#NEXUS [ Title AllineamentoVgamma2.txt] begin taxa; dimensions ntax= 24; taxlabels TRGV6_1_F_Oviari TRGV2_F_Camdro TRGV3_F_Homsap TRGV5_F_Homsap TRGV8_F_Homsap TRGV2_F_Homsap TRGV4_F_Homsap TRGV1_F_Camdro TRGV2_1_F_Oviari TRGV8_1_F_Oviari TRGV9_1_F_Oviari TRGV1_F_Oviari TRGV5_1_F_Oviari TRGV5_2_F_Oviari TRGV9_F_Homsap TRGV11_1_P_Oviari TRGV1_F_Turtru TRGV4_F_Oviari TRGV10_ORF_Homsap TRGV3_1_F_Oviari TRGV3_2_F_Oviari TRGV11_ORF_Homsap TRGV7_F_Oviari TRGV2_F_Turtru ; end; begin characters; dimensions nchar= 341; format missing=? gap=- matchchar=. datatype=nucleotide interleave=yes; matrix [!Domain=Data property=Coding CodonStart=1;] TRGV6_1_F_Oviari --------------GTATCCA----GCAGGAGATCAGGCTGTCACAGCGGTCCGTGATGGTGGGGTCCG---CGGGTG TRGV2_F_Camdro ---------------------------GA.GT.-----AG.CTGGT..A.C.G.CCC.....AT.G.GCGCA.CA.G. TRGV3_F_Homsap --------------TCT....----A.TT.GA.-----GG.AG.AC.AA...A..C.CCAG.CA.A------.T..GT TRGV5_F_Homsap --------------TCT....----A.TT.GA.-----GG.GG.AC.AA...A..C.C.AG.CC.A------.TA.GT TRGV8_F_Homsap --------------TCT....----A.TT.GA.-----GG.AG.ACAAA...A..C.CCAG.CCAA------.T..GT TRGV2_F_Homsap --------------TCT....----A.TT.GA.-----GG.AG.AC.AA...A..C..CAG.CA.A------.T..GT TRGV4_F_Homsap --------------TCT....----A.TT.GA.-----GG.AG.AC.AA...A..C..CAG.CA.A------.T..GT TRGV1_F_Camdro --------------TCT....----A..T.GA.-----GG.GACA..AC...A..C.CAA..AA.A------TA..AT TRGV2_1_F_Oviari --GTCATGCAGGTGTCT....----A..T.GA.-----GG.GAGA..AT...AA.T.CTAA..CAG.T.TGC.T..G. TRGV8_1_F_Oviari -----ACACAGGTATCT....----A..T.G..-----GA.GACA..TT...A..C.C.AG..C.A------.T..GT TRGV9_1_F_Oviari --GTCACTCAGGTATCT....----A..T.GA.-----GGCGACAG.AT...AA.C.CCAG..CAG------.T..GT TRGV1_F_Oviari --GTCACTCAGGTATCT....----A.GCA.A.-----GG.G.C...AT...A..C.CT.CTAA.A------.TT.G. TRGV5_1_F_Oviari --GTCATGCAGGTATCT....----A.TT-----------------.AT..TAA.C.CTAGAAA.A------.T..G. TRGV5_2_F_Oviari ------------AATCT....----A.TT-----------------.AT..TAA.C.CTAGAAA.A------.T..G. TRGV9_F_Homsap --------------.C.GGTC----A.CTAGAG-----.AAC.T..AATT...AGT.CTAAAAC.C------T.TCAA TRGV11_1_P_Oviari ---TTGTGTGTGTAT.G.A..GGTCATCTAGAG-----.AAC.T..AATT...AGT.CCAAAAA.C--------T..C TRGV1_F_Turtru TATGTGTGTATGGT.C.GGTC----ATCTAGAG-----.AAC.T..A.TC...ACT.CCAAAAA.C------T.TCAA TRGV4_F_Oviari ----------GGAGAC...A.