#NEXUS [written Wed May 18 14:50:41 BRT 2016 by Mesquite version 3.04 (build 725) at JulioPolonio-PC/192.168.56.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=14; TAXLABELS Diaporthe_citri_CBS199_39 Diaporthe_citri_CBS230_52 Diaporthe_citri_G01 Diaporthe_citri_LGMF946 Diaporthe_endophytica_CBS133811 Diaporthe_endophytica_LGMF919 Diaporthe_endophytica_LGMF934 Diaporthe_endophytica_LGMF935 Diaporthe_melonis_CBS435_87 Diaporthe_melonis_CBS507_78 Diaporthe_phaseolorum_CBS113425 Diaporthe_phaseolorum_CBS116019 Diaporthe_phaseolorum_LGMF941 Diaporthella_corylina_CBS121124 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1831; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Diaporthe_citri_CBS199_39 ?????????????????????????????????????????????????????????????????CCTCGGCGCAGGCCGGCCTTTTGTGACAAAGGCCCCCTGGAGACAGGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGT-AAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCCTGTT----ACAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTTTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAATATCACAACATGCGCAGTTTGTCCACCATATTCCTCCATGTGCTCACGAAAC-------------------------------TCGTCGGCGCA-CCCCGTCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCCCCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-CTCACACCAAAACCCTGTCGCACCTTACCACTCCT-TGCCAGTCATGCACAAAGACCATCACTTCCACTCCCA--TTCATTGCTACGAGGAGCTTTTTGAATCGCTTGAA------------------------------------ACTCATGCTGACTT--TTCCTACACAGCCGCTGAGCTGGGTAAGGGTT?????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCACGGTCGGGCCTCAAAACACAACCAGCTCCCTTCGAAGAGCACCCAGATGCCCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTCCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTACCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACTGCCGCGACCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGGTTCTCTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGTACC--------TCCTATTCCCTGCC----GAC-GCCCTCGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTAAGTCAATAGCCACGTTGCCAATTCAGATTTGAGCCTCTCGGCATGG-TTGACTGCCGCCGC-CAAGCCCTAGCTAACGCG-----TATTCGCCCAGGCCTCCGGCAACAAGTATGTCCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_citri_CBS230_52 ?????????????????????????????????????????????????????????????????CCTCGGCGCAGGCCGGCCTTTTGTGACAAAGGCCCCCTGGAGACAGGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGT-AAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCCTGTT----ACAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTTTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAATATCACAACATGCGCAGTTTGTCCACCATATTCCTCCATGTGCTCACGAAAC-------------------------------TCGTCGGCGCA-CCCCGTCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCCCCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-CTCACACCAAAACCCTGTCGCACCTTACCACTCCT-TGCCAGTCATGCACAAAGACCATCACTTCCACTCCCA--TTCATTGCTACGAGGAGCTTTTTGAATCGCTTGAA------------------------------------ACTCATGCTGACTT--TTCCTACACAGCCGCTGAGCTGGGTAAGGGTT?????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCACGGTCGGGCCTCAAAACACAACCAGCTCCCTTCGAAGAGCACCCAGATGCCCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTCCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTACCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACTGCCGCGACCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGGTTCTCTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGTACC--------TCCTATTCCCTGCC----GACCGCCCTCGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTAAGTCAATAGCCACGTTGCCAATTCAGATTTGAGCCTCTCGGCATGG-TTGACTGCCGCCGC-CAAGCCCTAGCTAACGCG-----TATTCGCCCAGGCCTCCGGCAACAAGTATGTCCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_citri_G01 