#NEXUS [ Title AllineamCgamma2.nex] begin taxa; dimensions ntax= 11; taxlabels TRGC1_F_Homsap TRGC2_F_Homsap TRGC1_F_Camdro TRGC2_F_Camdro TRGC6_F_Oviari TRGC3_F_Oviari TRGC4_F_Oviari TRGC1_F_Oviari TRGC2_F_Oviari TRGC5_F_Oviari TRGC_F_Turtru ; end; begin characters; dimensions nchar= 662; format missing=? gap=- matchchar=. datatype=nucleotide interleave=yes; matrix [!Domain=Data property=Coding CodonStart=1;] TRGC1_F_Homsap GATAAACAACTTGATGCAGATGTTTCCCCCAAGCCCACTATTTTTCTTCCTTCAATTGCTGAAACAAAGCTCCAGAAG TRGC2_F_Homsap ....................................................................A......... TRGC1_F_Camdro -C..GCG.C...........C.......................C..G................T...C.....TCG. TRGC2_F_Camdro ....G.GGGT..........CA.GGG.....................G......G.........T...C.A...TCG. TRGC6_F_Oviari -.....A.C...CC.A.....A.CAT......A.....A..................AA...GGTC..C.AT..AC.. TRGC3_F_Oviari ....G.G.C......AA...CA.G..T..............G...........G...A.G....TC....GTG.T..T TRGC4_F_Oviari A...G.A.C....C.A....CC....A..........T..........................TC..C.A.AGT..A TRGC1_F_Oviari -.G.G.A.C....C......CAC................G...................C....TC..C.ATG.T..T TRGC2_F_Oviari ..G.G.A.C....C......CAC................G...................C....TC..C.ATG.T..T TRGC5_F_Oviari ....G.AGG.......G...CT.G.TT..............A...T........G...AG...GT...A.G...T.GT TRGC_F_Turtru -...G.AGC.......G...CA.G..T..............A...........G....A.....T...C.....TG.. TRGC1_F_Homsap GCTGGAACATACCTTTGTCTTCTTGAGAAATTTTTCCCTGATGTTATTAAGATACATTGGCAAGAAAAGAAGAGCAAC TRGC2_F_Homsap ......................................A...A................................... TRGC1_F_Camdro ........G..T...........G.....C..C.......G..........G.TTCC...A..........TGA.... TRGC2_F_Camdro ........G..T...........G...G.C............A........G.TTCC...A..........TGA.... TRGC6_F_Oviari A...C......T........C..G..A..T...........C.........G.TTC....A....G.....TG....A TRGC3_F_Oviari AG.........T...........G...G.C.........C...........G.TT.....AG......A.GAG..... TRGC4_F_Oviari A......................G..................A........G.TT.....A........G.TG..... TRGC1_F_Oviari ...........T........C..G....................G....CAG.GTC....AG..T...A..TGA...A TRGC2_F_Oviari ...........T........C..G....................G....CAG.GTC....AG..T...A..TGA...A TRGC5_F_Oviari .........C.T.....C......C....T.............C.......G....A...A..........TG....T TRGC_F_Turtru .........C.T.....C.....C.....G..............C......G.CT.....A..........TG..... TRGC1_F_Homsap ACGATTCTGGGATCCCAGGAGGGGAACACCATGAAGACTAACGACACATACATGAAATTTAGCTGGTTAACGGTGCCA TRGC2_F_Homsap .............................................................................. TRGC1_F_Camdro .G.......CAG......C....AG.....G.......C.G.A....G........GC.G......C.G..C.....T TRGC2_F_Camdro .G.......CAG......C....AG.....G.......C.G.A....G........GC.G......C.G..C.....T TRGC6_F_Oviari .GAG.....CC.......C....A..T...........C..TA.............G..C......C.G..A...A.. TRGC3_F_Oviari .AAG..T..CC............A..A.....T......CTT..............G..C......C.G..T...T.T TRGC4_F_Oviari .GAGC....CC.......C....A..T........C..C.CT..............GC.C......C.G..C...A.T TRGC1_F_Oviari .GAGC....CC.......C....A..............C..G..............GC.C......C.G..C...A.C TRGC2_F_Oviari .GAGC....CC.......C....A..............C..G..............GC.C......C.G..C...A.C TRGC5_F_Oviari ..A.......A......TC....A..T.T...C........T.................C......C.G..TC..A.T TRGC_F_Turtru .AAG......A.......C....A..T.T...C........T..T..............C......C.G..C...A.T TRGC1_F_Homsap GAAAAGTCACTGGACAAAGAACACAGATGTATCGTCAGACATGAGAATAATAAAAACGGAGTTGATCAAGAAATTATC TRGC2_F_Homsap ...G........................................................A................. TRGC1_F_Camdro ........CA....T..........T....G......A...C.....A........A...A........C.G...C.T TRGC2_F_Camdro ........CA....T.........GT....G......A...CAG...C....G.GGA.A.AC..G......G..ATAT TRGC6_F_Oviari ...G.C..CA..A.G.....G....TG.............T......A..CGC.GGA...AAA........G...C.T TRGC3_F_Oviari .G...C..CA....T..........TG..........A.........A.......GA...ACCA.......G...C.T TRGC4_F_Oviari .....C..CA....T........T.TC...G.....CA........GA....T..GA...A..A.......G...C.T TRGC1_F_Oviari .....C..TA....T...C....TGTG...G.T....A...CC....A....T.GGA...A..........G.....T TRGC2_F_Oviari .....C..TA....T...C....TGTG...G.T....A...CC....A....T.GGA...A..........G.....T TRGC5_F_Oviari A.....G..A...GA........TGT...........A............C...GGA...CG.........G...C.T TRGC_F_Turtru A....T...A....T..T....T.GT...........A...C.............GA...A..........G...C.T TRGC1_F_Homsap TTTCCTCCAATAAAGA-CAGATGTCATCACAATGG------------------------------------------- TRGC2_F_Homsap ................CAG.......C....G...------------------------------------------- TRGC1_F_Camdro ......T.C..T..TC-A..T.....CTTT.G.TACTGCT------------------------------ACTCCAGA TRGC2_F_Camdro ......T.......T.-A..T.....C.T.G..T.TCACT------------------------------ACTACTGA TRGC6_F_Oviari ......G..G.G..TG-A..T.T...G.C..G.T.TCGCT------------------------------ACTACTGA TRGC3_F_Oviari .....GG..G.G..TG-A..T....TCTT..G.T.TCACT------------------------------ACTACTAA TRGC4_F_Oviari ......T.......TG-A..T.....G.T....T.TCCCT------------------------------ACCACTGA TRGC1_F_Oviari ......T.......AG-A..T.....C.T..GCT.TCACT-------------------------------------- TRGC2_F_Oviari ......T.......AG-A..T.....C.T..GCT.TCACTACTACTGAGCCTCCAACTACTGAGCCTCCAACTACTGA TRGC5_F_Oviari ...T.....G.T..C.-A...G..TG---------------------------------------------------- TRGC_F_Turtru ..C...T....TG...-ATA.G....---------------------------------------------------- TRGC1_F_Homsap ------------------------------------------------------------------------------ TRGC2_F_Homsap -----------------------------------------------ATCCCAAAGACAGTTATTCAAAAGATGCAAA TRGC1_F_Camdro GCCGACAAATGATTGTTTGAAAGCTAAAAGCAAGGGCACTGCTGTTGATTCTACAAAAGCTTGTCCAGAAGATGACAG TRGC2_F_Camdro TTCTCCAAACGATTGTTTGAAGGATGAAAAAGAAGGCATTGTTAGTGATTCTACAAAAGCCTGCCCAAGAGATGGAAG TRGC6_F_Oviari GCCTCCGGATGATTGTTTGCAAGATGAAAGTGAAGTCACTGATACTGATTTTACAAAAGTTTGTTCAAGAGGTGAAAG TRGC3_F_Oviari ACCTCCAAATGATGGTTTGAAGGATAAAAG------------------------------------------TGAAAA TRGC4_F_Oviari