NEXUS
[File created by TreeBASE:  1/16/09  15:31:58]
[Matrix accession#: M3550]

BEGIN TAXA;
	TITLE M3550;
	DIMENSIONS  NTAX=34;
	TAXLABELS
		Alternaria_radicina_BMP0047	Alternaria_radicina_BMP0055	Alternaria_radicina_BMP0062	Alternaria_radicina_BMP0065	Alternaria_radicina_BMP0066	Alternaria_radicina_BMP0073	Alternaria_radicina_BMP0074	Alternaria_radicina_BMP0079	Alternaria_radicina_BMP0089	Alternaria_radicina_BMP0090	Alternaria_radicina_BMP0093	Alternaria_radicina_BMP0094	Alternaria_radicina_BMP0096	Alternaria_radicina_BMP0097	Alternaria_radicina_BMP0108	Alternaria_radicina_BMP0098	Alternaria_radicina_BMP0099	Alternaria_radicina_BMP0104	Alternaria_radicina_BMP0105	Alternaria_radicina_BMP0111	Alternaria_carotiincultae_BMP0064	Alternaria_carotiincultae_BMP0075	Alternaria_carotiincultae_BMP0076	Alternaria_carotiincultae_BMP0078	Alternaria_carotiincultae_BMP0095	Alternaria_carotiincultae_BMP0129	Alternaria_carotiincultae_BMP0130	Alternaria_carotiincultae_BMP0131	Alternaria_carotiincultae_BMP0132	Alternaria_carotiincultae_BMP0133	Alternaria_petroselini	Alternaria_selini	Alternaria_symrnii	Alternaria_alternate
	;
END;

BEGIN CHARACTERS;
	TITLE M3550;
	DIMENSIONS NCHAR=243;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Alternaria_radicina_BMP0047             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0055             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0062             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0065             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0066             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0073             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0074             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0079             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0089             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0090             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0093             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0094             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0096             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0097             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0108             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0098             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0099             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0104             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0105             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_radicina_BMP0111             TATGGCACCACTTTTCTTTC-ACACGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0064       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0075       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0076       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0078       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0095       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0129       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0130       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0131       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0132       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_carotiincultae_BMP0133       TATGGCACCACTTTTCTTTC-ACATGGACAGTTGCATCCACTCGGTGCTTCCTCTGCGCACGCAGTCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTTT-GGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCTAATTTTCCCATTTTGGCCCCAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_petroselini                  TATGGCATCACTTTTCTTTC-ACACGGACAGCTACATGCACTCGGTGCTTCCTCTGAGCGCGCAGCCAAAG--TGGCTTATCGCGATGAGGGGCATTTTTTTGGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCCAATTTCTCCATCTTGGCTACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_selini                       TATGGCATCACTTTTCTTTC-ACACGGACAGCTACATGCACTCGGTGCTTCCTCTGAGCGCGCAGCCAAAG--TGGCTTATCGCGATGAGGGGCATTTTTTTGGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATCCAATTTCTCCATCTTGGCTACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_symrnii                      TATGGCATCACTTTTTTTTCCACACGGACAGCTATATCCACTCGGTGCTTCCTCTGAGCGCGCAGCCAAAG--TGGCTTATCGCGATGAGGGGCATTTTTTTGGGTGGTGGG-ATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCGTTCGCGAACTCCAACACCATGACGCACATACAATTTCCCCATCTTGGCCACAGCAAGCTAACAAGCCTCATAGGAAGCCGCCGAACTC
		Alternaria_alternate                    TATGGCATCACTTTTCTTTC-ACGCGGCCTGTTGCGCCCACCCGGTGCTTTCTCTGAGCGCGTAGCCAAAGCCTGGCTTATCGCGATGAGGGGCATTTTT--GGGTGGTGGGGATGTGCGAACTTTTACGCGCTAGCGCTAGTCCGCATGCGGCCTTCGCGAACTCCAACGCAATGACGCACATGTAATTTCCCCATTCTGGCCACAGCGAGCTAACAAGCCTCACAGGAAGCCGCCGAACTC
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 243 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;