#NEXUS [written Tue Jul 19 13:59:57 IDT 2016 by Mesquite version 3.10 (build 765) at DESKTOP-MTKKK0E/132.77.106.255] BEGIN TAXA; DIMENSIONS NTAX=57; TAXLABELS Homo_sapiens_OBP2B Homo_sapiens_OBP2A Homo_sapiens_LCN1 Mus_musculus_Obp2a Mus_musculus_Obp2b Mus_musculus_Lcn4 Mus_musculus_Lcn3 Homo_sapiens_LCN9 Mus_musculus_Lcn9 Mus_musculus_Mup6 Mus_musculus_Mup14 Mus_musculus_Mup10 Mus_musculus_Mup13 Mus_musculus_Mup8 Mus_musculus_Gm21320 Mus_musculus_Mup11 Mus_musculus_Mup15 Mus_musculus_Mup2 Mus_musculus_Mup18 Mus_musculus_Mup5 Mus_musculus_Mup4 Mus_musculus_Mup1 Mus_musculus_Mup20 Mus_musculus_Mup3 Mus_musculus_obp1b Mus_musculus_A2BHD2 Mus_musculus_Obp1a Mus_musculus_5430402E10Rik Homo_sapiens_C8G Mus_musculus_C8g Homo_sapiens_LCN2 Mus_musculus_Lcn2 Mus_musculus_Lcn12 Homo_sapiens_LCN12 Homo_sapiens_LCN8 Mus_musculus_Lcn8 Homo_sapiens_LCN10 Mus_musculus_Lcn10 Homo_sapiens_LCN6 Mus_musculus_Lcn6 Homo_sapiens_APOM Mus_musculus_Apom Homo_sapiens_ORM1 Homo_sapiens_ORM2 Mus_musculus_Orm1 Mus_musculus_Orm2 Homo_sapiens_APOD Mus_musculus_Apod Homo_sapiens_RBP4 Mus_musculus_Rbp4 Homo_sapiens_CRABP2 Mus_musculus_Crabp2 Mus_musculus_Lcn11 Mus_musculus_Pbsn Homo_sapiens_LCN15 Mus_musculus_Lcn5 Homo_sapiens_PAEP ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=377; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = ?; MATRIX Homo_sapiens_OBP2B -------MKTLFLGVT-LGLAAAL-----------S----FTLEE--EDI Homo_sapiens_OBP2A -------MKTLFLGVT-LGLAAAL-----------S----FTLEE--EDI Homo_sapiens_LCN1 -------MKPLLLAVS-LGLIAAL-----------QAHHLLASDEEIQDV Mus_musculus_Obp2a -------MKSLLLTILLLGLVAVL-----------KAQ--EAPPDDLVDY Mus_musculus_Obp2b -------MKSLLLTILLLGLVAVL-----------KAQ--EAPPDDLEDF Mus_musculus_Lcn4 -------MKSLLLTVTLSSLVATL-----------QTYDDLPFISEEDKL Mus_musculus_Lcn3 --MQTLEMRALLLIIS-FCLVAVL-----------QAQDSSFLAFNNGNF Homo_sapiens_LCN9 -----MALLLLSLGLSL-IAAQEF-----------DPHTVMQRNYNVARV Mus_musculus_Lcn9 ------MVLLLVLGLVLSLATAQF-----------NLHTAVRRDYNLARI Mus_musculus_Mup6 ------MKMLLLLCLGLTLVCVHA-----------EEASSTGRNFNVEKI Mus_musculus_Mup14 --------MLLLLCLGLTLVCVHA-----------EEASSTGRNFNVEKI Mus_musculus_Mup10 ------MKMLLLLCLGLTLVCVHA-----------EEASSTGRNFNVEKI Mus_musculus_Mup13 --------MLLLLCLGLTLVCVHA-----------EEASSTGRNFNVQKI Mus_musculus_Mup8 ------MKMMLLLCLGLTLVCVHA-----------EEASSTGRNFNVEKI Mus_musculus_Gm21320 -----MKMLLLLLCLGLTLVCVHA-----------EEASSTGRNFNVEKI Mus_musculus_Mup11 ------MKMLLLLCLGLTLVCVHA-----------EEASSTGRNFNVEKI Mus_musculus_Mup15 --------MLLLLCLGLTLVCVHA-----------EEASSTGRNFNVEKI Mus_musculus_Mup2 -------------------------------------------------- Mus_musculus_Mup18 ------MKLLLLLCLELTLVYVHA-----------EEASSEGQNLNVEKI Mus_musculus_Mup5 ------MKLLLLLCLELTLVYVHA-----------EEASSEGQNLNVEKI Mus_musculus_Mup4 --------MKLLLCLGLTLVCIHA-----------EEATSKGQNLNVEKI Mus_musculus_Mup1 --------MKLLLCLGLTLVCIHA-----------EEATSKGQNLNVEKI Mus_musculus_Mup20 -----MKLLVLLLCLGLTLVCVHA-----------EEASSMERNFNVEKI Mus_musculus_Mup3 --MKLLLPLLLLLCLELTLVCIHA-----------EESSSMERNFNVEQI Mus_musculus_obp1b -----MMVKFLLLALVFGLAHVHA-----------H---------DHPEL Mus_musculus_A2BHD2 -----MMVKFLLLALVFGLAHVHA-----------H---------DHPEL Mus_musculus_Obp1a ------MAKFLLLALTFGLAHA--------------------------AM Mus_musculus_5430402E10Rik ------MVKFLLIVIALGVSCAHH-----------ESL-----DISPSEV Homo_sapiens_C8G ---MLPPGTATLLTLLLAAGSLGQKPQRPRRPASPISTIQPKANFDAQQF Mus_musculus_C8g ---MLSPGAVLFFTLLLTASSLGQRTRKPIGSTSPISTIQAQVNFSAQKF Homo_sapiens_LCN2 ---MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVPLQQNFQDNQF Mus_musculus_Lcn2 ---MALSVMCLGLALLGVLQSQAQDSTQNLIPAPSLLTVPLQPDFRSDQF Mus_musculus_Lcn12 --MGPWWALWLILTLPQILESQIS---------AMSQGFPQMTSFQSDQF Homo_sapiens_LCN12 --MRLLCGLWLWLSLLKVLQAQTP---------TPLPLPPPMQSFQGNQF Homo_sapiens_LCN8 ----MPGAAEALPTVTVTLVAGAV---------PPASG-----ALTAHCI Mus_musculus_Lcn8 ------MEARLLSNVCGFFLVFLL---------QAESTRV---ELVPEKI Homo_sapiens_LCN10 -MRQGLLVLALVLVLVLVLAAGSL---------VQEWYPRESHALNWNKF Mus_musculus_Lcn10 ------MKLEMALSIALALAVVSW---------TQEFFPKEAQTLNWSKF Homo_sapiens_LCN6 ------MGGLLL-AAFLALVSVPR---------AQAVWLG---RLDPEQL Mus_musculus_Lcn6 ------MKVILLTAALLALVSIPW---------LQAVWLG---RLDPKQL Homo_sapiens_APOM MFHQIWAALLYFYGIILNSIYQCPE-------HSQLTTLGVDGKEFPEVH Mus_musculus_Apom MFHQVWAALLSLYGLLFNSMNQCPE-------HSQLTALGMDDTETPEPH Homo_sapiens_ORM1 ---MALSWVLTVLSLLPLLEAQIPL-------CANLVP-VPITNATLDRI Homo_sapiens_ORM2 ---MALSWVLTVLSLLPLLEAQIPL-------CANLVP-VPIINATLDRI Mus_musculus_Orm1 ---MALHTVLIILSLLPMLEAQNPE-------HANFTIGEPITNETLSWL Mus_musculus_Orm2 ---MALHMILVMVSLLPLLEAQNPE-------HVNITIGDPITNETLSWL Homo_sapiens_APOD -MVMLLLLLSALAGLFGAAEGQAFHLG-------KCPNPPVQENFDVNKY Mus_musculus_Apod -MVTMLMFLATLAGLFTTAKGQNFHLG-------KCPSPPVQENFDVKKY Homo_sapiens_RBP4 -----MNYSKIPAQVDLRR--QTERDC-------RVSSFRVKENFDKARF Mus_musculus_Rbp4 -----MEWVWALVLLAALGGGSAERDC-------RVSSFRVKENFDKARF Homo_sapiens_CRABP2 ----------------------------------------------MPNF Mus_musculus_Crabp2 ----------------------------------------------MPNF Mus_musculus_Lcn11 ------MPRRHSRGMKLLLLLSVG-----------LGLTWALQDFHPEQV