GTCTCCCAGTGACTGTTTAAACCAGGAAAGCAAAGTTACCGGCACTGGTTCTAAAAAAGCTTGTCTGAAAGATGAAAG TRGC1_F_Oviari ------------------------------------------------------------------------------ TRGC2_F_Oviari GCCTCCAAATGATTGTTTGACTGATGAAAGCAAAGTTACAGGTACTGGTTCTAAAACAGCTTGTCTGAAAGACGAACG TRGC5_F_Oviari ------------------------------------------------------------------------------ TRGC_F_Turtru ------------------------------------------------------------------------------ TRGC1_F_Homsap ---------------------ATCCCAAAGACAATTGTTCAAAAGATGCAAATGATACACTACTGCTGCAGCTCACAA TRGC2_F_Homsap TGATGTCATC----ACAATGG................G........................................ TRGC1_F_Camdro TGAAGCCGCT----GTTGTTA..T.T.C.A.AGCC...CTG.......A...C..C...G.G.G........G.GAG. TRGC2_F_Camdro TGAAGCCACT----GGAATTA..T.T.C.A.AGC...CCTG.......A..GCA.C...G.G.G........G.GAG. TRGC6_F_Oviari TGTCTCTTCTAGAAGTCACCG..T.T.C.A.AGCA...CTG...----------....CG.GGA.......T.GG.GT TRGC3_F_Oviari ACAAGTCCCT----GTTGCAA..T.T.C.A.AGCA...CTG.......A...CA....C..G.A...........TG. TRGC4_F_Oviari CGAAGTCACT-GCTGATAATA..T.T.C.A.AGTG...CTGG......A..GCA....C..G.A...........TG. TRGC1_F_Oviari --------------ACTACTA.G..TCC.A.TG......TG.CT....A..GCAG.G.C..G.G............G. TRGC2_F_Oviari TGAAGTCACT-GGTGATACTA..T.T.C.A.GGCA...CAGG...G..A..GCAG.G.C..G.G............G. TRGC5_F_Oviari ------------------------.T.C.C.TGCC..CATG...A.A.G..G......C..G.A.......T.TG.G. TRGC_F_Turtru ------------------------.T.C.C.TGCC..CGTG...A.A.G..G....T.C..G.A............G. TRGC1_F_Homsap ACACCTCTGCATATTACATGTACCTCCTCCTGCTCCTCAAGAGTGTGGTCTATTTTGCCATCATCACCTGCTGTCTGC TRGC2_F_Homsap .............................................................................. TRGC1_F_Camdro G...G..C..C..C...GC...............G........C.G.C....C..CTG.G..G..G...T.CTC.... TRGC2_F_Camdro G...G..C..C..C...GC...............G........C.G.C....C..CTG.G..G..G...T.CTC.... TRGC6_F_Oviari ...A......T..C....CC...........C.............CCA....C....T..C..G.T........G.TT TRGC3_F_Oviari G.........C.......CA...........C...A.T.....CACA.C...C................C....G..T TRGC4_F_Oviari ..........C.......CA...........C....................C...AT...........C....G..T TRGC1_F_Oviari C.........C...A...CC......T.A..C......CT...CACA.....C....TGG......TT.C....G..T TRGC2_F_Oviari C.........C.......CC......T.A..C......CT...CACA.....C....TTG......TT.C....G..T TRGC5_F_Oviari G.........C.....T.CC...........C...........CA..A....C..CT........G...T....G..T TRGC_F_Turtru ......G...C.GC....CC........T..C...........CT.......C....T.......T...T....G..T TRGC1_F_Homsap TTAGAAGAACGGCTTTCTGCTGCAATGGAGAGAAATCA TRGC2_F_Homsap ..G................................... TRGC1_F_Camdro .GC.G.....A..CG.G...G.GC.C..GA..GGC..G TRGC2_F_Camdro .GC.G.....A..CG.G..GG.GC.C..GA..GGC..G TRGC6_F_Oviari ....G.....A.G.G.....CATG....GA...GC..G TRGC3_F_Oviari .C..G.....A.GCG....TG.....CAGA...GC..G TRGC4_F_Oviari ..C.G.....A.GCA.G.....TG....GA....C.TG TRGC1_F_Oviari ....G.....C.GCG....GA.TG.CT.GA...TC..T TRGC2_F_Oviari ....G.....C.GCAA......TG.C..GA...TC..G TRGC5_F_Oviari .CT.G..G.TA.GCA...T.A.......GA...TT.TC TRGC_F_Turtru G.........A..CG.....G..C....GA...GC..G ; end;