#NEXUS
[ Title AllineamJ2.txt]
begin taxa;
   dimensions ntax= 24;
   taxlabels
      TRGJ6_2_F_Oviari  
      TRGJ3_2_P_Oviari  
      TRGJ4_2_F_Oviari  
      TRGJ1_2_F_Oviari  
      TRGJ2_2_F_Oviari  
      TRGJ5_3_F_Oviari  
      TRGJ3_F_Turtru    
      TRGJ1_F_Homsap    
      TRGJ2_F_Homsap    
      TRGJ2_2_F_Camdro  
      TRGJ2_F_Turtru    
      TRGJ5_2_P_Oviari  
      TRGJP_F_Homsap    
      TRGJ2_1_ORF_Camdro
      TRGJP2_F_Homsap   
      TRGJP1_F_Homsap   
      TRGJ1_1_F_Oviari  
      TRGJ2_1_F_Oviari  
      TRGJ4_1_P_Oviari  
      TRGJ5_1_F_Oviari  
      TRGJ1_1_F_Camdro  
      TRGJ3_1_F_Oviari  
      TRGJ6_1_F_Oviari  
      TRGJ1_F_Turtru    
;
end;
begin characters;
   dimensions nchar= 72;
   format missing=? gap=- matchchar=. datatype=nucleotide;
   matrix

[!Domain=Data property=Coding CodonStart=1;]
TRGJ6_2_F_Oviari  
------------GAATTTAAACTACATGATCTTTGGTGGAGGAACAAAAGTTTTCGT-----------CCAA
TRGJ3_2_P_Oviari  
------------A....ATT.TAGA.AA..G....T.AAT....T....T..-.T..----------CAT.G
TRGJ4_2_F_Oviari  
------------T...AGTT..ATA.AA.A...CAAC.TT.........C..G....----------CA..G
TRGJ1_2_F_Oviari  
------------....GATT..ATA.AA.A...CAA..TT..GG.....C.CA.T..----------CA..G
TRGJ2_2_F_Oviari  
------------....AATT..ATA.AA.A...CAA..TT...G.....C.CA.T..----------CA..G
TRGJ5_3_F_Oviari  
------------..G..ATT.TGTA.AA.....C..C.AT..G......C..G.A..----------CA..G
TRGJ3_F_Turtru    
------------..G..ATT..ATA.AA..T..C..C.AT..G......C..G.G..----------CA..G
TRGJ1_F_Homsap    
------------.....ATT.TA.G.AAC.......CA.T.......C.C.GG.T..----------CA..G
TRGJ2_F_Homsap    
------------.....ATT.TA.G.AAC.......CA.T.......C.C..G.T..----------CA..G
TRGJ2_2_F_Camdro  
------------.....A-T.TA.T.AA.....C.....T.........C.CG.A..----------CA..G
TRGJ2_F_Turtru    
--GGCTAACACATGGCAAG.G.GT..AAG.G......TCT......C.GC.CA.T..----------TA..G
TRGJ5_2_P_Oviari  
--TGCAAACAGGTGGCCAG.G.AT.GAAG.G......TCCA.....C..C..A.T..----------TA..G
TRGJP_F_Homsap    
TGGGCAAGAGTT.GGCAA...AAT..A.G.A......CCC........GC..A..A.----------TA..G
TRGJ2_1_ORF_Camdro
-GGGCTGCAAAA.GGGC--TGGAGG.A...A.....A.A...G..TG.GC.CA.A..GACCGACCGCC..TG
TRGJP2_F_Homsap   
------ATAGTA.TGA.--TGGAT..A..CG....CAAA...G..T.GGC.CA.A..----AACTTCG..TG
TRGJP1_F_Homsap   
------ATACCACTGG.--TGG.T..A...A....C..A...G..T..GC.CA.A..----AACTTCA..TG
TRGJ1_1_F_Oviari  
------ACAGCGAGGGC--TGGA.G.A...A.....A.A....G.T..CA.CA.AA.----AACTCCT..CG
TRGJ2_1_F_Oviari  
------ACAGCTCGGGC--TGGA.G.A...A.....A.A....G.T..CA.CA.A..----AACTCCT..CG
TRGJ4_1_P_Oviari  
------ATGGCTC.GAA--TGAA.G.A...A.....AAA....C.T..GC.CA.AA.----AGCTCCC.ATG
TRGJ5_1_F_Oviari  
-----AATCATT.TGACA.GGGAT..A.G.A.......A......T..GC.CG.A..--------------.
TRGJ1_1_F_Camdro  
------ATAGCTCGGGC--TGGAGG.A..CA.....AAA...G..TG.GC.CA.A..----AGTTCCC.TTG
TRGJ3_1_F_Oviari  
------ACAGTTC.GGC--TGGA.G.A...A.....AAA..C...TG.GC.CA.A..----AGCTTCC..TG
TRGJ6_1_F_Oviari  
------ACAGCTC.GG.--TGG---.A...G.....A.A......T..GC.CA.A..----AGCTCCCTGTG
TRGJ1_F_Turtru    
------ATAGGTC.GG.--TGGAT..A...A.....A........T..GC.CA.A..----AACTCTC..TG
;
end;