#NEXUS [ Title aln-fasta.txt] begin taxa; dimensions ntax= 45; taxlabels TRDV2_F_Homsap TRDV2_F_Turtru TRDV3_F_Homsap TRDV4_F_Camdro TRDV4_F_Oviari TRDV4_P_Turtru TRDV3_F_Oviari TRDV2_F_Oviari TRDV2S1_F_Camdro TRDV2S2_F_Camdro TRDV1_F_Homsap TRDV1S1_F_Oviari TRDV1S5_P_Oviari TRVD1S17_F_Oviari TRVD1S24_F_Oviari TRDV1S8_P_Oviari TRVD1S21_F_Oviari TRDV1S9_P_Oviari TRVD1S22_F_Oviari TRDV1S10_F_Oviari TRVD1S18_F_Oviari TRVD1S15_P_Oviari TRDV1S11_F_Oviari TRVD1S23_F_Oviari TRDV1_1_F_Turtru TRDV1_1D_F_Turtru TRDV1_1N_F_Turtru TRDV1S6_F_Camdro TRDV1S1_F_Camdro TRDV1S2_F_Camdro TRDV1S3_F_Camdro TRDV1S4_F_Camdro TRDV1S5_F_Camdro TRDV1S4_P_Oviari TRDV1S2_F_Oviari TRDV1S6_F_Oviari TRVD1S16_F_Oviari TRVD1S25_F_Oviari TRVD1S19_F_Oviari TRDV1S3_F_Oviari TRDV1S12_F_Oviari TRDV1S7_F_Oviari TRVD1S20_F_Oviari TRDV1S13_F_Oviari TRDV1S14_F_Oviari ; end; begin characters; dimensions nchar= 417; format missing=? gap=- matchchar=. datatype=nucleotide interleave=yes; matrix [!Domain=Data property=Coding CodonStart=1;] TRDV2_F_Homsap -----------GCCATTGAGTTGGTGC--------------------CTGAACACCAAACAG------TGCCTGTGTC TRDV2_F_Turtru ---------------------GA..CATGTCAGCTGTCACGTTGGGC..C..A.....G..AGGAGTG..T..----- TRDV3_F_Homsap --------------TG...CAAA..AA--------------------.CC.GAGTTCCC.G.---AC-CAGAC.GTGG TRDV4_F_Camdro --------------TC..CCAAA...A--------------------.CC.-G..GTCC.G.---GACCAGACAGTGG TRDV4_F_Oviari --------------TG.A.CCAA...A--------------------.CC.GAG.TCCC.G.--AGCAGAGAGTG.CA TRDV4_P_Turtru ACAAGGACGTGCTGTG.A.CCAA...A--------------------.CC.-G.TTTCC...---GAGCAGA.ACTGG TRDV3_F_Oviari --------GACAATG.....AGC.CT--------------------------G.TGT.C.TA---CAG..TA.AAAAA TRDV2_F_Oviari --------------GC...CAAA...A--------------------.CC..GCT..G..TA---CCG.AA.A.G.CA TRDV2S1_F_Camdro --------------GC..C.AAA..AA--------------------.CC..ACT..G..CA---CAGAAA.A.CACA TRDV2S2_F_Camdro --------------GC..C.AAA..AA--------------------.CC..ACT..G..CA---CAGAAA.A.CACA TRDV1_F_Homsap --------------GCCC..AA...TA--------------------..C..GC...GT..T---CAG.AT.CA..C. TRDV1S1_F_Oviari --------------------AAA..TA--------------------.CC..G....GC..T---ACA.AA.CAGTCA TRDV1S5_P_Oviari --------------GCGC..AGA..TA--------------------T.C..G....GC...---ACA.AT.C.GTCA TRVD1S17_F_Oviari --------------GCGC..AGA..TA--------------------T.C..G....GC...---ACA.AT...GTCA TRVD1S24_F_Oviari -----------.TAGCCC..AAA..TA--------------------T.C..G...CGC...---ACA.AT.CAATCG TRDV1S8_P_Oviari --------------CCCC..AAA..TA--------------------T.C..G.....C...---ACA.ATTCACTCA TRVD1S21_F_Oviari --------------GCCC..AAA..TA--------------------T.C..G.T...C...---ACA.ATTCACTCA TRDV1S9_P_Oviari --------------GCCC..AGA..TA--------------------..C..GG...GC...---ACA.TT.CACTCA TRVD1S22_F_Oviari --------------GCCC..AGA..TA--------------------..C..G....GC...---ACA.TT.CAGTCA TRDV1S10_F_Oviari --------------GCCC..AGA..TA--------------------..C..A....GC...---ACA.TT.CACTCA TRVD1S18_F_Oviari --------------GCCC..AGA..TA--------------------..C..G....GC...---ACA.TT.CAGTCA TRVD1S15_P_Oviari --------------GCCC..AAA..TA--------------------T.C..G....GC...