Mus_musculus_Pbsn ------MMRVIILLLTLHVLGVSS------------------VMSLKKKI Homo_sapiens_LCN15 -------------------------------------------------- Mus_musculus_Lcn5 ------MESIMLFTLLGLCVGLAAG-----------TEAAVVKDFDVNKF Homo_sapiens_PAEP -------MLCLLLTLGVALVCGVP----------AMDIPQTKQDLELPKL Homo_sapiens_OBP2B TGTWYVKAMVVDK-DFPEDRRPRKVSPVKVTALGGG-KLEATFTFMREDR Homo_sapiens_OBP2A TGTWYVKAMVVDK-DFPEDRRPRKVSPVKVTALGGG-NLEATFTFMREDR Homo_sapiens_LCN1 SGTWYLKAMTVDR-EFPEMN-LESVTPMTLTTLEGG-NLEAKVTMLISGR Mus_musculus_Obp2a SGIWYAKAMVHNG-TLPSHKIPSIVFPVRIIALEEG-DLETTVVFWNNGH Mus_musculus_Obp2b SGIWYTQAMVSDR-NHTDGKRPMKVFPMTVIALEGG-SLEAQLTFWDNGH Mus_musculus_Lcn4 SGVWFIKATVSQR-REVEGE-TLVAFPIKFTCPEEG-TLELRHTLASKGE Mus_musculus_Lcn3 SGKWFLKALVSED-DIPINK----VSPMLILVLNNG-DIELSITHMIYDQ Homo_sapiens_LCN9 SGVWYSIFMASDDLNRIKENGDLRVFVRNIEHLKNG-SLIFDFEYMVQGE Mus_musculus_Lcn9 SGTWYLDSIASDNMTRIEENGDLRLFIRNIKLLNNG-SLQFDFHFMLQGE Mus_musculus_Mup6 NGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEN--SLVLKFHTVRDEE Mus_musculus_Mup14 NGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEN--SLVLKFHTVRDEE Mus_musculus_Mup10 NGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEN--SLVLKFHTVRDEE Mus_musculus_Mup13 NGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEN--SLVLKFHTVRDEE Mus_musculus_Mup8 NGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEK--SLVLKFHTVRDEE Mus_musculus_Gm21320 NGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEK--SLVLKFHTVRDEE Mus_musculus_Mup11 NGEWHTIILASDKREKIEEHGNFRLFLEQIHVLEN--SLVLKVHTVRDEE Mus_musculus_Mup15 NGEWHTIILASDKREKIEEHGNFRLFLEQIHVLEN--SLVLKVHTVRDEE Mus_musculus_Mup2 -------------------------MQKKLVLREG--TLMYKR---RDEE Mus_musculus_Mup18 NGKWFSILLASDKREKIEEHGTMRVFVEHIDVLEN--SLAFKFHTVIDEE Mus_musculus_Mup5 NGKWFSILLASDKREKIEEHGTMRVFVEHIDVLEN--SLAFKFHTVIDEE Mus_musculus_Mup4 NGEWFSILLASDKREKIEEHGSMRVFVEHIHVLEN--SLAFKFHTVIDGE Mus_musculus_Mup1 NGEWFSILLASDKREKIEEHGSMRVFVEHIHVLEN--SLAFKFHTVIDGE Mus_musculus_Mup20 NGEWYTIMLATDKREKIEEHGSMRVFVEYIHVLEN--SLALKFHIIINEE Mus_musculus_Mup3 SGYWFSIAEASDEREKIEEHGSMRAFVENITVLEN--SLVFKFHLIVNEE Mus_musculus_obp1b QGQWKTTAIMADNIDKIETSGPLELFVREITCDEGCQKMKVTFYVKQNGQ Mus_musculus_A2BHD2 QGQWKTTAIMADNIDKIETSGPLELFVREITCDEGCQKMKVTFYVKQNGQ Mus_musculus_Obp1a EGPWKTVAIAADRVDKIERGGELRIYCRSLTCEKECKEMKVTFYVNENGQ Mus_musculus_5430402E10Rik NGDWRTLYIAADKVEKVKMNGDLRAYFEHMECNDDCGTLKVKFHVQMNGK Homo_sapiens_C8G AGTWLLVAVGSACR-FLQEQGHRAEATTLHVAPQGTAMAVS--TFRKLDG Mus_musculus_C8g AGTWLLVAVGSSCR-FLQEQGHRAEATTLHAAPQGAAMAVS--TFRKLDG Homo_sapiens_LCN2 QGKWYVVGLAGNAI-LREDKDPQKMYATIYELKEDKSYNVTSVLFRKKK- Mus_musculus_Lcn2 RGRWYVVGLAGNAV-QKKTEGSFTMYSTIYELQENNSYNVTSILVRDQDQ Mus_musculus_Lcn12 QGEWFVLGLADNTF-RREHRALLNFFTTLFELKEKSQFQVTNSMTRGKH- Homo_sapiens_LCN12 QGEWFVLGLAGNSF-RPEHRALLNAFTATFELSDDGRFEVWNAMTRGQH- Homo_sapiens_LCN8 GGFWREVGVASDQS--LVLTAPKRVEGLFLTLS-GSNLTVKVAYNSSGS- Mus_musculus_Lcn8 AGFWKEVAVASDQK--LVLKAQRRVEGLFLTFS-GGNVTVKAVYNSSGS- Homo_sapiens_LCN10 SGFWYILATATDAQGFLPARDKRKLGASVVKVNKVGQLRVLLAFRRLKG- Mus_musculus_Lcn10 SGFWYIIAIATDTQGFLPARDKRKLGASVVKVHKTGQLRVVIAFSRPRG- Homo_sapiens_LCN6 LGPWYVLAVASREKGFAMEKDMKNVVGVVVTLTPENNLRTLSSQHGLGG- Mus_musculus_Lcn6 LGPWYVLAVASRAKDFMVEKDMKNVEGVVVTLTPDNKLRVESSRHGPGG- Homo_sapiens_APOM LGQWYFIAGAAPTKEELATFDPVDNIVFNMAAGSAPMQLHLRATIRMKDG Mus_musculus_Apom LGLWYFIAGAASTTEELATFDPVDNIVFNMAAGSAPRQLQLRATIRTKSG Homo_sapiens_ORM1 TGKWFYIASAFRNEEYNKSVQEIQATFFYFTPNKTEDTIFLRE-YQTRQD Homo_sapiens_ORM2 TGKWFYIASAFRNEEYNKSVQEIQATFFYFTPNKTEDTIFLRE-YQTRQN Mus_musculus_Orm1 SDKWFFMGAAFRKLEYRQAIQTMQSEFFYLTTNLINDTIELRE-SQTIGD Mus_musculus_Orm2 SDKWFFIGAAVLNPDYRQEIQKTQMVFFNLTPNLINDTMELRE-YHTIDD Homo_sapiens_APOD LGRWY--EIEK-IPTTFENGRCIQANYSLMENGKIKVLNQELRADGTVNQ Mus_musculus_Apod LGRWY--EIEK-IPASFEKGNCIQANYSLMENGNIEVLNKELSPDGTMNQ Homo_sapiens_RBP4 SGTWY--AMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWD Mus_musculus_Rbp4 SGLWY--AIAKKDPEGLFLQDNIIAEFSVDEKGHMSATAKGRVRLLSNWE Homo_sapiens_CRABP2 SGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIK Mus_musculus_Crabp2 SGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIK Mus_musculus_Lcn11 TGPWHTLKLASTDRSLIEEGGAYRCFMTDIVLLDNG-NLNVTYFHRKDGK Mus_musculus_Pbsn DGPWQTIYLAASTMEKINEGSPLRTYFRHILCGRRCNQVYLYFFIKKGTK Homo_sapiens_LCN15 --------MASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHMEFPGADG- Mus_musculus_Lcn5 LGFWYEIALASKMGAYGLAHKEEKMGAMVVELKEN--LLALTTTYYNEGH Homo_sapiens_PAEP AGTWHSMAMATNNISLMATLKAPLRVHITSLLPTPEDNLEIVLHRWENNS Homo_sapiens_OBP2B -CIQKKILMRKTEEPGKYSAYGGRKLM--------YLQELPRRDHYIFYC Homo_sapiens_OBP2A -CIQKKILMRKTEEPGKFSAYGGRKLI--------YLQELPGTDDYVFYC Homo_sapiens_LCN1 -CQEVKAVLEKTDEPGKYTADGGKHVA--------YIIRSHVKDHYIFYC Mus_musculus_Obp2a -CREFKFVMKKTEEPGKYTAFHNTKVI--------HVEKTSVNEHYIFYC Mus_musculus_Obp2b -CHMKKILMHKTDEPHKYTAFKGKKTI--------YIQETSVKGYYILYC Mus_musculus_Lcn4 -CINVGIRLQRTEEPGQYSAFWGHTLF--------YIYDLPVKDHYIIYC Mus_musculus_Lcn3 -CLEVTTILEKTDVPGQYLAFEGKTHL--------QVQLSSVKGHYMLYC Homo_sapiens_LCN9 -CVAVVVVCEKTEKNGEYSINYEGQNT--------VAVSETDYRLFITFH Mus_musculus_Lcn9 -CVAVTMVCEKTKNNGEFSVAYEGKNK--------VLLLETDYSMYIIFY