GATATCATACTCGGAGGAGTCTCCTCGTGGACCTTCCGGCGTGTTACTTATACGGAGAAGTACCTCGGCGGCAGCGCCCCGCTTTTG-TGACAAAGGCCCCGTGGAGACAGGGAGCAGCCCGCCGGC-GCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGT-AAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTT-GTGATGGGGCACTGCCTGTT----ACAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGA-CCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCT---GCGTCCCTGCCGTTAACCCC------ACTCTGAAATTGACCTCGGATCAGTAGATACCGCTGACTAGCATATCATAGCGGAGACATCGAGAAGTTCGAGAAGGAAGGTTAGTAAATATCACAACATGCGCAGTTTGTCCACCATATTCCTCCATGTGCTCACGAAAC-------------------------------TCGTCGGCGCA-CCCCGTCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCCCCCCTCCCTCTGGATTTTCCATTTTAAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTAT---CTCACACCAAAACCCTGTCGCACCTTACCACTCCT-TGCCAGTGATGCACAAAGACCATCACTTCCACTCCCA--TTCATTGCTACGAGGAGCTTTTTGAATCGCTTGAA------------------------------------ACTCATGCTGACTT--TTCCTACACAGCCGCTGAGCTGGGTAAGGGTTCCTTTCAAGTAGA--------------------------------------------------------------CAACCCCACC?TCACCACAACACCCAGGG?GGG?CCT?AAAACACCACCGGCCCCTTTCGAAGAGCACCCAGATGCCCTTGAAACACGGG?C-AAATTGCAAAAATGAC-CTTTTCCCCCCCCACGGGTTCCCCTTCAGACCGGC?AATG?GAAA?TTACCCCCGG?AAAC--------CCCGCCAGACTTTATCGCCCCCGG?AG?TGA------------------?A?GTTTCCCGGGGATAACCAAATCGGGGCTGTTTTCGGGGGGCGTCGCAGCTCTCCCAGCTCC---------AAGCCTACGGCCGCGACCCTCGACGCGCGACAAGGCGGAGCCCAA-----------AGCATCGATACTGACCTCGGTTCTCTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAAGGGCGGGTATGTACC--------TCCTATTC?CCGGC---GGAGGGCCCTCGT--CCCCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTAAGTCGATAC?CACGTTG?CAATTCAGATTTCG-CCTCTCGGCATGG-TTGAC?GCCGCCGC-CAAGCCCTAGCTAACGCG-----TATTCGCCCAGGCCTCCGGCAACAAGTATGT?CCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTCCGTGCCGGT?CCTTCGGCCAGCTCTTCCGCCCCGACAACT Diaporthe_citri_LGMF946 ????????????????????????????????????????????????????????????????CCTCGGGCGCAGGCCGGCCTTTTGTGACAAAGGCCCCCTGGAGACAGGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCCTGTT----ACAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTTTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA????????????????????????????TAAATATCACAACATGCGCAGTTTGTCCACCATATTCCTCCATGTGCTCACGAAAC-------------------------------TCGTCGGCGCACCCCCGTCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCCCCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTAT---CTCACACCAAAACCCTGTCGCACCTTACCACTCCT-TGCCAGTGATGCACAAAGACCATCACTTCCACTCCCA--TTCATTGCTACGAGGAGCCTTTTGAATCGCTTGAA------------------------------------ACTCATGCTGACTT--TTCCTACACAGCCGCTG????????????????????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCACGGTCGGGCCTCAAAACACCACCAGCTCCCTTCGAAGAGCACCCAGATGCCCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTCCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTACCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACTGCCGCGACCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGGTTCTCTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGTACC--------TCCTATTCCCTGCC----GACGGCCCTCGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTAAGTCGATAGCCACGTTGCCAATTCAGATTTGAGCCTCTCGGCATGG-TTGACTGCCGCCGC-CAAGCCCTAGCTAACGCG-----TATTCGCCCAGGCCTCCGGCAACAAGTATGTCCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_endophytica_CBS133811 ??????????????????????????????????????????????????????????????????????????????????????????????AGGCCCCCTGGAAACAGGGAGCAGCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCCTGTA----AAAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCACATCACCCCATACGCCC--AGAAC-------------------------------TCGTTGGCGCG-CGCTGTCTACGAGGCTTCGTCACACCTCTCAAGGCATTTTCACCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-TTCACACCAAAACCCTGTCGCACCTTACCTCTCTTTCACCAGTGACGCACCAACAGCATCACCTTCATTCCCA--TCTTTTGTTTGAGGGAGCTTTTCAACTCGCTCGAA------------------------------------AATGATGCTGACTC--TTTCTGAACAGCCGCCGAGCTGGGTAAGGGTT?????