#NEXUS [written Mon Jun 27 17:17:14 BST 2016 by Mesquite version 3.04 (build 725) at DESKTOP-RN1VH2J/10.0.10.15] BEGIN TAXA; TITLE AA_concatenated; DIMENSIONS NTAX=13; TAXLABELS Phocine_distemper_virus_KC802221 Canine_distemper_virus_AY649446 Measles_virus_NC001498 Pilot_whale_morbillivirus_FJ842380FJ842382 Dolphin_morbillivirus_SC2572011PT Dolphin_morbillivirus_DD1912013PT Dolphin_morbillivirus_SG532012GZ Dolphin_morbillivirus_DD3022012PT Dolphin_morbillivirus_SC552012GZ Dolphin_morbillivirus_SC152007PT Dolphin_morbillivirus_AJ608288 Dolphin_morbillivirus_HQ829972 Dolphin_morbillivirus_HQ829973 ; END; BEGIN CHARACTERS; TITLE AA_concatenated_alignment; DIMENSIONS NCHAR=540; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Phocine_distemper_virus_KC802221 EMICDIDNYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTIESLMVLYQQMGETAPYMVILENSVQNKFCGEKVKGIEDADSLMVPAGPPSNRGFEGREGSLDDSIEDSSEDYSEGNASSNWGYTFGLNPDRAADVSMLMEEELTALLGTGHNAGGQKRDGRTLQFPNSPEGSIGNQACEPIKKGTGEKLASHGMMTAAGLTNGATAVKRLRESKMLTVSWYQQALQVIGDSKEEREALMIALKILAKIIPKEMLHLTGDILLALTQTEQL-DESSKIINQSPDKLLTFIASDTCSLVEIDGVTIQVGSRQYPDVVYASKVILGPAISLERLDVGTNLGSALKKLNDAKVLIESSDQILDTVKNSYLSLGTLIALPVSIGLGLILLLLICCCKKRYQHLFSQSTKVAPVFKPDLTGTSKSYVRSLMFSHQDKVGAFYKNNARANSSKLSLVTDEVEERRSPWFLSILLILLVGILILLAITGIRFHQVVKSNLEFNKLLIEDMEKTKAVHHQVKDVLTPLFKIIGDEVGLRLPQKL Canine_distemper_virus_AY649446 EMICDIDNYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTIESLMMLYQQMGETAPYMVILENSVQNKFSGEEVKGIEDADSLVVPAGAVSNRGFERGEGSLDDSTEDSGEDYSEGNASSNWGYSFGLKPDRAADVSMLMEEELSALLRTSRNVGTQKRDGKTLQFPHNSESKTGDPECGSIKKGTGERSASHGTGIVAGSTNGATAVKRLRESKMLTVSWYLQALSVIEDSREEREALMIALRILAKIIPREMLHLTGDILSALNQTGQLMDESGTIINQSPDKLLTFIASDTCPLVEIDGVTIQVGGRQYPDMVYESKVALGPAISLERLDVGTNLGNALKKLDDAKVLIDSSNQILETVRRSSFNFGSLLSVPILICTALALLLLIYCCKRRYQQTLKQNAKVDPTFKPDLTGTSKSYVRSLMLSYQDKVGAFYKDNARANSSRLSLVTEDQEGRRPPYLLFVLLILLVGIMALLAITGIRFHQVSTSNMEFSRLLKEDIEKSEAVHHQVIDVLTPLFKIIGDEIGLRLPQKL Measles_virus_NC001498 EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFAGELSTLESLMNLYQQMGETAPYMVILENSIQNKFSGEAVKGIQDADSIMVQSGLDGDSTLSGGDDESENSDVDIGEPDTEGYAITDRGSAPISMGFRASDVETAEGGEIHELLKLQSRGNNFPKLGKTLNVPPPPNPSRASTSETPIKKGTDARLASFGTEIASLLTGGATAVKRLRESKMLTLSWFNQALMVIAPSQEETMNLKTAMWILANLIPRDMLSLTGDLLPSLWGSGLLMDESGTIINQDPDKILTYIAADHCPVVEVNGVTIQVGSRRYPDAVYLHRIDLGPPISLERLDVGTNLGNAIAKLEDAKELLESSDQILRSMKGLSSTSIVYILIAVCLGGLIGIPALICCCRGRCNKKGEQVGMSRPGLKPDLTGTSKSYVRSLMSPQRDRINAFYKDNPHPKGSRIVINREHLMIDRPYVLLAVLFVMFLSLIGLLAIAGIRLHRAAIYTAEIHKSLSTNLDVTNSIEHQVKDVLTPLFKIIGDEVGLRTPQRF Pilot_whale_morbillivirus_FJ842380FJ842382 -------------GLASFILTIKFGIETMYPALGLHEFSGELTTIESLMNLYQQMGETAPYMVILL---------------------LVPTGSDDDAELRDGDESSLEGDDESGAVDPRGDPSSNRGSTSRIKVERSSDVEIISSEDLQGLIRSQNQKHNGLGGDRFLKVPPIPASVPLDPAFKSIKKGTGEKSASSGTETR------------------SSCSWFQQAVMMMQNSETEMRALSRAMMNLALLIPEEILPLTGDLLPGLRSRDRLTLKL-------PDKLLTFIAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPPISLEKLDVGINLGNALTKLDNAKDLLDSSNQILDNMRRSPFGGAMYIGVLACAGALVVLCVLIYCCKRYCHRRVQASPGAASGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDTPRPRNHRGLLDNERVIIERPLILVGVLAVMFLSLIGLLAIAGVRLQKATVNSIEVNKRLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGL------ Dolphin_morbillivirus_SC2572011PT GMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQCSW----------------FTGSDDDAELRDGDESSPESDGESGTVDTRGNSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPKSIKKGTGKRSALSGTETEFSLTSTAR---------------GSQAVMMMQNSETEMRALLRAMVNLALLIPEEILPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRMPQKF Dolphin_morbillivirus_DD1912013PT EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQN--KGQEVEGVKDADLLVVPTGSDDDAEFRDGDESSLESDGESGTVDTRGNSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPA---------------------------VKRLKESRMLTCSWFQQAVMMMQNSETEMRALLRAMVNLALLIPEEILPLTGDLLPGLRSRDRLTLRL--IISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDE--------- Dolphin_morbillivirus_SG532012GZ EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQNKLSGQEVEGVKDADLLVVPTGSDDDAEFRDGDESSLESDGESGTGDTRGNSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPKSIKKGTGERSALSGTETEFSLTSGATAVKRLKESRMLTCSWFQQAVMMMQNSETEMRALLRAMVNLALVIPEEILPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRMPHKF Dolphin_morbillivirus_DD3022012PT EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQNKLSGQEVEGVKDADLLVVPTGSDDDTEFRDGDESSLESDGESGTVDTRGNSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPKSIKKGTGERSALSGTETEFSLTSV--AVKRLKESRMLTCSWFQQAVMMIQNSETEMRALLRAMVNLALLIPEEILPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRMPQKI Dolphin_morbillivirus_SC552012GZ EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYHQMGETAPYMVILENSIQNKLSGQEVEGVKDADLLVVPTGSDDDAEFRDGDESSLESDGESGTVDTRGNSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLT-----------------------------------------AVKRLKESRMLTCSWFQQAVMMMQNSETEMRALLRAMVNLALLIPEEILPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRM---- Dolphin_morbillivirus_SC152007PT VMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQNKLSGQEVEGVKDADLLVVPTGSDDDAEFRDGDESSLESDGESGTVDTRGSSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPKSIKKGTGERSALSGTETEFSLTSGATAVKRLKESRMLTCSWFQQVVMMMQNSETEMRALSRAMVNLALLIPEEVLPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSSGGAMYIGILVCGGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLTVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRMPQKL Dolphin_morbillivirus_AJ608288 EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQNKFGGQAVEGVKDADLLVVPTGSDDDAEFRDGDESSLESDGESGTVDTRGNSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPKSIKKGTGERSALSGTETEFSLTGGATAVKRLKESRMLTCSWFQQAVMMMQNSETEMRALSRAMVNLALLIPEEILPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGA-VILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRMPQKL Dolphin_morbillivirus_HQ829972 EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQNKFGGQEVEGVKDADLLVVPTGSDDDAEFRDGDESSLESDGESGTVDTRGSSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPKSIKKGTGERSALSGTETEFSLTGGATAVKRLKESRMLTCSWFQQVVMMMQNSETEMRALSRAMVNLALLIPEEVLPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRMPQKL Dolphin_morbillivirus_HQ829973 EMICDIDTYIVEAGLASFILTIKFGIETMYPALGLHEFSGELTTVESLMNLYQQMGETAPYMVILENSIQNKFGGQEVEGVKDADLLVVPTGSDDDAEFRDGDESSLESDGESGTVDTRGSSSSNRGSAPRIKVERSSDVETISSEELQGLIRSQSQKHNGFGVDRFLKVPPIPTSVPLDPAPKSIKKGTGERSALSGTETEFSLTGGATAVKRLKESRMLTCSWFQQVVMMMQNSETEMRALSRAMVNLALLIPEEVLPLTGDLLPGLRSRDRLTLRLGTIISQDPDKLLTFVAADKCPLVEVDGITIQVGSREYPDSVYVSRIDLGPAISLEKLDVGTNLGSALTKLDNAKDLLDSSNQILENVRRSSFGGAMYIGILVCAGALVILCVLVYCCRRHCRKRVQTPPKATPGLKPDLTGTTKSYVRSLMSSPRDKVDAFYKDIPRPRNNRVLLDNERVIIERPLILVGVLAVMFLSLVGLLAIAGVRLQKATTNSIEVNRKLSTNLETTVSIEHHVKDVLTPLFKIIGDEVGLRMPQKL ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = AA_concatenated_alignment) = unord: 1 - 540; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = AA_concatenated_alignment) = universal: 1 - 540; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = AA_concatenated_alignment) = 'Mk1 (est.)': 1 - 540; END; BEGIN TREES; Title AA_concatenated_tree; LINK Taxa = AA_concatenated; TRANSLATE [0] n0 Phocine_distemper_virus_KC802221, [1] n1 Canine_distemper_virus_AY649446, [2] n2 Measles_virus_NC001498, [3] n3 Pilot_whale_morbillivirus_FJ842380FJ842382, [4] n4 Dolphin_morbillivirus_SC2572011PT, [5] n5 Dolphin_morbillivirus_DD1912013PT, [6] n6 Dolphin_morbillivirus_SG532012GZ, [7] n7 Dolphin_morbillivirus_DD3022012PT, [8] n8 Dolphin_morbillivirus_SC552012GZ, [9] n9 Dolphin_morbillivirus_SC152007PT, [10] n10 Dolphin_morbillivirus_AJ608288, [11] n11 Dolphin_morbillivirus_HQ829972, [12] n12 Dolphin_morbillivirus_HQ829973; TREE con_50_majrule = (((n3:0.07661,((n10:0.003235,(n9:0.012572,n11:0.001628,n12:0.001647):0.006332):0.005053,(n4:0.022255,n5:0.004981,n6:0.007647,n7:0.008954,n8:0.005356):0.007156):0.034292):0.22686,(n0:0.13454,n1:0.09816):0.375891):0.153308,n2:0.153308); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1467044234291; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3108591952542641892; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8895745811820998241; mqVersion 304; checksumv 0 3 2031414254 null getNumChars 540 numChars 540 getNumTaxa 13 numTaxa 13 short false bits 1048575 states 1048575 sumSquaresStatesOnly 5.1425318938456E13 sumSquares 5.1425318938456E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 254; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1362 649; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3108591952542641892 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3108591952542641892; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1108 577; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3108591952542641892 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 948.1467025697948.8712220390928073464; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1108 577; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8895745811820998241 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1108 577; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;