Mus_musculus_Mup6 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup14 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup10 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup13 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup8 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Gm21320 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup11 -CSELSMVADKTEKAGKYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup15 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup2 -CSELSMVADKTEKAGEYSVTYDGFNT--------FTIPKTDYDNFLMAH Mus_musculus_Mup18 -CTEIYLVADKTEKAGEYSVTYDGFNT--------FTILKTDYDNYIMFH Mus_musculus_Mup5 -CTEIYLVADKTEKAGEYSVTYDGFNT--------FTILKTDYDNYIMFH Mus_musculus_Mup4 -CSEIFLVADKTEKAGEYSVMYDGFNT--------FTILKTDYDNYIMFH Mus_musculus_Mup1 -CSEIFLVADKTEKAGEYSVMYDGFNT--------FTILKTDYDNYIMFH Mus_musculus_Mup20 -CSEIFLVADKTEKAGEYSVTYDGSNT--------FTILKTDYDNYIMIH Mus_musculus_Mup3 -CTEMTAIGEQTEKAGIYYMNYDGFNT--------FSILKTDYDNYIMIH Mus_musculus_obp1b -CSLTTVTGYKQEDGKTFKNQYEGENN--------YKLLKATSENLVFYD Mus_musculus_A2BHD2 -CSLTTVTGYKQEDGKTFKNQYEGENN--------YKLLKATSENLVFYD Mus_musculus_Obp1a -CSLTTITGYLQEDGKTYKTQFQGNNR--------YKLVDESPENLTFYS Mus_musculus_5430402E10Rik -CQTHTVVGEKQEDGR-YTTDYSGRNY--------FEVVMKEDGALFFHN Homo_sapiens_C8G ICWQVRQLYGDTGVLGRFLLQARDARG-----AVHVVVAETDYQSFAVLY Mus_musculus_C8g ICWQVRQLFENTGVPGRFLFQVSRARG-----PVHMVVAETDYQSFAILY Homo_sapiens_LCN2 -CDYWIRTFVPGCQPGEFTLGNIKSYPGLT--SYLVRVVSTNYNQHAMVF Mus_musculus_Lcn2 GCRYWIRTFVPSSRAGQFTLGNMHRYPQVQ--SYNVQVATTDYNQFAMVF Mus_musculus_Lcn12 -CNTWSYTLIPATKPGQFTRDNRGSGPGAD--RENIQVIETDYITFALVL Homo_sapiens_LCN12 -CDTWSYVLIPAAQPGQFTVDH-GVEPGAD--REETRVVDSDYTQFALML Homo_sapiens_LCN8 -CEIEKIVGSEIDSTGKFAFP--GHRE--------IHVLDTDYEGYAILR Mus_musculus_Lcn8 -CVTESSLGSERDTVGEFAFP--GNRE--------IHVLDTDYERYTILK Homo_sapiens_LCN10 -CQSQEVILRKDGKKPVFGN-------------------ACSY-AAG--- Mus_musculus_Lcn10 -CQSREVTLKKDRKRPVFRNTLKGVKG--------FHVLSTDY-TYGLVY Homo_sapiens_LCN6 -CDQSVMDLIKRNSGWVFENPSIGVLE--------LWVLATNFRDYAIIF Mus_musculus_Lcn6 -CHQSTVELLKQESRWVFENPSLGILD--------YRVLGTNFKDYAVVF Homo_sapiens_APOM LCVPRKWIYHLTEG--STDLRTEGRPD---------MKTELFSSSCPGGI Mus_musculus_Apom VCVPRKWTYRLTEGKGNMELRTEGRPD---------MKTDLFSSSCPGGI Homo_sapiens_ORM1 QCIYNTTYLNVQRENGTISRYVGGQEH---------FAHLLILRDTKTYM Homo_sapiens_ORM2 QCFYNSSYLNVQRENGTVSRYEGGREH---------VAHLLFLRDTKTLM Mus_musculus_Orm1 QCVYNSTHLGFQRENGTFSKYEGGVET---------FAHLIVLRKHGAFM Mus_musculus_Orm2 HCVYNSTHLGIQRENGTLSKYVGGVKI---------FADLIVLKMHGAFM Homo_sapiens_APOD IEGEAT--PVNLTEPAKLEVKFSWFMPSAP-----YWILATDYENYALVY Mus_musculus_Apod VKGEAK--QSNVSEPAKLEVQFFPLMPPAP-----YWILATDYENYALVY Homo_sapiens_RBP4 VCADMVGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQY Mus_musculus_Rbp4 VCADMVGTFTDTEDPAKFKMKYWGVASFLQRGNDDHWIIDTDYDTFALQY Homo_sapiens_CRABP2 TSTTVRTTEINFKVGEEFEEQTVDGRP--------CKSLVKWESENKMVC Mus_musculus_Crabp2 TSTTVRTTEINFKIGEEFEEQTVDGRP--------CKSLVKWESGNKMVC Mus_musculus_Lcn11 -CVKEFYIAEKTDTPGQYTFEYQGRNS---------LTFVHVTEDFAIMD Mus_musculus_Pbsn -CQLYKVIGRKKQE--VYYAQYEGSIA--------FMLKMVNEKILLFHY Homo_sapiens_LCN15 -CNQVDAEYLKVGSEGHFRVPALGYLD--------VRIVDTDYSSFAVLY Mus_musculus_Lcn5 -CVLEKVAATQVDGSAKYKVTRISGEK-------EVVVVATDYMTYTVID Homo_sapiens_PAEP -CVEKKVLGEKTENPKKFKINYTVANE--------ATLLDTDYDNFLFLC Homo_sapiens_OBP2B KDQHHGG----LLHMGKLVGRNSDTN-REALEEFKKLVQRKGLSEEDIFT Homo_sapiens_OBP2A KDQRRGG----LRYMGKLVGRNPNTN-LEALEEFKKLVQHKGLSEEDIFM Homo_sapiens_LCN1 EGELHGK----PVRGVKLVGRDPKNN-LEALEDFEKAAGARGLSTESILI Mus_musculus_Obp2a EGRHNGTS---SFGMGKLMGRDSGEN-PEAMEEFKNFIKRMNLRLENMFV Mus_musculus_Obp2b EGQRHGR----SHRKGKLIGTNSEKN-PEAMEEFKKFAMSKGFREENIIV Mus_musculus_Lcn4 ESHPFQK----ISQFGYLIGKYPEEN-QDTLEVFKEFIQHKGFLQEKIGV Mus_musculus_Lcn3 DGEIEGM----RFLMTQLIGRDPQEN-LEALEEFKVFTQIKGLVAENLVI Homo_sapiens_LCN9 LQNFRNGT---ETHTLALY----------------ETCEKYGLGSQNIID Mus_musculus_Lcn9 MQNIKNGT---KTQVLALYGRSILLD-KTHQREFENICNLYGLDSQNIID Mus_musculus_Mup6 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEEHGILRENIID Mus_musculus_Mup14 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEEHGILRENIID Mus_musculus_Mup10 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEKHGILRENIID Mus_musculus_Mup13 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEKHGILRENIID Mus_musculus_Mup8 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEEHGILRENIID Mus_musculus_Gm21320 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEEHGILRENIID Mus_musculus_Mup11 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEEHGILRENIID Mus_musculus_Mup15 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEEHGILRENIID Mus_musculus_Mup2 LINEKDGE---TFQLMGLYGREPDLS-SDIKERFAQLCEEHGILRENIID Mus_musculus_Mup18 LINKKDEE---NFQLMELFGREPDLS-SDIKEKFAKLCEEHGIVRENIID Mus_musculus_Mup5 LINKKDEE---NFQLMELFGREPDLS-SDIKEKFAKLCEEHGIVRENIID Mus_musculus_Mup4 LINEKDGK---TFQLMELYGRKADLN-SDIKEKFVKLCEEHGIIKENIID Mus_musculus_Mup1 LINEKDGK---TFQLMELYGRKADLN-SDIKEKFVKLCEEHGIIKENIID Mus_musculus_Mup20 LINKKDGE---TFQLMELYGREPDLS-SDIKEKFAQLSEEHGIVRENIID Mus_musculus_Mup3 LINKKDGK---TFQLMELYGREPDLS-LDIKEKFAKLCEEHGIIRENIID