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCATGGTCGGGCCTCAAAATACCACCAGCGCCCTGCGAAGAGCACCCAGATGCTCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCCTCCTGTCAAC--------ACCGCCAGGGCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAACCTACCACCGCGGCCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGTTTCTCTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGCACC--------TCCTATTCCCTGCCCACTGACTGCCCTGGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAACGGCCACGTCGTCAATTCAAATTTGAAGCTCTCGGCATGG-TCAACTGCCGCCGC-CAAGCCCTTGCTAACGCG-----TTTTCCCCCAGGCTTCCGGCAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_endophytica_LGMF919 ??????????????????????????????????????????????????????????????????????????????????????????????AGGCCCCCTGGAAACAGGGAGCAGCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCCTGTA----AAAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCTAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGT-AACATCGCCCAACGGGCACCTTGACCTCCACATCACCCCATACGCCC--AGAAC-------------------------------TCGTTGGCGCG-CGCTGTCTACGAGGCTTCGTCACACCTCTCAAGGCATTTTCACCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-TTCACACCAAAACCCTGTCGCACCTTACCTCTCTTTCACCAGTGACGCACCAACAGCATCACCTTCATTCCCA--TCTTTTGTTTGAGGGAGCTTTTCAACTCGCTCGAA------------------------------------AATGATGCTGACTC--TTTCTGAACAGCCGCCGAGCTGGGTAAGGGTT?????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCATGGTCGGGCCTCAAAACACCACCAGCGCCCTGCGAAGAGCACCCAGATGCTACTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACCACCGCGGCCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGGTTCCTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGCACC--------TCCTATTCCCTGCCCACTGACTGCCCTGGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCTGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAACGGCCACGTCGTCAATTCAAATTTGACCCTCTCGGCGTGGATCAACCGCCGCCGC-CAAGCCCTTGCTAACGCG-----TTTTACCCCAGGCTTCCGGCAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_endophytica_LGMF934 ?????????????????????????????????????????????????????????????????CCTCGGCGCAGGCCGGCTTTTTCT---AAAAGCCCCCTGGAAACAGGGAGAAGCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCCTGTA----AAAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCACATCACCCCATACGCCC--AGAAC-------------------------------TCGTTGGCGCG-CGCTGTCTACGAGGCTTCGTCACACCTCTCAAGGCATTTTCACCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-TTCACACCAAAACCCTGTCGCACCTTACCTCTCTTTCACCAGTGACGCACCAACAGCATCACCTTCATTCCCA--TCTTTTGTTTGAGGGAGCTTTTCAACTCGCTCGAA------------------------------------AATGATGCTGACTC--TTTCTGAACAGCCGCCGAGCTGGGTAAGGGT??????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCATGGTCGGGCCTCAAAACACCACCAGCGCCCTGCGAAGAGCACACAGATGCTACTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACCACCGCGGCCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGGTTCTTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGCACC--------TCCTATTCCCTGCCCACTGACTGCCCTGGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAACGGCCACGTCGTCAATTCAAATTTGACCCTCTCGGCATGGATCAACTGCCGCCGC-CAAGCCCTTGCTAACGCG-----TTTTCTCACAGGCTTCCGGCAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_endophytica_LGMF935 ??????????????????????????????????????????????????????????????????????????????????????????????AGGCCCCCTGGAAACAGGGAGCAGCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCCTGTG----AAAGGGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCTGGTGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAACATCGCCCAACGGGCACATTGACCTCCACATCACCCCATACGCCC--AGAAC-------------------------------TCGTTGGCGCG-CGCTGTCTACGAGGCTTCGTCACACCTCTCAAGGCATTTTCACCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-TTCACACCAAAACCCTGTCGCACCTTACCTCTCTTTCACCAGTGACGCACCAACAGCATCACCTTCATTCCCA--TCTTTTGTTTGAGGGAGCTTTTCAACTCGCTCGAA------------------------------------AATGATGCTGACTC--TTTCTGAACAGCCGCCGAGCTGGGTAAGGGTT?????