---ACA.AT.CAGTCA TRDV1S11_F_Oviari --------------GCCC..AAA..TA--------------------..C..G....GC...---ACA.AT.CAGTCA TRVD1S23_F_Oviari --------------GCCC..AAA..TA--------------------..C..G....GC...---ACA.AG.CAGTCA TRDV1_1_F_Turtru ---GATTTGGT..GGCCC..AAA..TA--------------------..C..GT...GCG..---CCA..T.CAGTCA TRDV1_1D_F_Turtru ---GATTTGGT..GG.CC..AAA..TA--------------------..C..GT...GC...---CCA.AT.CAGTCA TRDV1_1N_F_Turtru ---GATTTGGT..GGCCC..AAA..TA--------------------..C...T...GC...---CCA.AT.CAGTCA TRDV1S6_F_Camdro --------------GCCC..ACA..TA--------------------..C..G....GC...---CCA.AT.CTCTCA TRDV1S1_F_Camdro --------------GCCC..ACA..TA--------------------..C..G....GC...---CCC.AT.CTCTCA TRDV1S2_F_Camdro --------------GCCC..ACA..TA--------------------..C..G....GC...---CAG.AT.CTCTCA TRDV1S3_F_Camdro --------------GCCC..ACA..TA--------------------.AC..G....GC...---CCA.AT.CTCTCA TRDV1S4_F_Camdro --------------GCCC..ACA..TA--------------------..C..G....GC..A---CAG.AT.CTCTCA TRDV1S5_F_Camdro --------------GCCC..ACA..TA--------------------..C..G....GC...---CAG.AT.CTCTCA TRDV1S4_P_Oviari --------------------CAA..AA--------------------..C..GT...G....---CTG.A..CAGTCA TRDV1S2_F_Oviari --------------------AAT..TA--------------------..C..A....G....---TCA.AATCAGTCA TRDV1S6_F_Oviari --------------------AAA..TA--------------------..C..T.T..GC...---ACA.AA.CAGTCA TRVD1S16_F_Oviari --------------GCCC..AAA..TA--------------------..C..G....GT...---ATG.AT.CAGCCA TRVD1S25_F_Oviari --------------GCCC..AAA..TA--------------------..C..G....GC...---ATA.AT.CAGCCA TRVD1S19_F_Oviari --------------GCCC..AAA..TA--------------------..C..G....GC...---ATA.AT.CAGCCA TRDV1S3_F_Oviari --------------GCCC..AAA..TA--------------------..C..A....GC...---ATA.AT.CAGCCA TRDV1S12_F_Oviari --------------GCCC..GAA..TA--------------------..C..A...GGC...---ATA.AT.CAGCCA TRDV1S7_F_Oviari ------------------------------------------------------------------------------ TRVD1S20_F_Oviari --------------------AGT..TA--------------------..C..G....GC...---ACA.A.TCAGTGA TRDV1S13_F_Oviari --------------------AAA..TA--------------------..C..G....GC...---ACA.AA.CCGTCA TRDV1S14_F_Oviari --------------------AAA..TA--------------------..C..G.....C...---ACA.AA.CAGTCA TRDV2_F_Homsap AATAGGGGTCCCT-GCCACCCTCAGGTGCTC-CATGAAAGGAGAAGCG------------------ATCGGTAACTAC TRDV2_F_Turtru -G.G....AAT..-.T...............-............CT.C------------------...A........ TRDV3_F_Homsap CGAGT..CAGTGAG.TGGTA..GCTC...A.TT.C..C.CTGT.TATT-----------------------C..A.C. TRDV4_F_Camdro CGAGT..CAGTGAG.TG..AT.GCCC...A.TTTC....CCGA.TA.T-----------------------C.GA.C. TRDV4_F_Oviari .G.G.CC.AGAG--.TG..A..GCA....A.CTTCC...CC.C.TATT-----------------------C..A.C. TRDV4_P_Turtru TGAGT..CAGTGAG.TG..A..ACAA...ATTTTCC...CC.C.TA.T-----------------------..GA.C. TRDV3_F_Oviari .GAG....AAT..-.TG...G.GGAA...AAGTTCTC.GTC..CTATA----------------------CAT....T TRDV2_F_Oviari GGA.A.A.AAG..-.TG...A.AG.C...A.GT......CCTCTCAGA----------------------C.T.T..T TRDV2S1_F_Camdro .GA...ACAAG..