----AAT.AGA..TTCT.A.AAT..A.TC...TCT.CCCGAA.AC------.A.ACA TRGV10_ORF_Homsap --------------T....A.----AAGT.GAG-----.A..TC....TA...A.TTCCAC..AAG------TCAAGA TRGV3_1_F_Oviari ------------GGT....A.----AAGT.GAG-----.A.G.C..AATC...C.TTCCACA.AAG------TAAAGA TRGV3_2_F_Oviari --TCTGGACTTGGGT....A.----AAGT.GAG-----.A.G.C..AATC...C.TTCCACA.AAG------TAAAGA TRGV11_ORF_Homsap --------------C.TGGGC----AGTT.GA.-----.AAC.TG.AATA..TA.TTCCAGACCAG------.AAA.A TRGV7_F_Oviari --TTTGGCCTTGGGCA..TA.----CTTT.GAG-----.AAC.TG.ATTA..A..T.CT.GAACAA------GA.AAA TRGV2_F_Turtru ---TTGGCCTTGGGCA..TA.----AGTC.GAG-----.AAC.TGTAATA..A..T.CT.GA.TAA------GA.A.A TRGV6_1_F_Oviari GAGCTATGACTATGCCTTGCAGTGTCAGTAAGT---------CTGTGGATTACGTCCACTGGTTCCGCCAGCTGGAGG TRGV2_F_Camdro .CT.G.CT..CC....C...C.GAC.TACGGC.---------....CACC..T..........A......A....... TRGV3_F_Homsap C.T..GCTGAA..CA.....GA.C.T.C.GTAACAA------A.ACCTTC...A.........A..TA..C.A..... TRGV5_F_Homsap C.T..GCTGAA..CA....TGACC.T.C.GTAATAA------A..CCTTC...A.........A..TA..C.A..... TRGV8_F_Homsap C.T.AGCTGTA..CA....TGA.C.TCC.GTAGAAA------A..CC.TC...AC........A..TA..C.A..... TRGV2_F_Homsap C.T..GCTGAA..CA....TGA.C.TGC.G.AGGAA------G.AAC.GC...A.........A..TA..C.A..... TRGV4_F_Homsap C.T..GCTGAA..CA....TGA.C.TGC.G.AGGAA------G.ACC.GC...A.........A..TA..C.A..... TRGV1_F_Camdro CGT..T.TGAA...A....TGA.C.T.A..CACAAA------G...CA.C..TA.........ATAAATTCGG...CA TRGV2_1_F_Oviari C.TT.G.TGAA..CAT...TGA.C.T.TC.CCCAAA------.C..CA.A..TA.........A.AAG..C.A..... TRGV8_1_F_Oviari C.T..G.TGTA..CGA...TGA.C.---..CACAAA------------.C..TA.........A.AAATTC.A..... TRGV9_1_F_Oviari CCT..GCTGTA..C.....TGA.C.TCC..CACAAA------ACA.CA.A..TA.........A.AAATTC.A..... TRGV1_F_Oviari ACA...CTT..T.CA....TGA.T.---..CACAAG------A...CA.A..TA.....CT..A.AAA..A.A..... TRGV5_1_F_Oviari AGA..GCTT.GT.C.....TGA.C.---..CACACG------GG.CTATC..TA......T..A.AAA..TGA..... TRGV5_2_F_Oviari AGA..GCTT.GT.C.....TGA.C.