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCATGGTCGGGCCTCAAAACACCACCAGCGCCCTGCGAAGAGCACCCAGATGCTCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACCACCGCGACCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGTTTCTTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGCACC--------TCCTATTCCCTGCCCACTGACTGCCCTGGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAACGGCCACGTCGTCAATTCAAATCTGACCCTCTCGGCATGGATCAACCGCCGCCGC-CAAGCCCTTGCTAACGCG-----TTTTCTCCCAGGCTTCCGGTAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_melonis_CBS435_87 ?????????????????????????????????????????????????????????????????CCTCGGCGCAGGCCGGCCTTTGTCAGAGAAGGCCCCCTGGGAACAGGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGT-AAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGTTGGGGCACTGCTCCCT--CGCGGGAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAACATCACCAAACCCGTAACTTGACCTCCATGTTCCTCCATATGCACATAGAAA-------------------------------TCGTTGGCGCG-CGCTGTCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCACCCCTCCCTCCGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGACCGCTTATCTCCTCGCATCAAAACCCTGCCGCACCT-AGCACTCTT-CACCTGTGACGCACCAATAGCATCGTTTTTATTCCCAATTTTATTGCACGAAGGAGCTGCTCGAATCGCTTGGA------------------------------------AGTCATGCTGACTC--TTTCTGTACAGCCGCCGAGCTGGGCAAGGGTTCCTTCAAG-TA??????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCACGGTCGGGCATCAAAATACCACCAGCGCCCTGCAATGAGCACCAAGATGCCCTTGGAACACGCGTC-AGATTGCTAACATTAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCTCCTTGTCAAC--------ACCGCCAGACCCTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCCCT-CCAGCTCC---------GAGCCTACCACCGCGACACTCGACGCGCGACAAGGC-GAGCTCGA-----------AACAGCGATACTGACCTCGATTCTTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGGACC--------TCCTATTCCCTGGCTATCGA----CCTCGT--CCTCTCCTCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTGAGTCAATAGCCACGTCGCCAATTCAGACTTGACCGTCTTGGCATGG-TAAACTGCCGCCGC-CAAGCCCTTGCTAACGCG-----TATTCGCCCAGGCCTCCGGCAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_melonis_CBS507_78 ?????????????????????????????????????????????????????????????????CCTCGGCGCAGGCCGGCCTTTGTCAAAGAAGGCCCCCTGGAGACAGGGAGCAGCCCGCCGGCGGCCAACTAAACTCTTGTTTCTATAGTGAATCTCTGAGT-AAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCTCTCT--CGCGGGAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTACATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAACATCACCAAACCCGCAGTTTGACCTCCATGTCCCTCCATACGCACATAGAAA-------------------------------TCGTTGGCGCG-CGCTGCCTGCGGGGCTTCGTCACACCTGTCCAGGCATTTTCACCCCTCCCTCCGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGTGCTTATCAGACCGCTTATCTCCTCGCACCAAAACCCTGCCGCACCT-AGCACACTT-CACCTGTGACGCACCAATAGCATCGTTTTTATTCCCA--ATTGTTGCGCGAAGGAGCTACTCGAATCGCTTGAA------------------------------------AGTCATGCTGACTC--TTTCTGTACAGCCGCCGAGCTGGGTAAGGGTT?????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCACGGTCGGGCCTCAAAACACCACCAGCGCCCTGCAAAGAGCTCCAAGATGCCCTTGGAATACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCTCCTTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------GAGCCTACCACCGCGACACTCGACGCGCGACAAGGC-GAGCTCGA-----------AACAGCCATACTGACCTCGATTCTTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGGACC--------TCCTATTCCCTGACTACCG-------------CCTCTCCTCTGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTAAGTCAATAGCCACGTCGCCAATTCAGACTTGACCGTCTCGGCATGG-TGAACTGCCGCCGC-CAAGCCCTTGCTAACGCG-----TTTTCCTTTAGGCCTCCGGCAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_phaseolorum_CBS113425 ??????????????????????????????????????????????????????????????????????????????????????????????AGGCCCCCTGGAAACAGGGAGCAGCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCTTTCG-TCCAGAAAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTCCACATCACCCCATACGCAC--AGAAC-------------------------------TCGTTGGCGCG-CGCTGCCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCACCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-CTCACACCAAAACCCTGTCGCACCTTACCTCTCTTCCACCAGTGACGCACCAACAGTATCACCTTCATTCCCA--TCTGTTGCTCGTGGGAGCTTTTCGACTTGCTTGAA------------------------------------AATGATGCTGACTC--TTTCTGAACAGCCGCCGAGCTGGGTAAGGGTT?????