-.TG...A.GCAC...A.GT......CCTC.GCGC----------------------TG.GG..T TRDV2S2_F_Camdro .GA...ACAAG..-.TG...A.GCAC...A.GT......CC.C.GCAC----------------------AG.GG..T TRDV1_F_Homsap .G.GA..AAAG.A-.T......G.AC...CTGT......CA..TT.GT----------------------.GTCA..T TRDV1S1_F_Oviari ..C....CAAT..-.T..TT..G.AC..TCGGT.....GTA..TT.GA----------------GTGGGTAC.TGC.. TRDV1S5_P_Oviari .C.G..ACAGTTA-.T......G.AC..TCGGT...C..CA.CCT.GA----------------------.CT.T... TRVD1S17_F_Oviari .C.G..ACAGT.A-.T......G.AC..TCGGT...G..CA.CGT.GA----------------------.CT.T... TRVD1S24_F_Oviari ..CT....AAT.A-.TT.....A.AT..TCGGT......CA..CCAGA----------------------.CCGT... TRDV1S8_P_Oviari G..T..A.AGG.A-.T...TG.G.AC..T.GGTC.....CA..TT.GA----------------------.C.GT..T TRVD1S21_F_Oviari G..T..A.AGG.A-.T....A.G.AC..TCTGTG.....CA..TT.GA----------------------.C.GT... TRDV1S9_P_Oviari .G.TA...AGATA-.T......G..C..TCGAT....G.CAGATCA.A----------------------.CC.T... TRVD1S22_F_Oviari .G.T....AGGTA-.T...A..G..C..TCGAT....G.CA.TTCAGA----------------------.CCGT... TRDV1S10_F_Oviari .G.T....AGATA-.T.........C..TCGAT....G.CAGTTCAGA----------------------.CC.T..T TRVD1S18_F_Oviari .G.T....AGGTA-.T...A..G..C..TCGAT....G.CA.TTCAGA----------------------.CCGT... TRVD1S15_P_Oviari .G.T....AGT.A-......A.G.AC..TCAGT....G.CA..TT.GA----------------------.A.GT..T TRDV1S11_F_Oviari .G.T....AGTTA-......A.G.AC..TCAGT....G.CA..TT.GA----------------------.C.G...T TRVD1S23_F_Oviari .G.T....AGT.A-..TG..A.G.AC..TCAGT....G.CA..TC.GA----------------------AC.GT..T TRDV1_1_F_Turtru GC......AGG.G-.T....T.G..C..TCAGT......CA..CTTGA----------------------.CTGG... TRDV1_1D_F_Turtru GC......AGG.G-.T....T.G..C..TCAGT......CA..CTTGA----------------------.CTGG... TRDV1_1N_F_Turtru GC......AGG.G-.T....T.G..C..TCAGT......CA..CTTGA----------------------.CTGG... TRDV1S6_F_Camdro CG.G....AGA.A-.T......G.AC..TCGGT......CA..TGATA----------------------.C.TA... TRDV1S1_F_Camdro CT......AGT.A-........G.AC..TCAGT......CA..TTA.A----------------------CCG.A... TRDV1S2_F_Camdro CG.....CAGA.A-........G.AC..TCAGT......CA..TTATA----------------------.C.CA... TRDV1S3_F_Camdro CG......AGT.A-........G.AC..TCGGT......CA..TTATA----------------------.C.CA... TRDV1S4_F_Camdro CG......AGA.A-........G.AC..TCGGT......C...TT.GA----------------------.CT..... TRDV1S5_F_Camdro CG.....CAGA.A-........G.AC..T-AGT......CA..TTATA----------------------...CA... TRDV1S4_P_Oviari .G.G...CAGA.A-.T......G.AT..T.GAT.....GTA..TT.GA----------------CC.CG..CTT.... TRDV1S2_F_Oviari .G.G...AAGATA-.T......T.AC..TCAGT......TT..C..GA----------------ATG.ACA.G..... TRDV1S6_F_Oviari .G.GC..AA.GTA-.T..T...G.AC..TCGGT......CA..TT.GA----------------ACG.GTAC.C.... TRVD1S16_F_Oviari .G.G...CAGT.A-.T......G.AT..TCAGT......CA..CT.GA----------------------.CT.T... TRVD1S25_F_Oviari .G.G...CAGT.A-.T......G.AC..TCGGT......CA..CT.GA----------------------.AGTT... TRVD1S19_F_Oviari .G.G...CAGT.A-.T......G.AC..TCGGT......CA..CT.GA----------------------.AGTT... TRDV1S3_F_Oviari .G.G...CAAT.A-.T......G.AT..TCGGT......CA..CT.GA----------------------.CT.T... TRDV1S12_F_Oviari .G.G...CAAT.A-.T......G.AT..TCGGT......CA..CT.GA----------------------.CT.T... TRDV1S7_F_Oviari ----------T.A-.T......G.AT..TCAGT......CA..CT.GACTGCTTACTACATTTTTTGGTACA.G.A.. TRVD1S20_F_Oviari .G.G...AAGA.A-AT...G..G.AC..TCGGT......CA..TT.G.