGAAGTTGAGTCCTCTGACTCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAGCAGCGTCTTATCTTTGCCGGTAAGCAATTAGAAGATGGCCGCACTCTCTCTGAC---AATATCCAAAAGGAATCTACTCTTCATCTTGTTCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTTGAATCTTCCGACTCCATCGATAACGTCAAACAAAAGATTCAAGACAAGGAAGGTATCCCCCCAGACCAGCAGCGTCTTATTTTCGCTGGTAAGCAGTTGGAGGATGGTCGCACCTTGTCTGATTACAACATCCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCTTGACCGGTAAGACCATCACCTTGGAGGTTGAATCTTCCGATTCGATTGACAATGTCAAGCAAAAGATTCAGGATAAAGAAGGTATTCCCCCAGACCAGCAACGTCTCATCTTTGCCGGTAAGCAGTTGGAGGATGGTCGCACCTTGTCTGACTATAACATTCAGAAGGAGTCTACTCTTCATTTGGTGCTTCGTCTTCGTGGTGGT Smittium_culicis_GSMNP ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAAATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAACATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCGACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAACATCCAAAAAGAATCTACTCTTCATTTGGTGCTTCGTCTTAGAGGTGGT Arthroderma_benhamiae ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATTTTCGTCAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAGTCCAGCGACACTATTGACAACGTCAAGACCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGCGCCTGATCTTCGCAGGAAAACAACTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTGCACCTCGTCCTTCGTCTCCGCGGTGGCATGCAAATCTTCGTGAAAACTCTGACCGGCAAGACCATCACTCTTGAGGTCGAATCCAGCGACACCATCGACAACGTCAAGACCAAGATCCAGGACAAAGAAGGCATCCCACCAGACCAGCAGCGCCTGATCTTTGCAGGAAAACAGCTCGAGGACGGCCGGACCCTCTCGGACTACAACATCCAAAAGGAATCAACTCTCCACCTTGTCCTGCGTCTGCGTGGAGGCATGCAGATCTTCGTCAAGACGCTTACGGGCAAAACCATCACGCTCGAGGTCGAGTCCAGCGACACGATAGATAACGTCAAGACAAAGATCCAGGACAAGGAAGGTATTCCGCCAGACCAGCAGCGTCTCATCTTTGCTGGAAAACAGCTCGAGGACGGCCGGACGCTGTCCGATTACAACATCCAGAAGGAGAGCACGTTGCATTTGGTGCTGCGGTTGCGAGGCGGT Rhizopus_oryzae ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATCTTTGTTAAAACACTTACTGGCAAGACAATCACTTTGGAGGTCGAATCCTCTGATAGTATTGAGAATGTCAAGCAAAAAATCCAAGACAAGGAAGGTATTCCTCCTGATCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTTGAGTGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGTCTTCGTGGTGGTATGCAAATTTTTGTCAAGACTCTCACTGGTAAGACAATTACTTTGGAAGTCGAGTCTTCTGATAGCATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAAGGTATTCCTCCTGATCAACAACGTTTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGTACTTTGAGTGACTACAACATTCAAAAGGAATCCACTCTCCACTTGGTTCTCCGTCTTCGTGGTGGTATGCAAATTTTTGTCAAGACTCTCACTGGTAAGACCATCACATTGGAGGTCGAATCTTCTGATAGTATTGAGAATGTCAAGCAAAAGATTCAAGATAAGGAGGGCATTCCTCCTGATCAACAACGACTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGCACTTTAAGTGACTACAATATTCAAAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTTCGTGGTGGT Smittium_culicis_ID206W2 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAAATTTTCGTCAAAACTCTAACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCAGACACAATTGACAACGTCAAGCAGAAAATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATTTTCGCAGGTAAACAGCTCGAAGACGGCCGCACTTTGTCTGACTACAACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGCGGTATGCAAATTTTCGTAAAGACCCTTACAGGTAAGACTATCACCCTTGAAGTCGAATCTTCAGACACAATTGACAACGTCAAGCAGAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAGCAACGTCTCATTTTCGCAGGTAAACAGCTTGAAGACGGCCGCACTTTATCTGACTACAACATCCAAAAAGAATCCACTCTCCACTTGGTTCTACGTCTCAGAGGTGGTATGCAAATTTTCGTCAAAACTCTGACA------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATCCACTCTCCACTTGGTACTTCGTCTCAGAGGTGGT Smittium_mucronatum ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAGATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAGGTAGAATCTTCTGACACTATTGACAATGTCAAGCAGAAGATTCAGGATAAGGAAGGAATCCCACCAGACCAGCAGCGTCTTATTTTCGCTGGTAAACAACTTGAAGATGGCCGTACTTTATCTGATTACAACATCCAGAAGGAATCTACTCTTCACTTGGTATTGCGTCTTAGAGGTGGTATGCAAATTTTCGTTAAGACTCTAACTGGTAAGACAATTACCCTTGAAGTTGAATCTTCTGACACTATCGACAATGTCAAACAGAAGATT?