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCATGGTCGGGCCTCAAAACACCACCAGCGCCCTGTGAAGAGCACCCAGATGCTCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACCACCGCGACCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGTTTCTTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGCACC--------TCCTATTCCCTGCCCACTGACTGCCCTGGT--CCTCCCCGCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAACGGCCACGTCGTCAATTCAAATTTGACCCTCTCGGCATGGATCAACCGCCGCCGC-CAAGCCCTTGCTAACGCG-----TTTTCCCCCAGGCTTCCGGCAACAAGTATGTGCCCCGTGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_phaseolorum_CBS116019 ??????????????????????????????????????????????????????????????????????????????????????????????AGGCCCCCTGGAAACAGGGAGCAGCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCTTTCG-TCCAGAAAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????GAGAAGGAAGGTTAGTAAACATCGCCCAACGGGCACCTTGACCTACACATCACCCCATACGCAC--AGAAC-------------------------------TCGTTGGCGCG-CGCTGCCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCACCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTATCT-CTCACACCAAAACCCTGTCGCACCTTACCTCTCTTCCACCAGTGACGCACCAACAGTATCACCTTCATTCCCA--TCTGTTGCTCGTGGGAGCTTTTCGACTTGCTTGAA------------------------------------AATGATGCTGACTC--TTTCTGAACAGCCGCCGAGCTGGGCAAGGGTTCCTTCAAG-TA??????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCATGGTCGGGCCTCAAAACACCACCAGCGCCCTGTGAAGAGCACCCAGATGCTCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACCACCGCGACCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGTTTCTTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGCACC--------TCCTATTCCCTGCCCACTGACTGCCCTGGT--CCTCCCCGCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAACGGCCACGTCGTCAATTCAAATTTGACCCTCTCGGCATGGATCAACCGCCGCCGC-CAAGCCCTTGCTAACGCG-----TTTTCCCCCAGGCTTCCGGCAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthe_phaseolorum_LGMF941 ??????????????????????????????????????????????????????????????????????????????????????????????AGGCCCCCTGGAAACAGGGAGCAGCCCGCCGGCGGCCAACCAAACTCTTGTTTCTACAGTGAATCTCTGAGTAAAAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC---TGGCTTGGTGATGGGGCACTGCTTTCG-TCCTGAAAGCAGGCCCTGAAATCTAGTGGCGAGCTCGCCAGGACCCCGAGCGTAGTAGTTATATCTCGCTCTGGAAGGCCCTGGCGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAATTTGACCTCGGATCAGGTAGGAATACCCGCTGA-----ACTTAAGCATA?????????????????????????????????????????????????????????????????????????????????AAC-------------------------------TCGTTGGCGCG-CGCTGCCTGCGAGGCTTCGTCACACCTGTCAAGGCATTTTCACCCCTCCCTCTGGATTTTCCATTTTCAGTGCGGGTGCGGGGTGCGCTTATCAGGCCGCTTAT---CTCACACCAAAACCCTGTCGCACCTTACCTCTCTTCCACCAGTGACGCACCAACAGCATCACCTTCATTCCCA--TCTGTTGCTCGGGGGGGCTTTTCGACTCGCTTGAA------------------------------------AATGATGCTGACTC--TTTGTGAACAGCCGCCGAGCTGGGTAAGGG???????????????????????????????????????????????????????????????????????????????ACCCCACCATCGCGACCACACCCATGGTCGGGCCTCAAAACACCACCAGCGCCCTGTGAAGAGCACCCAGATGCTCTTGGAACACGCGTC-AGATTGCTAACATGAC-CTTTTTCTCGCCCACAGGTTCACCTTCAGACCGGCCAATGCGTAAGTTGCCTCCTGTCAAC--------ACCGCCAGACCTTATCGCCACCCGTAGCTGA------------------CACGTTTCCCAGGG-TAACCAAATCGGTGCTGCTTTC-TGGTGCGTCGCAGCTCT-CCAGCTCC---------AAGCCTACCACCGCGACCCTCGACGCGCGACAAGGC-GAGCTCGA-----------AGCATCGATACTGACCTCGTTTCTTTAGGCAAACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGCGTGTATGCACC--------TCCTATTCCCTGCCCACTGACTGCCCTGGT--CCTCCCCGCCGGCTTGGCACTGATGATCGCACAGTTACAACGGCACTTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAACGGCCACGTCGTCAATTCAAATTTGACCCTCTCGGCATGGATCAACCGCCGCCGC-CAAGCCCTTGCTAACACG-----TTTTCCCCCAGGCTTCCGGCAACAAGTATGTGCCCCGCGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGACGCCGTC???????????????????????????????????????? Diaporthella_corylina_CBS121124 