----------------AC..GTTG.G.... TRDV1S13_F_Oviari .G.G.A.CAGT.A-.T...T..G.AC..TCTGT.....GTA..TT.GT----------------AC..G.ACGC.... TRDV1S14_F_Oviari .G.G...CAGT.A-.TG..T..G.AC..TAAGT.....GTC..TT.GT----------------AC.AGATCTC.... TRDV2_F_Homsap T-----------------------------ATATCAACTGGTACAGG---------------------AAGACC-CAA TRDV2_F_Turtru .-----------------------------...C.TT..........---------------------..A..A-.CG TRDV3_F_Homsap AG----------------------------..T.ATT.......C..ATAAGGCCAGATTATTCCTTTC..TTTGTCT TRDV4_F_Camdro AG----------------------------..T.AT........C.AATGAGGCCAGGTCTTTCTCTTG..TTTGTCC TRDV4_F_Oviari AG----------------------------.CT.AT........C.AAAGACGCCAGATGCTGTCTTCC..TTTGTCC TRDV4_P_Turtru AG----------------------------TCT.AT........CAAATAAGACCAGATCGTTCCTTCT..TTTGTCC TRDV3_F_Oviari A-----------------------------TG..GT.......TC.A---------------------C..C.T-TCC TRDV2_F_Oviari A-----------------------------C.T.GTTT........A---------------------C..TTT-.CC TRDV2S1_F_Camdro A-----------------------------C.T.GT.........AA---------------------C..GGT-.CC TRDV2S2_F_Camdro A-----------------------------C.T.GT.........AA---------------------C..GGT-.CC TRDV1_F_Homsap .-----------------------------....TTTT.......A.---------------------C.ACTT-.CC TRDV1S1_F_Oviari .-----------------------------.CC.TTTT.....T.A.---------------------C..CTT-.CC TRDV1S5_P_Oviari .-----------------------------.CG.GTTT.......A.---------------------CT.CTT-.CC TRVD1S17_F_Oviari .-----------------------------.CG.GTTT.......A.---------------------CT.CTT-.CC TRVD1S24_F_Oviari A--------------------------------.TTTT.......A.---------------------C.CCTT-.CC TRDV1S8_P_Oviari A-----------------------------....TCTT.....T.A.---------------------C.AC.T-.CC TRVD1S21_F_Oviari A-----------------------------.C..TTTT.....T.A.---------------------C.AC..-.CC TRDV1S9_P_Oviari A-----------------------------.A..TTTT.....T.AA---------------------C.ACTT-.CC TRVD1S22_F_Oviari A-----------------------------.C..TTTT.......AA---------------------C.ACTT-.CC TRDV1S10_F_Oviari C-----------------------------.C..TTTT.......AA---------------------C.ACTT-.CC TRVD1S18_F_Oviari A-----------------------------.C..TTTT.......AA---------------------C.ACTT-.CC TRVD1S15_P_Oviari A-----------------------------.C.GTTTT.A...T.A.---------------------C..CTT-.CC TRDV1S11_F_Oviari A-----------------------------.C..TTTT.....T.A.---------------------C.ACTT-.CC TRVD1S23_F_Oviari A-----------------------------.C..TTTT.....T.A.---------------------C..CTT-.CC TRDV1_1_F_Turtru G-----------------------------....TTTT.....T.A.---------------------C..CTT-.CC TRDV1_1D_F_Turtru G-----------------------------T...TGTT.....T.A.---------------------C..CTT-.CC TRDV1_1N_F_Turtru G-----------------------------T...TGTT.....T.A.---------------------C..CTT-.CC TRDV1S6_F_Camdro .-----------------------------....TTTT.......A.