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Zancudomyces_culisetae ATGCAGATTTTTGTAAAAACCTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGATACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCAACAACGTCTTATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCACTTGGTACTTCGTCTGCGTGGTGGTATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGATACCATTGAAAACGTCAAAGCCAAGATTCAGGATAAGGAAGGAATTCCACCAGACCAACAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACCCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCACTTGGTACTTCGTCTGCGTGGTGGTATGCAGATTTTCGTAAAAACTTTGACAGGCAAGACAATTACACTCGAGGTCGAGCCCTCAGATACCATTGAAAACGTCAAGGCTAAAATCCAGGACAAGGAAGGGATTCCACCAGACCAACAACGTCTCATCTTCGCAGGAAAGCAACTTGAAGATGGACGAACTCTTTCAGACTATAACATCCAGAAAGAGTCTACTCTTCACTTAGTACTTCGTCTGCGTGGTGGT???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Aedes_aegypti ATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGAGCACTCTACATCTTGTTTTGCGTCTCCGCGGAGGTATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCGGATTACAACATCCAGAAGGAGAGTACCCTTCATCTGGTTCTGCGTCTCCGTGGAGGTATGCAGATCTTTGTGAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCCGACTACAACATCCAGAAGGAGAGCACTCTACATCTTGTTTTGCGTCTCCGCGGAGGTATGCAGATCTTCGTTAAGACTCTGACTGGAAAGACCATCACCTTGGAGGTTGAGCCATCCGATACTATTGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCGCCAGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCGGACTATAACATCCAGAAGGAAAGCACTCTTCATCTGGTTCTGCGTCTCCGTGGTGGA Anopheles_gambiae ATGCAGATTTTTGTGAAAACTCTGACCGGTAAGACCATCACCCTCGAGGTCGAACCATCCGATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGAGCCATCGGATACGATTGAGAACGTTAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTCGAACCATCCGATACGATTGAGAATGTGAAGGCGAAGATCCAAGACAAGGAGGGAATCCCGCCAGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAGTCCACCCTTCATCTGGTACTCCGTCTGCGTGGTGGTATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAAGTTGAGCCATCGGATACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGAATTCCACCAGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAACATCCAGAAGGAATCCACTCTTCATCTGGTTCTCCGTCTGCGTGGTGGT Simulium_vittatum ATGCAAATCTTCGTGAAAACCCTGACGGGTAAGACCATCACCTTGGAGGTTGAGCCGTCCGACACCATCGAAAACGTAAAGGCCAAGATCCAAGATAAGGAGGGCATTCCCCCAGATCAACAACGTCTGATCTTCGCCGGCAAACAATTGGAGGACGGTCGCACTTTGTCGGACTACAACATCCAAAAGGAGTCGACTTTGCACTTAGTGTTGCGTCTGCGAGGTGGTATGCAGATTTTCGTCAAGACTTTGACGGGCAAGACCATCACGCTGGAGGTGGAGCCATCCGACACCATTGAGAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAACAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCTTGTCTGATTACAACATTCAAAAGGAATCGACACTTCATTTGGTTTTGCGTCTGCGTGGCGGTATGCAAATCTTCGTCAAGACACTGACGGGAAAAACCATCACATTGGAGGTCGAACCTTCGGACACGATTGAGAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAACAGCGTCTGATCTTCGCCGGCAAACAGTTGGAGGATGGCCGTACGTTGTCAGATTATAACATCCAAAAGGAGTCTACGCTTCACTTGGTGCTCCGTCTGCGTGGTGGTATGCAAATTTTCGTCAAGACATTGACTGGAAAGACCATCACCTTGGAGGTCGAGCCCTCGGACACAATCGAAAACGTAAAGGCTAAAATCCAGGACAAAGAAGGCATTCCTCCAGATCAACAGCGTCTGATCTTCGCTGGCAAACAACTCGAAGATGGCCGCACCTTGTCTGACTACAACATTCAGAAGGAGTCGACCTTGCATTTGGTCTTGCGTCTGCGTGGCGGT Culex_quinquefasciatus ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCTGATACCATTGAAAACGTTAAAGCCAAGATTCAGGATAAGGAGGGAATCCCTCCAGATCAACAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAACATCCAGAAGGAGAGCACACTGCATTTGGTACTGCGTCTGCGCGGTGGTATGCAGATATTCGTCAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCCTCGGATACCATCGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCTCCAGATCAACAGCGTTTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCTACACTACATCTGGTCCTGCGTCTGCGCGGAGGTATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACCCTGGAGGTCGAGCCCTCGGATACCATCGAGAACGTTAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCAGATCAACAGCGTCTGATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCTGCGTCTGCGCGGAGGTATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTCGAACCCTCGGATACCATTGAAAACGTTAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAACAGCGTCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACCTTATCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTGGTCCTGCGTCTGCGCGGAGGT Arabidopsis_lyrata ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATGCAGATCTTCGTTAAAACTCTCACCGGAAAGACTATCACCCTTGAGGTGGAAAGCTCTGACACCATCGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAGCAGAGGCTTATTTTCGCCGGAAAGCAGTTGGAGGATGGCCGTACGTTGGCTGATTACAACATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGGTATGCAGATTTTCGTCAAGACCCTAACGGGAAAGACGATTACTCTTGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAGGATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTCCGTGGAGGTATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACCCTTGAAGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTATCCCTTTGGACCAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGATTACAACATCCAGAAAGAGTCTACTCTTCACTTGGTCCTCCGTCTCCGTGGTGGT ; END; BEGIN TREES; Title 'Bayesian_Tree_PolyUBQ_NT.tre'; LINK Taxa = Taxa; TRANSLATE 1 Homo_sapiens, 2 Danio_rerio, 3 Bos_taurus, 4 Canis_lupus_familiaris, 5 Amanita_thiersii, 6 Armillaria_mellea, 7 Piloderma_croceum, 8 Mucor_circinelloides, 9 Umbelopsis_ramanniana, 10 Penicillium_expansum, 11 Lichtheimia_hyalospora, 12 Hesseltinella_vesiculosa, 13 Aspergillus_clavatus, 14 Backusella_circina, 15 Smittium_culicis_GSMNP, 16 Arthroderma_benhamiae, 17 Rhizopus_oryzae, 18 Smittium_culicis_ID206W2, 19 Smittium_mucronatum, 20 Zancudomyces_culisetae, 21 Aedes_aegypti, 22 Anopheles_gambiae, 23 Simulium_vittatum, 24 Culex_quinquefasciatus, 25 Arabidopsis_lyrata; TREE con_50_majrule = (25:0.2777540185503147,(5:0.524698391472781,(6:0.3244771150831443,7:0.3885197634508158):0.1518080438720864,((2:0.131896333020461,(1:0.1072619560795927,(3:0.06091008475947582,4:0.09775363542981717):0.09221248143687834):0.2447738319823798):0.3854305333609985,(23:0.3662800808292257,((20:0.3933051581025402,22:0.1371192604985088):0.09280756752448586,(21:0.2721465504170136,24:0.1458347748512225):0.08850601824392028):0.08162404819481758):0.03996071805475421):0.1840913906785202,((10:0.2240849952653146,(13:0.2332801661314843,16:0.5196828937623874):0.1285600153248718):0.08101955130077762,(9:0.1104163919654112,(15:0.03133523528933675,(18:0.1169882053953781,19:0.1455242000719983):0.02673985470672842):0.1579733368145729,(12:0.1530025726384182,(14:0.1938641221752361,(11:0.2579363793316704,(8:0.109710055212335,17:0.2636246208794726):0.03812972252461631):0.04560126516381241):0.04544265488074871):0.05221023910814679):0.2864823010076546):0.07009191521718236):0.2777540185503147); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 912; EXSET * UNTITLED = ; END; BEGIN CODONS; CODONPOSSET * UNTITLED = N: 4- 228 232- 456 460- 684 688- 912 , 1: 1 229 457 685, 2: 2 230 458 686, 3: 3 231 459 687; CODESET * UNTITLED = universal: 1 - 912; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 912; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1463241611826; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4839765216885231472; tell It; setDefaultOrder 10 8 3 8 0 1 3 16 15 28 17 19 27 20 14 29 18 21 13 6 24 25 23 22 30; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8879663041760072175; mqVersion 275; checksumv 0 3 1506745765 null getNumChars 912 numChars 912 getNumTaxa 25 numTaxa 25 short true bits 15 states 15 sumSquaresStatesOnly 401772.0 sumSquares 401772.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 623; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1788 545; setLocation 132 208; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4839765216885231472 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4839765216885231472; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1165 478; setLocation 132 208; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8879663041760072175 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 215; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1165 478; setLocation 132 208; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.ColorByExcluded.ColorByExcluded; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight on; toggleThinRows on; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;