Mus_musculus_obp1b ENVDRASR---KTKLLYILGKGEALT-HEQKERLTELATQKGIPAGNLRE Mus_musculus_A2BHD2 ENVDRASR---KTKLLYILGKGEALT-HEQKERLTELATQKGIPAGNLKE Mus_musculus_Obp1a ENVDRADR---KTKLLFILGHG-PLT-SEQKEKFAELAEEKGIPAGNIRE Mus_musculus_5430402E10Rik VNVDESGQ---ETNVILVAGKGETLS-KAQKQELGKLVKEYNIPKENIQH Homo_sapiens_C8G LERAGQ-------LSVKLYARSLPVS-DSVLSGFEQRVQEAHLTEDQIFY Mus_musculus_C8g LEQGRK-------LSVKLYVRSLPVN-DSVLDVFERRVREANLTEDQILF Homo_sapiens_LCN2 FKKVSQNR---EYFKITLYGRTKELT-SELKENFIRFSKSLGLPENHIVF Mus_musculus_Lcn2 FRKTSENK---QYFKITLYGRTKELS-PELKERFTRFAKSLGLKDDNIIF Mus_musculus_Lcn12 SLRQTSSQ---NITRVSLLGRNWRLS-HKTIDKFICLTRTQNLTKDNFLF Homo_sapiens_LCN12 SRRHTSRL---AVLRISLLGRSWLLP-PGTLDQFICLGRAQGLSDDNIVF Homo_sapiens_LCN8 VSLMWRGR---NFRVLKYFTRSLEDKDRLGFWKFRELTADTGLYLAARPG Mus_musculus_Lcn8 LTLLWQGR---NFHVLKYFTRSLENEDEPGFWLFREMTADQGLYMLARHG Homo_sapiens_LCN10 PREGQEG------------DRQNVSS-FQSLKEFMDACDILGLSKAAVIL Mus_musculus_Lcn10 LRLGRGGS---NYKSLLLFNRQNISS-FLSLREFLDTCHILQLTKQATIL Homo_sapiens_LCN6 TQLEFGDE---PFNTVELYSLTETAS-QEAMGLFTKWSRSLGFLSQ---- Mus_musculus_Lcn6 TQLEFGDE---VFNTVSLYSRTEMAS-HEAMQLFTKWSQGLGFLSQQQAQ Homo_sapiens_APOM MLNETGQG---YQR-FLLYNRSPHPP-EKCVEEFKSLTS--CLDSKAFLL Mus_musculus_Apom MLKETGQG---YQR-FLLYNRSPHPP-EKCVEEFQSLTS--CLDFKAFLV Homo_sapiens_ORM1 LAFDVNDE---KNWGLSVYADKPETT-KEQLGEFYEALDCLCIPRSDVMY Homo_sapiens_ORM2 FGSYLDDE---KNWGLSFYADKPETT-KEQLGEFYEALDCLCIPRSDVMY Mus_musculus_Orm1 LAFDLKDE---KKRGLSLYAKRPDIT-PELQEVFQKAVTHVGMDESEIIF Mus_musculus_Orm2 LAFDLKDE---KKRGLSLNAKRPDIT-PELREVFQKAVTHVGMDESEIIF Homo_sapiens_APOD SC--TCIIQLFHVDFAWILARNPN-LPPETVDSLKNILTSNNIDVKKMTV Mus_musculus_Apod SC--TTFFWLFHVDFVWILGRNPY-LPPETITYLKDILTSNGIDIEKMTT Homo_sapiens_RBP4 SCRLLNLDGTCADSYSFVFSRDPNGLPPEAQKIVRQRQEELCLARQYRLI Mus_musculus_Rbp4 SCRLQNLDGTCADSYSFVFSRDPNGLSPETRRLVRQRQEELCLERQYRWI Homo_sapiens_CRABP2 EQKLLKGE-----GPKTSWTRELTND-----GELILTMTADDVVCTRVYV Mus_musculus_Crabp2 EQRLLKGE-----GPKTSWSRELTND-----GELILTMTADDVVCTRVYV Mus_musculus_Lcn11 LENQSEGG---TTIVIEFHGRSLSTD-ELGWERYLVHTRRRGIAPENIVD Mus_musculus_Pbsn FNKNRRND---VTRVAGVLAKGKQLN-KEEMTEFMNLVEEMGIEEENVQR Homo_sapiens_LCN15 IYKELEGA---LSTMVQLYSRTQDVS-PQALKAFQDFYPTLGLPEDMMVM Mus_musculus_Lcn5 ITSLVAGA---VHRAMKLYSRSLDNN-GEALNNFQKIALKHGFSETDIHI Homo_sapiens_PAEP LQDTTTPI---QSMMCQYLARVLVED-DEIMQGFIRAFRPLPRHLWYLLD Homo_sapiens_OBP2B PL-QTGSCVPEH-------------------------------------- Homo_sapiens_OBP2A PL-QTGSCVLEH-------------------------------------- Homo_sapiens_LCN1 PR-QSETCSPGSD------------------------------------- Mus_musculus_Obp2a PE-IGDKCVESD-------------------------------------- Mus_musculus_Obp2b PE-QLDQCVSGSN------------------------------------- Mus_musculus_Lcn4 PE-QRDRCIPIHDSAHQDHKC----------------------------- Mus_musculus_Lcn3 LE-QMEKCEPESFYELPSRPSE---------------------------- Homo_sapiens_LCN9 LT-NKDPCYSKHYRSPPRPPMRW--------------------------- Mus_musculus_Lcn9 MT-KKDFCFL---------------------------------------- Mus_musculus_Mup6 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup14 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup10 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup13 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup8 LS-NANRCLQARE------------------------------------- Mus_musculus_Gm21320 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup11 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup15 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup2 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup18 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup5 LS-NANRCLQARE------------------------------------- Mus_musculus_Mup4 LT-KTNRCLKARE------------------------------------- Mus_musculus_Mup1 LT-KTNRCLKARE------------------------------------- Mus_musculus_Mup20 LT-NANRCLEARE------------------------------------- Mus_musculus_Mup3 LT-NVNRCLEARE------------------------------------- Mus_musculus_obp1b LA-HEDTCPE---------------------------------------- Mus_musculus_A2BHD2 LA-HEDTCPE---------------------------------------- Mus_musculus_Obp1a VL-ITDYCPE---------------------------------------- Mus_musculus_5430402E10Rik LA-PTDTCNQ---------------------------------------- Homo_sapiens_C8G FP-KYGFCEAADQFHVLDEVRR---------------------------- Mus_musculus_C8g FP-KYGFCETADQLHILNEVPR---------------------------- Homo_sapiens_LCN2 PV-PIDQCIDG--------------------------------------- Mus_musculus_Lcn2 SV-PTDQCIDN--------------------------------------- Mus_musculus_Lcn12 PD-LSDWLPDPQVC------------------------------------ Homo_sapiens_LCN12 PD-VTGNMVHLQACWAVGTGPAGMSLVDPRGAGPSVYPGSSAPACAQGSP Homo_sapiens_LCN8 RC-AELLKEELI-------------------------------------- Mus_musculus_Lcn8 RC-AELLKEGLV-------------------------------------- Homo_sapiens_LCN10 PK-DASRTHTILP------------------------------------- Mus_musculus_Lcn10 PK-DDSCAHTILP------------------------------------- Homo_sapiens_LCN6 -------------------------------------------------- Mus_musculus_Lcn6 LQ-KDLSSTEACGWDPGNCYSPILTTGSLLLQSLVHTRSSSECHTLDIAP Homo_sapiens_APOM TPRNQEACELSNN------------------------------------- Mus_musculus_Apom