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AAAAAAACAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCTGGTATTCCGGCGGGCATGCCTGTTCGAGCGTCATTTTACCCCTCAAGTTATACGACTTGGTGTTGGGGCATTACCTTCCGCGAGGAGGGTAAGCCCTGAAATAGACTGGCGGGCTCACTAACACTCCGAGCGTAGTAGT??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAGAAGGAGGGTATGTACCACACTCTGTATCCCCA---TTATCCACATCACCATCGACACGATCACGCAAACACTCGAGCTCGATCGACCGTGATGCCCTGGTCGTGGCCATC-CTCTGCCTTGCCCACCT-GTCCCACCCGTTCTACGTTTTTCGCCCTCCCACCGCACATTTTTGCTTTG-----TGGTGCGGGGTTTGCGTCTCGGTC---TTAT---CTCAGAT---AAACGTGACCCACCCGACCGCCACCTCAGCACGCCAGCACCAGCACCGGCACCAGCACCGGCA--CCGGCACCAGCAAACCTCCCTGCCAACCCATCACATGTCCCCTGCCTCGTACCCCTTACGTTGGCGACATCAACCATGCTAATTCGTTTTCTCTACAGCTGCTGAGCTCGGTAAGGGTT???????????CGTCGGCAGATGCCAGCGCCGTACTCTTCCTTTTCGCATTGTGTGCCCCTGAGCCTCGAACCCCCCACCCCACTATCGCGACGACCGCC----------CTCCCTCCCTCGCCCATGAACCCTCACGACACACAGGAAGCCCTCCAGGAACGCGTCTCGGTTGCTAATCTGATGTTTTCTCCCGCGTATAGGTTCACCTCCAGACCGGCCAGTGCGTAAGTTGCTCCCCCTCCCCCGCTGTCAACACCCCGCCGCCATTGCCGCGGCTGCCTGGAGGAGATAACGAACTGACCACGTCTCGCAGGG-TAACCAAATTGGTGCTGCCTTC-TGGTGCGT---ACCTCT-CTAGCTCCGGCGGCGCGAGCTCTACGGATCTGCGCCTGCGGACGCGACACGGC-GACCTCGATGTCCCCTCGTGGCATTGATACTGACCTCGA--CCGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACAGCAATGGCGTGTATGTACCATGCCCATGCCCATATCCACCCTCCCGCCCACGACGACCACGCCTCCCGCTCCGAGATGCTGACCACCGCGTAGCTACAACGGCACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTCAATCGAGACGCACCCGTGGCATCGTGGATGCTGCTGGGCACT-GCTCCCGCCGTCGCGCCTGCTCCGACTGACGCGCTTCTTCTTTTTTCAGGCCTCCGGCAACAAGTATGTCCCCCGCGCCGTCCTCGTCGACCTCGAGCCCGGTACCATGGATGCCGTC???????????????????????????????????????? ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1831; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1831; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1831; END; BEGIN TREES; Title 'Trees from "Dcitri.nex.con.tre"'; LINK Taxa = Taxa; TRANSLATE [0] 1 Diaporthe_citri_CBS199_39, [1] 2 Diaporthe_citri_CBS230_52, [2] 3 Diaporthe_citri_G01, [3] 4 Diaporthe_citri_LGMF946, [4] 5 Diaporthe_endophytica_CBS133811, [5] 6 Diaporthe_endophytica_LGMF919, [6] 7 Diaporthe_endophytica_LGMF934, [7] 8 Diaporthe_endophytica_LGMF935, [8] 9 Diaporthe_melonis_CBS435_87, [9] 10 Diaporthe_melonis_CBS507_78, [10] 11 Diaporthe_phaseolorum_CBS113425, [11] 12 Diaporthe_phaseolorum_CBS116019, [12] 13 Diaporthe_phaseolorum_LGMF941, [13] 14 Diaporthella_corylina_CBS121124; TREE con_50_majrule = (14:0.535653,((1:0.000509579,2:0.0006698838):0.001861599,(3:0.06813151,4:0.002483674):0.002296821):0.03645307,((((5:0.00567533,(6:0.004442468,7:0.004308159):0.00271854):0.001962746,8:0.004137189):0.01031018,((11:0.001247549,12:0.002029705):0.002448425,13:0.004238876):0.005949578):0.02409248,(9:0.01796758,10:0.01225368):0.03279895):0.01518768); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1463593841787; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6829492363412240772; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6993653207817656784; mqVersion 304; checksumv 0 3 801597978 null getNumChars 1831 numChars 1831 getNumTaxa 14 numTaxa 14 short true bits 15 states 15 sumSquaresStatesOnly 400572.0 sumSquares 400572.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6993653207817656784 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 198; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -72; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;