---------------------C..C.T-.CC TRDV1S1_F_Camdro .-----------------------------....TTTT.......A.---------------------C..C.T-.CC TRDV1S2_F_Camdro .-----------------------------....TTTT.......A.---------------------C..C.T-.CC TRDV1S3_F_Camdro A-----------------------------....TGTT.......A.---------------------C..C.T-.CC TRDV1S4_F_Camdro .-----------------------------....TGTT.......A.---------------------C..C.T-.CG TRDV1S5_F_Camdro .-----------------------------....TGTT.......A.---------------------C..C.T-.CG TRDV1S4_P_Oviari .-----------------------------.C..TTTT.....T.AA---------------------C..CTT-.CC TRDV1S2_F_Oviari .-----------------------------GG..TTTT......CA.---------------------C..CTT-.CC TRDV1S6_F_Oviari .-----------------------------GG..ATTT.......A.---------------------C..CTT-.CC TRVD1S16_F_Oviari A-----------------------------.CC.TTTT.......A.---------------------C.ACTT-.CC TRVD1S25_F_Oviari .-----------------------------..C.TTTT.......A.---------------------C.ACTT-.CC TRVD1S19_F_Oviari .-----------------------------..C..TTT.......A.---------------------C.ACTT-.CC TRDV1S3_F_Oviari .-----------------------------.CC.TGTT.......A.---------------------C.ACTT-.CC TRDV1S12_F_Oviari .-----------------------------.CC.TGTT.......A.---------------------C.ACTT-.CC TRDV1S7_F_Oviari .TCCCAGTGGACAGATGACTTACCTTATTC.C..TTTT.......A.---------------------C..CTT-.CC TRVD1S20_F_Oviari .-----------------------------.C..TTTT.......A.---------------------C..CTT-.CC TRDV1S13_F_Oviari .-----------------------------CC..TTTT....T..A.---------------------C..CTT-.CC TRDV1S14_F_Oviari .-----------------------------CC..TTTT.......A.---------------------C..CTT-.CC TRDV2_F_Homsap GGTAACACAATCACTTTCAT---------------ATACCGAGAAAAGGAC--ATCTATGGCCCTGGTTTCAA-AGAC TRDV2_F_Turtru ...........G...C-----------------TC...TACC..G....GGGC.CA...............G.-.... TRDV3_F_Homsap TT..TGGGG..A..-----------AGCAGA--TC.G.AG.T.C.G.TTTT--.CTC.A..A.GGTT..CTGTG.A.. TRDV4_F_Camdro T...CAGGG..A..AC.-------------GAATCCCTTAAT.CGG.TTTT--GCTC.G..TAGATT..CTGT-GC.G TRDV4_F_Oviari T...CAGGG.CA..AC.-------------AGATCCCGTGAT.CGG.TTTT--GCTCGG..TAGATT.ACTGT-GC.G TRDV4_P_Turtru T.C.CAGG...A..A..-------------AAATCCC.TGAT.CGG.TCTT--GCTCGG..TAGATT..C.GT-GC.G TRDV3_F_Oviari A.CGGAGAG..G.T..A...GATTAATATTTATTCTC.AA.CA.GC..ACA--.GGG.A..A.GATAC.CTGT-G..A TRDV2_F_Oviari ...GGA.GG..GGAA...C.TATCTATCAGGATAGTA.T.A..C...T.CA--.GGAGG.AT.GCTAC.CTGT-.A.. TRDV2S1_F_Camdro A.CGGAGGG..GG.....C.TATTTATCAGGATGACA.TAAG.C...C.CA--.AGCGG.AT.GCTAC.CTGT-GA.. TRDV2S2_F_Camdro A..GGA.GG..GG....TC.TATTTATCAGGATGACA.TAAG.C..GC.CA--.AGCGG.AT.GCTAC.CTGT-GA.. TRDV1_F_Homsap A.C..AGAG..G.T....C.TATTCGCCAGGGTTCTG.TGA.C.G..T.CA--.AAAG...T.GCTA..CTGT-CA.. TRDV1S1_F_Oviari A..GGAGAG..G......C.TATTCGTCAGGAATCT.CTG.CCCG..T.CA--.GGA......GCTAC.CTGT-.A.. TRDV1S5_P_Oviari A.CGGAGAG..G.T..A.C.TATTCATCAGGTTTCT.CTG.CC.G..T.CA--.AGA......GCTAC.CTGT-.A.T TRVD1S17_F_Oviari AA.GGAGAG..G.T..A.C.TATTCATCAGGTTTCT.CTG.CC.G..T.CA--.GGA......GCTAC.CTGT-.A.T TRVD1S24_F_Oviari A..GGAGAG..G.T....C.TA---------------------------CA--.AGG......GCTTC.CT.T-.C.T