TPRNQEACPLSSK------------------------------------- Homo_sapiens_ORM1 TDWKKDKCEPLEKQH---EKERKQ--EEGES------------------- Homo_sapiens_ORM2 TDWKKDKCEPLEKQH---EKERKQ--EEGES------------------- Mus_musculus_Orm1 VDWKKDRCGQQEKKQLELGKETKKDPEEGQA------------------- Mus_musculus_Orm2 VDWKKDRCSQQEKQQLELEKETKKDPEEGQA------------------- Homo_sapiens_APOD TD--QVNCPKLS-------------------------------------- Mus_musculus_Apod TD--QANCPDFL-------------------------------------- Homo_sapiens_RBP4 VH--NGYCDGRSERNLL--------------------------------- Mus_musculus_Rbp4 EH--NGYCQSRPSRNSL--------------------------------- Homo_sapiens_CRABP2 RE------------------------------------------------ Mus_musculus_Crabp2 RE------------------------------------------------ Mus_musculus_Lcn11 LS-LSRRCDTH--------------------------------------- Mus_musculus_Pbsn IM-DTDNCPSKIKP------------------------------------ Homo_sapiens_LCN15 LP-QSDACNPESKEAP---------------------------------- Mus_musculus_Lcn5 LK-HDLTCVNALQLGQI--------------------------------- Homo_sapiens_PAEP LKQMEEPCRF---------------------------------------- Homo_sapiens_OBP2B -------------------------------------------------- Homo_sapiens_OBP2A -------------------------------------------------- Homo_sapiens_LCN1 -------------------------------------------------- Mus_musculus_Obp2a -------------------------------------------------- Mus_musculus_Obp2b -------------------------------------------------- Mus_musculus_Lcn4 -------------------------------------------------- Mus_musculus_Lcn3 -------------------------------------------------- Homo_sapiens_LCN9 -------------------------------------------------- Mus_musculus_Lcn9 -------------------------------------------------- Mus_musculus_Mup6 -------------------------------------------------- Mus_musculus_Mup14 -------------------------------------------------- Mus_musculus_Mup10 -------------------------------------------------- Mus_musculus_Mup13 -------------------------------------------------- Mus_musculus_Mup8 -------------------------------------------------- Mus_musculus_Gm21320 -------------------------------------------------- Mus_musculus_Mup11 -------------------------------------------------- Mus_musculus_Mup15 -------------------------------------------------- Mus_musculus_Mup2 -------------------------------------------------- Mus_musculus_Mup18 -------------------------------------------------- Mus_musculus_Mup5 -------------------------------------------------- Mus_musculus_Mup4 -------------------------------------------------- Mus_musculus_Mup1 -------------------------------------------------- Mus_musculus_Mup20 -------------------------------------------------- Mus_musculus_Mup3 -------------------------------------------------- Mus_musculus_obp1b -------------------------------------------------- Mus_musculus_A2BHD2 -------------------------------------------------- Mus_musculus_Obp1a -------------------------------------------------- Mus_musculus_5430402E10Rik -------------------------------------------------- Homo_sapiens_C8G -------------------------------------------------- Mus_musculus_C8g -------------------------------------------------- Homo_sapiens_LCN2 -------------------------------------------------- Mus_musculus_Lcn2 -------------------------------------------------- Mus_musculus_Lcn12 -------------------------------------------------- Homo_sapiens_LCN12 GSWVPVLNPGSEPPPAAPGPLSWATSSHPGSPVPGHLLPPQVPCPGPPPP Homo_sapiens_LCN8 -------------------------------------------------- Mus_musculus_Lcn8 -------------------------------------------------- Homo_sapiens_LCN10 -------------------------------------------------- Mus_musculus_Lcn10 -------------------------------------------------- Homo_sapiens_LCN6 -------------------------------------------------- Mus_musculus_Lcn6 QHPGILVEVGRHGLCTVAGGTGADWLLS---------------------- Homo_sapiens_APOM -------------------------------------------------- Mus_musculus_Apom -------------------------------------------------- Homo_sapiens_ORM1 -------------------------------------------------- Homo_sapiens_ORM2 -------------------------------------------------- Mus_musculus_Orm1 -------------------------------------------------- Mus_musculus_Orm2 -------------------------------------------------- Homo_sapiens_APOD -------------------------------------------------- Mus_musculus_Apod -------------------------------------------------- Homo_sapiens_RBP4 -------------------------------------------------- Mus_musculus_Rbp4 -------------------------------------------------- Homo_sapiens_CRABP2 -------------------------------------------------- Mus_musculus_Crabp2 -------------------------------------------------- Mus_musculus_Lcn11 -------------------------------------------------- Mus_musculus_Pbsn -------------------------------------------------- Homo_sapiens_LCN15 -------------------------------------------------- Mus_musculus_Lcn5 -------------------------------------------------- Homo_sapiens_PAEP -------------------------------------------------- Homo_sapiens_OBP2B -------------------------------------------------- Homo_sapiens_OBP2A -------------------------------------------------- Homo_sapiens_LCN1 -------------------------------------------------- Mus_musculus_Obp2a -------------------------------------------------- Mus_musculus_Obp2b -------------------------------------------------- Mus_musculus_Lcn4 -------------------------------------------------- Mus_musculus_Lcn3 -------------------------------------------------- Homo_sapiens_LCN9 -------------------------------------------------- Mus_musculus_Lcn9 -------------------------------------------------- Mus_musculus_Mup6 -------------------------------------------------- Mus_musculus_Mup14 -------------------------------------------------- Mus_musculus_Mup10 -------------------------------------------------- Mus_musculus_Mup13 -------------------------------------------------- Mus_musculus_Mup8 -------------------------------------------------- Mus_musculus_Gm21320 -------------------------------------------------- Mus_musculus_Mup11 -------------------------------------------------- Mus_musculus_Mup15 -------------------------------------------------- Mus_musculus_Mup2 -------------------------------------------------- Mus_musculus_Mup18 -------------------------------------------------- Mus_musculus_Mup5 -------------------------------------------------- Mus_musculus_Mup4 -------------------------------------------------- Mus_musculus_Mup1 -------------------------------------------------- Mus_musculus_Mup20 -------------------------------------------------- Mus_musculus_Mup3 -------------------------------------------------- Mus_musculus_obp1b -------------------------------------------------- Mus_musculus_A2BHD2 -------------------------------------------------- Mus_musculus_Obp1a -------------------------------------------------- Mus_musculus_5430402E10Rik -------------------------------------------------- Homo_sapiens_C8G -------------------------------------------------- Mus_musculus_C8g -------------------------------------------------- Homo_sapiens_LCN2 -------------------------------------------------- Mus_musculus_Lcn2 -------------------------------------------------- Mus_musculus_Lcn12 -------------------------------------------------- Homo_sapiens_LCN12 APPAPGPLSRPTSSHPGSPVLGYLLPPQVPCPGPSPPSGSPVLGHLLPSP Homo_sapiens_LCN8 -------------------------------------------------- Mus_musculus_Lcn8 -------------------------------------------------- Homo_sapiens_LCN10 -------------------------------------------------- Mus_musculus_Lcn10 -------------------------------------------------- Homo_sapiens_LCN6 -------------------------------------------------- Mus_musculus_Lcn6 -------------------------------------------------- Homo_sapiens_APOM -------------------------------------------------- Mus_musculus_Apom -------------------------------------------------- Homo_sapiens_ORM1 -------------------------------------------------- Homo_sapiens_ORM2 -------------------------------------------------- Mus_musculus_Orm1 -------------------------------------------------- Mus_musculus_Orm2 -------------------------------------------------- Homo_sapiens_APOD -------------------------------------------------- Mus_musculus_Apod -------------------------------------------------- Homo_sapiens_RBP4 -------------------------------------------------- Mus_musculus_Rbp4 -------------------------------------------------- Homo_sapiens_CRABP2 -------------------------------------------------- Mus_musculus_Crabp2 -------------------------------------------------- Mus_musculus_Lcn11 -------------------------------------------------- Mus_musculus_Pbsn -------------------------------------------------- Homo_sapiens_LCN15 -------------------------------------------------- Mus_musculus_Lcn5 -------------------------------------------------- Homo_sapiens_PAEP -------------------------------------------------- Homo_sapiens_OBP2B --------------------------- Homo_sapiens_OBP2A --------------------------- Homo_sapiens_LCN1 --------------------------- Mus_musculus_Obp2a --------------------------- Mus_musculus_Obp2b --------------------------- Mus_musculus_Lcn4 --------------------------- Mus_musculus_Lcn3 --------------------------- Homo_sapiens_LCN9 --------------------------- Mus_musculus_Lcn9 --------------------------- Mus_musculus_Mup6 --------------------------- Mus_musculus_Mup14 --------------------------- Mus_musculus_Mup10 --------------------------- Mus_musculus_Mup13 --------------------------- Mus_musculus_Mup8 --------------------------- Mus_musculus_Gm21320 --------------------------- Mus_musculus_Mup11 --------------------------- Mus_musculus_Mup15 --------------------------- Mus_musculus_Mup2 --------------------------- Mus_musculus_Mup18 --------------------------- Mus_musculus_Mup5 --------------------------- Mus_musculus_Mup4 --------------------------- Mus_musculus_Mup1 --------------------------- Mus_musculus_Mup20 --------------------------- Mus_musculus_Mup3 --------------------------- Mus_musculus_obp1b --------------------------- Mus_musculus_A2BHD2 --------------------------- Mus_musculus_Obp1a --------------------------- Mus_musculus_5430402E10Rik --------------------------- Homo_sapiens_C8G --------------------------- Mus_musculus_C8g --------------------------- Homo_sapiens_LCN2 --------------------------- Mus_musculus_Lcn2 --------------------------- Mus_musculus_Lcn12 --------------------------- Homo_sapiens_LCN12 IPAHKELGLIPGGALDLSSLPWVAAPA Homo_sapiens_LCN8 --------------------------- Mus_musculus_Lcn8 --------------------------- Homo_sapiens_LCN10 --------------------------- Mus_musculus_Lcn10 --------------------------- Homo_sapiens_LCN6 --------------------------- Mus_musculus_Lcn6 --------------------------- Homo_sapiens_APOM --------------------------- Mus_musculus_Apom --------------------------- Homo_sapiens_ORM1 --------------------------- Homo_sapiens_ORM2 --------------------------- Mus_musculus_Orm1 --------------------------- Mus_musculus_Orm2 --------------------------- Homo_sapiens_APOD --------------------------- Mus_musculus_Apod --------------------------- Homo_sapiens_RBP4 --------------------------- Mus_musculus_Rbp4 --------------------------- Homo_sapiens_CRABP2 --------------------------- Mus_musculus_Crabp2 --------------------------- Mus_musculus_Lcn11 --------------------------- Mus_musculus_Pbsn --------------------------- Homo_sapiens_LCN15 --------------------------- Mus_musculus_Lcn5 --------------------------- Homo_sapiens_PAEP --------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 377; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 377; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 377; END; BEGIN NOTES; SUT TAXON = 1 NAME = color INTEGER = 14; SUT TAXON = 2 NAME = color INTEGER = 14; SUT TAXON = 3 NAME = color INTEGER = 14; SUT TAXON = 4 NAME = color INTEGER = 5; SUT TAXON = 5 NAME = color INTEGER = 5; SUT TAXON = 6 NAME = color INTEGER = 5; SUT TAXON = 7 NAME = color INTEGER = 5; SUT TAXON = 8 NAME = color INTEGER = 14; SUT TAXON = 9 NAME = color INTEGER = 5; SUT TAXON = 10 NAME = color INTEGER = 5; SUT TAXON = 11 NAME = color INTEGER = 5; SUT TAXON = 12 NAME = color INTEGER = 5; SUT TAXON = 13 NAME = color INTEGER = 5; SUT TAXON = 14 NAME = color INTEGER = 5; SUT TAXON = 15 NAME = color INTEGER = 5; SUT TAXON = 16 NAME = color INTEGER = 5; SUT TAXON = 17 NAME = color INTEGER = 5; SUT TAXON = 18 NAME = color INTEGER = 5; SUT TAXON = 19 NAME = color INTEGER = 5; SUT TAXON = 20 NAME = color INTEGER = 5; SUT TAXON = 21 NAME = color INTEGER = 5; SUT TAXON = 22 NAME = color INTEGER = 5; SUT TAXON = 23 NAME = color INTEGER = 5; SUT TAXON = 24 NAME = color INTEGER = 5; SUT TAXON = 25 NAME = color INTEGER = 5; SUT TAXON = 26 NAME = color INTEGER = 5; SUT TAXON = 27 NAME = color INTEGER = 5; SUT TAXON = 28 NAME = color INTEGER = 5; SUT TAXON = 29 NAME = color INTEGER = 14; SUT TAXON = 30 NAME = color INTEGER = 5; SUT TAXON = 31 NAME = color INTEGER = 14; SUT TAXON = 32 NAME = color INTEGER = 5; SUT TAXON = 33 NAME = color INTEGER = 5; SUT TAXON = 34 NAME = color INTEGER = 14; SUT TAXON = 35 NAME = color INTEGER = 14; SUT TAXON = 36 NAME = color INTEGER = 5; SUT TAXON = 37 NAME = color INTEGER = 14; SUT TAXON = 38 NAME = color INTEGER = 5; SUT TAXON = 39 NAME = color INTEGER = 14; SUT TAXON = 40 NAME = color INTEGER = 5; SUT TAXON = 41 NAME = color INTEGER = 14; SUT TAXON = 42 NAME = color INTEGER = 5; SUT TAXON = 43 NAME = color INTEGER = 14; SUT TAXON = 44 NAME = color INTEGER = 14; SUT TAXON = 45 NAME = color INTEGER = 5; SUT TAXON = 46 NAME = color INTEGER = 5; SUT TAXON = 47 NAME = color INTEGER = 14; SUT TAXON = 48 NAME = color INTEGER = 5; SUT TAXON = 49 NAME = color INTEGER = 14; SUT TAXON = 50 NAME = color INTEGER = 5; SUT TAXON = 51 NAME = color INTEGER = 14; SUT TAXON = 52 NAME = color INTEGER = 5; SUT TAXON = 53 NAME = color INTEGER = 5; SUT TAXON = 54 NAME = color INTEGER = 5; SUT TAXON = 55 NAME = color INTEGER = 14; SUT TAXON = 56 NAME = color INTEGER = 5; SUT TAXON = 57 NAME = color INTEGER = 14; END; BEGIN TREES; Title lipocalins_tree; ID 0155fe45051b1; LINK Taxa = Taxa; TRANSLATE [0] 1 Homo_sapiens_OBP2B, [1] 2 Homo_sapiens_OBP2A, [2] 3 Homo_sapiens_LCN1, [3] 4 Mus_musculus_Obp2a, [4] 5 Mus_musculus_Obp2b, [5] 6 Mus_musculus_Lcn4, [6] 7 Mus_musculus_Lcn3, [7] 8 Homo_sapiens_LCN9, [8] 9 Mus_musculus_Lcn9, [9] 10 Mus_musculus_Mup6, [10] 11 Mus_musculus_Mup14, [11] 12 Mus_musculus_Mup10, [12] 13 Mus_musculus_Mup13, [13] 14 Mus_musculus_Mup8, [14] 15 Mus_musculus_Gm21320, [15] 16 Mus_musculus_Mup11, [16] 17 Mus_musculus_Mup15, [17] 18 Mus_musculus_Mup2, [18] 19 Mus_musculus_Mup18, [19] 20 Mus_musculus_Mup5, [20] 21 Mus_musculus_Mup4, [21] 22 Mus_musculus_Mup1, [22] 23 Mus_musculus_Mup20, [23] 24 Mus_musculus_Mup3, [24] 25 Mus_musculus_obp1b, [25] 26 Mus_musculus_A2BHD2, [26] 27 Mus_musculus_Obp1a, [27] 28 Mus_musculus_5430402E10Rik, [28] 29 Homo_sapiens_C8G, [29] 30 Mus_musculus_C8g, [30] 31 