---..CACAAG------GG.CCACC..TA......T..A.AAA..TGA..... TRGV9_F_Homsap A.A.AGCCCGCC..GAA..TGTG..GTC.GGAATAACAATTT...CAACA.CT..AT.T....AT..AG..AGACCT. TRGV11_1_P_Oviari T.A.AGCCCGCC..GAA..T--------------AACAATTTT.ACCACA.CT..AT.T....GT.AAG.AAGACCT. TRGV1_F_Turtru A.A.AGCCCGCC..GAA...GTG..ATC.GGTGTAACCATTT..AAAATG.CT..AT.T....AT.AAG.AAGACCT. TRGV4_F_Oviari ..A.AG..CAC..AAG.....AGC.GTCAGG.GTTCCCCTGGAGAAT.CCATT..G.......AT.AAG..AAA..A. TRGV10_ORF_Homsap A.AG...TGAC..A.......AGA.ATCG.GCACAAGGTTTGAAACA...GT.A.T.......A...G...AAACCAA TRGV3_1_F_Oviari A.AG...TGAC..A.A.....AGA.AGAG.GCACAGATTTTGAATCA..AGCT..TT......A...G...AAAAG.A TRGV3_2_F_Oviari A.AG...TGAC..A.A.....AGA.AGAG.GCACAGATTTCGAATCA..AACT..TT......A...G...AAAAG.A TRGV11_ORF_Homsap AGAG.GCCCAC..AT....G.AG.CATCC.TCCAAGGCTTTAGCAGTA.AAT.A.A.......A.T.G...AAACCAA TRGV7_F_Oviari AGAG...A.T....A......AG..GTTCTCTAAGGACTTTAGCAAA......A.........A...G..AAAACCT. TRGV2_F_Turtru AGAG.G.AGT...AT......AG..ATCCTCTCAAGACTTTAGCAAC..A...A.........A...G..TAAACCAA TRGV6_1_F_Oviari GCCAGGCCCCTGAGAGGCTTCTCTATCTAGCCTTGTCCAAGCGGGATGTGCAGTGGGATTCAGTCCTAGGAGGTGATA TRGV2_F_Camdro ...G......C........C........G........G...A...................G..A..GA......... TRGV3_F_Homsap .GA.......AC..C.T.....G..CTAT.A.G.C....CCGCAAGG.ATGT..T...A....GA..CA.TCCA.GA. TRGV5_F_Homsap .GA.......AC..C.T.....G..CTAT.A.G.C.....CTCAA.G.ATGT..T...A....GA..CA.TCCA.GA. TRGV8_F_Homsap .GA.......AC..C.T.....G..CTAT.A..CC.A...CTCCAGG..TGT..T...A....GAA.CA.TC.A..A. TRGV2_F_Homsap .GA.......AC..C.T....AG..CTAT.A..CC.A...CTCCA.G..TGT..T...A....GAG.CA.TCCA.GG. TRGV4_F_Homsap .GA.......AC..C.T.....G..CTAT.A..CC.A..CCTCCAGC..TGT..T...A....GAA.CA.CCCA.GG. TRGV1_F_Camdro .GACA..T..ACGAC.C..AT....CTAT.ATG.C.A.T.CAAAATGACTTC..AC..C....GAA.C.ATC.AA.G. TRGV2_1_F_Oviari ..ACA..T..CCGAC.C.....T..CTAC.A.A.C...T.CTCAA.GA.TGT..T...A....GAA.CA.T.AA.GG. TRGV8_1_F_Oviari .AACT.TG..CCGAC.C........CTAC.ATG.C.A.T.CTCAA.G..TGTA.T...C....GAA.CA.T.AA.GG. TRGV9_1_F_Oviari .AATA---..CCGAC.C........CTAT.ATG.C...T.CTCAA.G..TGT..T...A....GAA.CA.TCCA.GG. TRGV1_F_Oviari .GAT...T..CCGAC.T...T....CTAC.ATG.C.A.T.CTCCA.GA.TG...TC..A....GAA.C.ATAAA.CA. TRGV5_1_F_Oviari .GAT......CCGAC.C...T.A..CTAT.A.AGC.A...CTCAA.GCCTGT..TT..A....GAA.CA.T..AACA. TRGV5_2_F_Oviari .GAT......CCGAC.C...T.A..CTAT.A.AGC.A...CTCAA.GCCTGT..TT..A....GAA.CA.T..AACA. TRGV9_F_Homsap .TG.A.T.ATAC..TTC..GG.G.CC---ATT.CA.ATG.CG.CAC...CAGAAA...A..C.G.A.TCCGTCA.GC. TRGV11_1_P_Oviari .TT.A...ATGC..CAC..G..AC.C---ATT..C..T..CACC---..CA.AA....AG...G.A.TCTGTTGAGC. TRGV1_F_Turtru ..G.A...ATGC..CAC..G..AC.C---ATT..AC.T..CAACACC..CAGAA....C....A.G.TAC.CTG.GC. TRGV4_F_Oviari .GG..C...TGA.AC.AA.C..T...---.G..CAG.T..CA.TT..AA..T.GACA.AC.TAATTCCC.TTTG..G. TRGV10_ORF_Homsap AT.....TTTG...CAC..GA.....A.T.T..CAA.A..ATCC.CA.CT.GAC.CAGCATG.GTAAGAC.A.CA.C. TRGV3_1_F_Oviari AT.....TTTG...CAT..GG.T...---.TGA.C..A.CCACAAC..CAGCTC.AA..CA...AGAC..GAAGA.C. TRGV3_2_F_Oviari AT.....TTTG...CAT..GG.T...---.TGA.C..A.CCACAAC..CAGCTC.AA..CA...AGAC..GAAGA.C. TRGV11_ORF_Homsap A.A.A.G.TTA..ATATT.AT.AC..---.T...C.TG.CAATCTC..CT..AGATTGC....GTGGGAAGAC.A.G. TRGV7_F_Oviari AT....GTTTA..ACA...A..A...------G.C..A.CAGCCCC..C....AATC.C.T..GAGGGAAGAAAA.C. TRGV2_F_Turtru AT....GTATA..ACAT..AGCA..C------G.CGTA.CAGTCCC..CT.TAAAA..C.T..GAGGGAAGAAAA.C. TRGV6_1_F_Oviari AAGTCAGCGCAGCCCGCGGCGGGGATGGCAAGAGCTGCACCATGTCCTTGAGGAAGCTGGCGAAGAGCGACGAGGGAC TRGV2_F_Camdro ......A...CCAGGTGAA.AAC.......GA......TT.T....GC...T........A....GCT..T.....CA TRGV3_F_Homsap .GTATTATA.TCATACACC.---AGGA.GTG......G.TAT..AGAC..CAA..T..AATTG.A.AT..TTCT..GG TRGV5_F_Homsap .GTATTATA.TCATACACC.---AGGA.GTG......G.TAT..ATAC.AC.A..T..AATTG.A.AT..TTCT..GG TRGV8_F_Homsap .GTATCATA.TTATGCAA..---ACA..G......CTT.AAT.TATAC..GAA..T..AATTG.AC.T...TCT..GG TRGV2_F_Homsap .GTATTATA.TTA.GCAA..---ACAA.G..C.A..TG.GAT..ATAC..C.A..T..AATTG.A.AT...TCT..GG TRGV4_F_Homsap .GTATGATA.TTATG.AA..---ACAA.G....A..TG.GA...ATAC..C.A..T..TATTG.A.AT...TCT...G TRGV1_F_Camdro ..TC.C.T..TTATGAA..A---.CA.AG....AAAAT.AAC..CT.A.CTCC..T....AAG.C.....TTCT..CA TRGV2_1_F_Oviari .GTA..AA.TTTATAAA.A---------G.......AT..TT.TG.AA.CTCA..C...CAAG.A..T..TTCT...A TRGV8_1_F_Oviari ..TA.CA..TTTA.AAA...---ACA..G.......A...GT.CGTAA.CTCA..CT..CAAG.A..T..TTCT..CA TRGV9_1_F_Oviari ..TA.CA.TGCTATGAA...---ACA.A.....TA.AT.AAT.TGTAA.CTCA.GT..TCAAG.A..T..TTCT...G TRGV1_F_Oviari ..TA...T.TTTATAAA..T.CA.CA..A.G.....A..GAT.TG.AA.CCTA..T....AAC.C..T..TTCT..GA TRGV5_1_F_Oviari ..TA.CAT.TCTATAAG...