TRDV1S8_P_Oviari A..GGAGAG..G.A....C.TA---------------------------CA--.GGG......ACTAC.CT.T-.A.T TRVD1S21_F_Oviari A..GGAGAG..G.T....C.TA---------------------------CA--.GGG......ACTAC.CT.T-.A.. TRDV1S9_P_Oviari A..GGAGAG..G.T..A.C.TATTGGTCAAGATTCT.CTA.CC....T.CA--.GG.......GCTAC.C.GT-.A.T TRVD1S22_F_Oviari A..GGAGAG..G.T..A.C.TATTGGTCAGGGTTCT.C.A.CC.G..T.CA--.GG.......GCTAC.CTGT-GA.T TRDV1S10_F_Oviari A..GGAGAG..G.T..A.C.TATTGGTCATGATTCT.CTA.CC.G..T.CA--.GA.......G.TAC.CTGT-.A.T TRVD1S18_F_Oviari A..GGAGAG..G.T..A.C.TATTGGTCATGATTCT.CTA.CC.G..T.CA--.GA.......G.TAC.CTGT-.A.T TRVD1S15_P_Oviari A..GGAGAG..G.T..A.C.TATCGGCCAGAATTCT..TA.CCC...T.CA--.GGG......GCTAC.C..T-.A.T TRDV1S11_F_Oviari C..GGAGAGC.G.T..A.C.TATTGGTCAGAATTCT..TA.CCCG..T.CA--.GGG.....TGCTAC.CT.T-.A.T TRVD1S23_F_Oviari A..GGAGAG..G.T..A.C.TATTGGTCAGAATTCT...A.CCCG..T.CA--.GGG......GCTAC.C..T-.A.T TRDV1_1_F_Turtru A..GGAGAG..G......C.TATTCATCAGAGTTCT.CTG.CC....T.CA--.AGA......GCTA..CTGT-.A.. TRDV1_1D_F_Turtru A..GGAGAG..G......C.TATTCATCAGATTTCT.CTGACC....T.CA--.AGA......GCTA..CTGT-.A.. TRDV1_1N_F_Turtru A..GGAGAG..G......C.TATTCATCAGATTTCT.CTGACC....T.CA--.AGA......GCTA..CTGT-.A.. TRDV1S6_F_Camdro A..GGAGAG..G......C.TATTCATCAGGGTTC..CTA.C.GG..T.CA--.ATAGA....GCTAC.CTGT-.A.. TRDV1S1_F_Camdro A..GGAGAG..G......C.TATTCAACAGTATTC..CTA.C.GG..T.CA--.AGAG.....GCTAC.CTGT-.A.. TRDV1S2_F_Camdro A..GGAGAG..G......C.TATTCGTCAAGAGTATA.T..C.GG..T.CA--.AGAG.....GCTAC.CTGT-.A.. TRDV1S3_F_Camdro A..GGAGAG..G......C.TATTCATCAGGGTTC..CTA.C.GG..T.CA--.AGAG.....GCTAC.CT.T-.A.. TRDV1S4_F_Camdro A..GGAGAG..G......C.TATTCATCAGGATTC..CTA.C.GG..T.CA--.AGAG.....GCTAC.CT.T-.A.. TRDV1S5_F_Camdro A..GGAGAG..G......C.TATTCATCAGGATTC..CTA.C.GG..T.CA--.AGAG.....GCTAC.CT.T-.A.. TRDV1S4_P_Oviari A.GGGAGAG..G.....GC.TATTCGTCAGTATTC.G.A.AC.GT..TACA--.GGA......GCTAC.CTGT-.A.. TRDV1S2_F_Oviari A..GGAGAG..G....A.C.CATTCATCAGTATTC.G.AGACAGG..T..A--.GGG......GCTAC.CTGT-.A.. TRDV1S6_F_Oviari A..GGAGAG..G....A.C.CATTCCTCAGTATTC.G.AGAT.GG..T..A--.GGG.C....ACTAC.CTGT-.A.. TRVD1S16_F_Oviari A..GGACAG..G....A.G.TATTCGTCAGAGTTC..TAGTCACG..T.CA--.CGA.A.A..GCTAC.CG.T-.A.. TRVD1S25_F_Oviari A..GGACAG..G....ATG.TATTCGTCAGGGTTC.G.AATGAC...C.CA--.GGA.A.A..GCTAC.CTGT-.A.. TRVD1S19_F_Oviari A..GGACAG..G....A.C.TATTCAACAGTATTC.GGATACAGC..T.CA--.GGA......GCTAC.CTGT-.A.. TRDV1S3_F_Oviari A..GGACAG..A....A.C.TATTCAACAGTATTC.G.AAACAGC..T.CA--.GGA.C....GCTAC.CTGT-.A.. TRDV1S12_F_Oviari A..GGACAG..A....A.C.TATTCAACAGTATTC.G.AAACAGC..T.CA--.GGA.C....GCTAC.CTGT-.A.. TRDV1S7_F_Oviari A..GGACAG..G....ATC.TATTCGTCAGTATTC.G.TGAT.GG..T.CA--.GGG......GCTAC.CTGT-.A.. TRVD1S20_F_Oviari A..GGA.AG..G....ATC.TATTCGTCAGCATTC.G.TGAT.GG..T.CA--.GGG.C....GCTAC.CTGT-.A.. TRDV1S13_F_Oviari A.GGGACAG..G.T..A.C.CATTTGTCAGTATTC.G.AGAT.GG..T.CA--.GGG.C....GCTAC.CTGT-.A.. TRDV1S14_F_Oviari A..GGACAG..G....A.C.CATTCGTCAGTATTC.G.AAAT.CG..T.CA--.GGG.C....GCTAC.CTGT-.A.T TRDV2_F_Homsap AATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGG TRDV2_F_Turtru ..C...........A......C..T....C....A......G..G..T..C..G.AGG...................A TRDV3_F_Homsap .CA...TG.