#NEXUS [ Title AllineamJ2.txt] begin taxa; dimensions ntax= 24; taxlabels TRGJ6_2_F_Oviari TRGJ3_2_P_Oviari TRGJ4_2_F_Oviari TRGJ1_2_F_Oviari TRGJ2_2_F_Oviari TRGJ5_3_F_Oviari TRGJ3_F_Turtru TRGJ1_F_Homsap TRGJ2_F_Homsap TRGJ2_2_F_Camdro TRGJ2_F_Turtru TRGJ5_2_P_Oviari TRGJP_F_Homsap TRGJ2_1_ORF_Camdro TRGJP2_F_Homsap TRGJP1_F_Homsap TRGJ1_1_F_Oviari TRGJ2_1_F_Oviari TRGJ4_1_P_Oviari TRGJ5_1_F_Oviari TRGJ1_1_F_Camdro TRGJ3_1_F_Oviari TRGJ6_1_F_Oviari TRGJ1_F_Turtru ; end; begin characters; dimensions nchar= 72; format missing=? gap=- matchchar=. datatype=nucleotide; matrix [!Domain=Data property=Coding CodonStart=1;] TRGJ6_2_F_Oviari ------------GAATTTAAACTACATGATCTTTGGTGGAGGAACAAAAGTTTTCGT-----------CCAA TRGJ3_2_P_Oviari ------------A....ATT.TAGA.AA..G....T.AAT....T....T..-.T..----------CAT.G TRGJ4_2_F_Oviari ------------T...AGTT..ATA.AA.A...CAAC.TT.........C..G....----------CA..G TRGJ1_2_F_Oviari ------------....GATT..ATA.AA.A...CAA..TT..GG.....C.CA.T..----------CA..G TRGJ2_2_F_Oviari ------------....AATT..ATA.AA.A...CAA..TT...G.....C.CA.T..----------CA..G TRGJ5_3_F_Oviari ------------..G..ATT.TGTA.AA.....C..C.AT..G......C..G.A..----------CA..G TRGJ3_F_Turtru ------------..G..ATT..ATA.AA..T..C..C.AT..G......C..G.G..----------CA..G TRGJ1_F_Homsap ------------.....ATT.TA.G.AAC.......CA.T.......C.C.GG.T..----------CA..G TRGJ2_F_Homsap ------------.....ATT.TA.G.AAC.......CA.T.......C.C..G.T..----------CA..G TRGJ2_2_F_Camdro ------------.....A-T.TA.T.AA.....C.....T.........C.CG.A..----------CA..G TRGJ2_F_Turtru --GGCTAACACATGGCAAG.G.GT..AAG.G......TCT......C.GC.CA.T..----------TA..G TRGJ5_2_P_Oviari --TGCAAACAGGTGGCCAG.G.AT.GAAG.G......TCCA.....C..C..A.T..----------TA..G TRGJP_F_Homsap TGGGCAAGAGTT.GGCAA...AAT..A.G.A......CCC........GC..A..A.----------TA..G TRGJ2_1_ORF_Camdro -GGGCTGCAAAA.GGGC--TGGAGG.A...A.....A.A...G..TG.GC.CA.A..GACCGACCGCC..TG TRGJP2_F_Homsap ------ATAGTA.TGA.--TGGAT..A..CG....CAAA...G..T.GGC.CA.A..----AACTTCG..TG TRGJP1_F_Homsap ------ATACCACTGG.--TGG.T..A...A....C..A...G..T..GC.CA.A..----AACTTCA..TG TRGJ1_1_F_Oviari ------ACAGCGAGGGC--TGGA.G.A...A.....A.A....G.T..CA.CA.AA.----AACTCCT..CG TRGJ2_1_F_Oviari ------ACAGCTCGGGC--TGGA.G.A...A.....A.A....G.T..CA.CA.A..----AACTCCT..CG TRGJ4_1_P_Oviari ------ATGGCTC.GAA--TGAA.G.A...A.....AAA....C.T..GC.CA.AA.----AGCTCCC.ATG TRGJ5_1_F_Oviari -----AATCATT.TGACA.GGGAT..A.G.A.......A......T..GC.CG.A..--------------. TRGJ1_1_F_Camdro ------ATAGCTCGGGC--TGGAGG.A..CA.....AAA...G..TG.GC.CA.A..----AGTTCCC.TTG TRGJ3_1_F_Oviari ------ACAGTTC.GGC--TGGA.G.A...A.....AAA..C...TG.GC.CA.A..----AGCTTCC..TG TRGJ6_1_F_Oviari ------ACAGCTC.GG.--TGG---.A...G.....A.A......T..GC.CA.A..----AGCTCCCTGTG TRGJ1_F_Turtru ------ATAGGTC.GG.--TGGAT..A...A.....A........T..GC.CA.A..----AACTCTC..TG ; end;