---ACA..G.GT....AT..AT.TA.AA.CGTA..T...CAAGCA..T..TTCC..CA TRGV5_2_F_Oviari ..TA.CAT.TCTATAAG...---ACA..G.G.....AT..AT.TG.AA.CCT...T...CAAGCA..T..TTCC..CA TRGV9_F_Homsap ..T.TGAG.TG.ATA.GATACCT..AACGTCT.CA.C...TC.CA..A.TCAC..TG.A.A...ACAG...ATA.CTA TRGV11_1_P_Oviari .GT.TGAG....A.A.GATACCT..AACTTCT.CA.CG...C.CA.TG.TCAC..TGCACG.GGAC.A...TCT.CCA TRGV1_F_Turtru .GT.TGAG....A.AAGAAACCC..AACTTCT.CG.CG...C.CA..A.TCAC..TG.ACA.G.ACAA....C..CCA TRGV4_F_Oviari TG.AT.A.AA.AAGAAT..A------------.T..TTTA.C..ATAA.C.AT..CG.T.TC...TC...T..A.CCA TRGV10_ORF_Homsap ....GGAG...AGAAAGAATTCTC.AACTCTC.CT.CA.T.C.TA..A.C.A.TCCG.A.A...AGAA...AT..CCG TRGV3_1_F_Oviari ..A.TGAG...AGAAAA.A..CTCGAATGTTC.CT.CG...C.TA.GG.A.ATTTTG.A.AA..AGAA..T.T...CA TRGV3_2_F_Oviari ..A.TGAG...AGAAAA.AT.CTC.AATGTTCGCT.CG...C.TATGG.A.ATTTTG.A.AA..AGAA..T.T...CA TRGV11_ORF_Homsap ..C.TGAG.T.AGTAAAAAT.CTC.CACTTCC.CT.C...TT..AAAA.A.A.TTCT.A.A...AGAA..T....TGG TRGV7_F_Oviari .GC.TGAG..CAGAAAA.AT.CTCCCTCTTCC.CT.CT...T..AAAA.A..TTTTT.A.A...AGAA..T....CTA TRGV2_F_Turtru .GA.TGAG..CAGAAAA.A..TCCGCAC.TCC.CT.CT...T..AA.A.A..ATTCT.ACA...AGAA..T....CCA TRGV6_1_F_Oviari TGTACTACTGTGCTGCCTGGGGATCGG-- TRGV2_F_Camdro C....................ACG.C--- TRGV3_F_Homsap .C..T........CA......ACAG.--- TRGV5_F_Homsap .C..T........CA......ACAG.--- TRGV8_F_Homsap .C..T........CA......ATAG.--- TRGV2_F_Homsap .C..T........CA......ACGG.--- TRGV4_F_Homsap .C..T........CA......ATGG.--- TRGV1_F_Camdro C....CG......CAT....--------- TRGV2_1_F_Oviari ...............T.....AGAA.--- TRGV8_1_F_Oviari C..............T.....AGAA.--- TRGV9_1_F_Oviari .....C.........T.....AGAA.--- TRGV1_F_Oviari C..............T.....ATAA.--- TRGV5_1_F_Oviari .A............AT.....ATAA.--- TRGV5_2_F_Oviari .A............AT.....ATAA.--- TRGV9_F_Homsap CC...........CTTG....AGGT.--- TRGV11_1_P_Oviari CC..T........CCT.....ATGT.--- TRGV1_F_Turtru CC.....T.....CCT.....A.GT.--- TRGV4_F_Oviari CT...........CTG.....ATCT---- TRGV10_ORF_Homsap .T..............G...T.GGT..C- TRGV3_1_F_Oviari .T.............G....A.C.----- TRGV3_2_F_Oviari .T.............G.....-------- TRGV11_ORF_Homsap .....C.......CTG....ATTAG.CAC TRGV7_F_Oviari CA...........C.G....TTGAGC.CC TRGV2_F_Turtru C............CTGG....TT.A---- ; end;