---CC..GAA.GCC.TTC.C-------------T.GGT...CTC.C..GT.AGGACTGA...CAGT.CC TRDV4_F_Camdro --CACAATGT.GCT..GAA.AC..T.C.C-------------T.GGT...GTCCT..GTGAGG.CTGA...CAGT.CC TRDV4_F_Oviari --CA.AGCGT.A..AGCAA.ACC.T.C.C-------------T.GGT...CTCCT.TGTGAGGCCTGA...CACT.CC TRDV4_P_Turtru --CACAGCCT.ACC..CAA.ACC.T.C.C-------------T.GGT...CTCCT..GTGAGGCCTGA...CAGT.CC TRDV3_F_Oviari --...TAC.AACCCA.CCA.ATGCTG...-------------..C.CC..CTCA..CTTGA.GCT...T..CTCG.CC TRDV2_F_Oviari --....A..A.G..A.AAA.ATCAT..GC-------------..C.CC..CTC.T.CTTGCACCT.GCT..CTC..C. TRDV2S1_F_Camdro --..C.A..A.GC.A.GCA..CCAT..GC-------------..C.CC..CTCAT.TT..CAGCT.GC...CTC...A TRDV2S2_F_Camdro --..C.A..A.GC.A.CCA..CCAT..GC-------------..C.CC..CTCAT.TT..CAGCT.GC...CTC...A TRDV1_F_Homsap --..CAAG.AAGC.GCGAA..CCGT.GCC-------------T.A.CC..TTCA..CTT.CAGCTAGA....TC..CA TRDV1S1_F_Oviari --....AG..AGC...GAACACCAT..GC-------------..C.CC..TTC...CTT.CAGTT.GA...CTCC.CA TRDV1S5_P_Oviari --A...AG.AAGCT..AAA..CCAT..GC-------------..C.CC..TTCA.ATTT.CAGCT.GAG...TCT.CA TRVD1S17_F_Oviari --....AG.AAGCT.G.AA..CCAT..GC-------------..C.CC..CTCA.ATTT.CAGCT.GA...CTCT.CA TRVD1S24_F_Oviari --...GAC..AGT....AA..CC.C..GC-------------..C.CC..TTCAA.CTT.CA.TT.GA....TCT.CA TRDV1S8_P_Oviari --....AG..A.C.TT.AA..CC.C..GC-------------..C.CC..TTCAA.CTT.CA.CT.GA....TCT.CA TRVD1S21_F_Oviari --....AG..A.C.TG.AA..CC.C..GC-------------..C.CC..TTCAA.CTT.CA.CT.GA....TCT.CA TRDV1S9_P_Oviari --...AAG.TA.C..G.AA..TCAT..GC-------------..C.C...TTCA.ACTT.GAGCT.GA...CTCT.CA TRVD1S22_F_Oviari --..A.AG..A.C..G.AA..CCAT..GC-------------..C.C...TTCA.ACTT.GAGCT.GA...CTCT.CA TRDV1S10_F_Oviari --...AAG.TA.C..G.AA..TCAT..GC-------------..C.C...TTCA.ACTT.GAGCT.GA...CTCT.CA TRVD1S18_F_Oviari --...AAG.TA.C..G.AA..TCAT..GC-------------..C.C...TTCA.ACTT.GAGCT.GA...CTCT.CA TRVD1S15_P_Oviari --.A..AG..A.CC.G.AA.GCCAT..GC-------------..C.TT..CTCA..CTT..AGCT.GA...CTCT.CA TRDV1S11_F_Oviari --....AG..A.CC.G.AA.GCCAT...C-------------..C.TT..CTCA..CTT.AAGCT.GA...CTCT.CA TRVD1S23_F_Oviari --....TG..A.CC.T.AA.GCCAT..GC-------------..C.TT..CTCA..CTT.AAGCT.GA...CTCG.CA TRDV1_1_F_Turtru --....AGGAAA.....AA..TCAT..GC-------------..C.CC..TTCA.GCTT.CTG.T.GA....TCT.CA TRDV1_1D_F_Turtru --....AG.AAA.....AA..TCAT..GC-------------..C.CC..TTCA..CTT.CTG.T.GA....TCT.CA TRDV1_1N_F_Turtru --....AG.AAA.....AA..TCAT..GC-------------..C.CC..TTCA.GCTT.CTG.T.GA....TCT.CA TRDV1S6_F_Camdro --..C.GG.AAGC.G.AAA.GCCCT..GC-------------..C.CC..CTCAAACTT.CTGCT..A....TCT.CA TRDV1S1_F_Camdro --..CAGG.AAGC.G.AAA..CCCT..GC-------------..C.CC..CTCAAACTT.CAGCT..AG...TCT--- TRDV1S2_F_Camdro --..CAGG.AAGC.G.AAA..CCCT..GC-------------..C.CC..CTCAAACTT.CAGCT.GAG...TCT--- TRDV1S3_F_Camdro --..C.GG.AAGC.G.AAA..CCCT..GC-------------..C.CC..CTCAAACTT.CAGCT.GAG...TCT.CA TRDV1S4_F_Camdro --..CAGG.AAGC.G.AAA..CCCT..GC-------------..C.GC..CTCAAACTT.CAGCT.GAG...TCT--- TRDV1S5_F_Camdro --..CAGG.AAGC.G.AAA..CCCT..GC-------------..C.GC..CTCAAACTT.CAGCT.GAG...TCT--- TRDV1S4_P_Oviari --..C.TG.AAGC....AA..CCAT..GC-------------..C.TC..TTCA..CTT.CAGCGCGA...CTCT.CA TRDV1S2_F_Oviari --..C.AG.AAGC..G.AA..CCAT..GC-------------..C.CT..TTCATTCTT.AA.CT.GA.C..TCT.CA TRDV1S6_F_Oviari --....AG.ACGC....AAG.TCAT..GC-------------..C.CC..TTCAT.CTT.AAGCT.GAGC..TCT..A TRVD1S16_F_Oviari --...AAG.AAGCGG..AA..CCAT..GC-------------..C.CC..TTCA..CT-------------------- TRVD1S25_F_Oviari --...AAG.AAGC.G..AA..CCAT..GC-------------..C.TC..TTCAT.CTT.CAGCT.GA....TCT.CA TRVD1S19_F_Oviari --...AAG.AAGC.G..AA..CCAT..GC-------------..C.TC..TTCAT.CTT.CAGCT.GA....TCT.CA TRDV1S3_F_Oviari --..C.AG.AAGC.G..AA..CCAT..GC-------------..C.TC..TTCAT.CTT.CAGCT.GA...CTCT.CA TRDV1S12_F_Oviari --..C.AG.AAGC.G..AA..CCAT..GC-------------..C.TC..TTCAT.CTT.CAGCT.GA...CTCT.CA TRDV1S7_F_Oviari --..C.AG.AAGCT...AAG.CCAT..GC-------------..C.CC..TTCA..CTT.GAGCT.GA....TCT.CA TRVD1S20_F_Oviari --..C.AG.AAGCT...AAG.CCAT..GC-------------..C.CC..TTCA..CTT.GAGCT.GA....TCT.CA TRDV1S13_F_Oviari --..C.AG.AAGC.G..AAG.CCAT..GC-------------..C.CC..TTCA..CTT.CAGCT.GA....ACT.CA TRDV1S14_F_Oviari --..C.AG.AAGC.G..AAG.C.AT..GC-------------....CC..T.CA..CTT.CAGCTA.A....ACT.CA TRDV2_F_Homsap TCTTACTACTGTGC---CTGTGACACC TRDV2_F_Turtru ..............CTC----...CA. TRDV3_F_Homsap A.............CTTTA.------- TRDV4_F_Camdro A............TTCTG--------- TRDV4_F_Oviari A.............TTT--.GAG.T.. TRDV4_P_Turtru A............GCTTGC.GTC.--- TRDV3_F_Oviari GTC..T.T.....GTGT.A.A..GTT. TRDV2_F_Oviari AAG..T.T......TCT...G..ATA. TRDV2S1_F_Camdro AAG....T......TCT.--------- TRDV2S2_F_Camdro AAG....T......TCT.--------- TRDV1_F_Homsap AAG....TT.....TCTTG.G..ACT- TRDV1S1_F_Oviari AAG....TT.....AGT...G..ACT- TRDV1S5_P_Oviari GAG..T.T......TTA.ACAA.A.-- TRVD1S17_F_Oviari GAG..T.T......TCT...G..GCT- TRVD1S24_F_Oviari AAG....T...C..TCT...G..ACT- TRDV1S8_P_Oviari AAG....C......TCT..T...ACT- TRVD1S21_F_Oviari AAG....C..C...TCT..T...ATT- TRDV1S9_P_Oviari AAG....T.------------------ TRVD1S22_F_Oviari AAG....T...C..TCT...G..ACT- TRDV1S10_F_Oviari AAG....T...CA.TCT...G..ACT- TRVD1S18_F_Oviari AAG....T...CA.TCT...G..ACT- TRVD1S15_P_Oviari AAG....TT.....TCT...G..ACT- TRDV1S11_F_Oviari AAG....T......TCT...G..ACT- TRVD1S23_F_Oviari AAG....T......TCT...G..ACT- TRDV1_1_F_Turtru AAC....T......TCT...GA..T-- TRDV1_1D_F_Turtru AAC....T......TCT...G...CT- TRDV1_1N_F_Turtru AAC....T......TCT.C.G..ACT- TRDV1S6_F_Camdro AAG....T......TCT.A.A..AGG- TRDV1S1_F_Camdro --------------------------- TRDV1S2_F_Camdro --------------------------- TRDV1S3_F_Camdro AAG....T......TTT.GA..GA.G- TRDV1S4_F_Camdro --------------------------- TRDV1S5_F_Camdro --------------------------- TRDV1S4_P_Oviari AAG....T......TCT...G..GCT- TRDV1S2_F_Oviari AAG..T.T......TCT...G.TACA- TRDV1S6_F_Oviari AAA....T......TCT...G..ACG- TRVD1S16_F_Oviari --------------------------- TRVD1S25_F_Oviari AAG....T......TCT.C....ACT- TRVD1S19_F_Oviari AAG....T......TCT.......T-- TRDV1S3_F_Oviari AAG....T......TCT.C.....T-- TRDV1S12_F_Oviari AAG....T......TCT.C.....T-- TRDV1S7_F_Oviari AAG....T...CATTCT.A.A.TAT-- TRVD1S20_F_Oviari AAG....T...CATTCT.A.A.TAT-- TRDV1S13_F_Oviari AAG....T......TCT.C....ACT- TRDV1S14_F_Oviari AAG....T......TGT.A-------- ; end;