Homo_sapiens_LCN2, [31] 32 Mus_musculus_Lcn2, [32] 33 Mus_musculus_Lcn12, [33] 34 Homo_sapiens_LCN12, [34] 35 Homo_sapiens_LCN8, [35] 36 Mus_musculus_Lcn8, [36] 37 Homo_sapiens_LCN10, [37] 38 Mus_musculus_Lcn10, [38] 39 Homo_sapiens_LCN6, [39] 40 Mus_musculus_Lcn6, [40] 41 Homo_sapiens_APOM, [41] 42 Mus_musculus_Apom, [42] 43 Homo_sapiens_ORM1, [43] 44 Homo_sapiens_ORM2, [44] 45 Mus_musculus_Orm1, [45] 46 Mus_musculus_Orm2, [46] 47 Homo_sapiens_APOD, [47] 48 Mus_musculus_Apod, [48] 49 Homo_sapiens_RBP4, [49] 50 Mus_musculus_Rbp4, [50] 51 Homo_sapiens_CRABP2, [51] 52 Mus_musculus_Crabp2, [52] 53 Mus_musculus_Lcn11, [53] 54 Mus_musculus_Pbsn, [54] 55 Homo_sapiens_LCN15, [55] 56 Mus_musculus_Lcn5, [56] 57 Homo_sapiens_PAEP; TREE tree_1 = (((43:8.83333333,44:9.16666667)1.0000:43.08405671,(45:19.41346154,46:20.58653846)1.0000:31.91594329)1.0000:14.062845865,((6:60.57874178,(7:53.63820685,((4:37.39908854,5:35.60091146)0.9980:14.49307528,(3:47.27411685,(1:8.41326531,2:8.58673469)1.0000:35.22588315)0.5920:1.63192472)0.4580:2.17429315)0.5920:2.98375822)1.0000:11.96024577,(((54:60.53777398,(28:55.64924316,(27:26.25453404,(25:0.49056604,26:0.50943396)1.0000:31.74546596)1.0000:20.10075684)0.7620:4.71222602)0.9860:8.39951671,(53:68.1274632,((8:29.67582031,9:37.32417969)1.0000:20.0548172,(18:-4.51911809,(24:25.5390625,((23:16.44002016,((19:0.0,20:0.0)1.0000:15.11816406,(21:0.0,22:0.0)1.0000:13.88183594)0.6700:2.05997984)0.6420:2.28229167,((16:1.12162162,17:-0.12162162)0.9040:2.08238636,(13:1.30330882,(15:2.03571429,(14:1.59722222,(11:-0.38157895,(10:0.34615385,12:0.65384615)0.5020:0.38157895)0.2340:0.40277778)0.2140:0.46428571)0.2240:0.32169118)0.7320:1.23011364)1.0000:16.07708333)0.8740:5.75)0.9880:11.78474309)1.0000:20.64733124)0.9400:4.33493914)0.7260:2.65364491)0.4200:2.0554657,((57:72.39605713,((47:27.48369565,48:25.51630435)1.0000:41.89174805,(49:19.27,50:20.73)1.0000:54.35825195)0.4220:2.22894287)0.1360:0.93544388,(((41:17.18137255,42:17.81862745)1.0000:55.02522786,(51:4.45744681,52:4.54255319)1.0000:39.47477214)0.5980:3.9603157,((35:32.68181818,36:33.31818182)1.0000:35.31056595,((56:68.91177877,((37:20.44186047,38:38.55813953)1.0000:30.31394606,(39:14.10555556,40:29.89444444)1.0000:40.18605394)0.4160:2.33822123)0.1980:1.12615967,((55:34.20061849,(29:26.53645833,30:26.46354167)1.0000:38.79938151)0.7340:5.02250017,((31:37.21428571,32:37.78571429)1.0000:26.25574449,(33:0.0,34:0.0)1.0000:66.24425551)0.9900:10.22749983)0.1760:1.57696533)0.0540:0.93162155)0.1360:1.3912468)0.0100:0.47080612)0.1360:1.70457077)0.1360:1.42466736)0.3280:14.062845865)[% ] [% ] [% setBetweenBits = selected ]; TREE 'Fig3_lipocalins' = (((43:8.83333333,44:9.16666667)1.0000:43.08405671,(45:19.41346154,46:20.58653846)1.0000:31.91594329)1.0000:14.062845865,((6:60.57874178,(7:53.63820685,((4:37.39908854,5:35.60091146)0.9980:14.49307528,(3:47.27411685,(1:8.41326531,2:8.58673469)1.0000:35.22588315)0.5920:1.63192472)0.4580:2.17429315)0.5920:2.98375822)1.0000:11.96024577,(((54:60.53777398,(28:55.64924316,(27:26.25453404,(25:0.49056604,26:0.50943396)1.0000:31.74546596)1.0000:20.10075684)0.7620:4.71222602)0.9860:8.39951671,(53:68.1274632,((8:29.67582031,9:37.32417969)1.0000:20.0548172,(18:-4.51911809,(24:25.5390625,((23:16.44002016,((19:0.0,20:0.0)1.0000:15.11816406,(21:0.0,22:0.0)1.0000:13.88183594)0.6700:2.05997984)0.6420:2.28229167,((16:1.12162162,17:-0.12162162)0.9040:2.08238636,(13:1.30330882,(15:2.03571429,(14:1.59722222,(11:-0.38157895,(10:0.34615385,12:0.65384615)0.5020:0.38157895)0.2340:0.40277778)0.2140:0.46428571)0.2240:0.32169118)0.7320:1.23011364)1.0000:16.07708333)0.8740:5.75)0.9880:11.78474309)1.0000:20.64733124)0.9400:4.33493914)0.7260:2.65364491)0.4200:2.0554657,((57:72.39605713,((47:27.48369565,48:25.51630435)1.0000:41.89174805,(49:19.27,50:20.73)1.0000:54.35825195)0.4220:2.22894287)0.1360:0.93544388,(((41:17.18137255,42:17.81862745)1.0000:55.02522786,(51:4.45744681,52:4.54255319)1.0000:39.47477214)0.5980:3.9603157,((35:32.68181818,36:33.31818182)1.0000:35.31056595,((56:68.91177877,((37:20.44186047,38:38.55813953)1.0000:30.31394606,(39:14.10555556,40:29.89444444)1.0000:40.18605394)0.4160:2.33822123)0.1980:1.12615967,((55:34.20061849,(29:26.53645833,30:26.46354167)1.0000:38.79938151)0.7340:5.02250017,((31:37.21428571,32:37.78571429)1.0000:26.25574449,(33:0.0,34:0.0)1.0000:66.24425551)0.9900:10.22749983)0.1760:1.57696533)0.0540:0.93162155)0.1360:1.3912468)0.0100:0.47080612)0.1360:1.70457077)0.1360:1.42466736)0.3280:14.062845865); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getProject; tell It; setName 'The human olfactory transcriptome- Fig 3'; endTell; timeSaved 1468925997924; linkFile 'fig3_tree.nex'; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1584480538833205023; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1192396388409641781; mqVersion 310; checksumv 0 3 3673475899 null getNumChars 377 numChars 377 getNumTaxa 57 numTaxa 57 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.15054733882075E14 sumSquares 1.15054733882075E14 longCompressibleToShort false usingShortMatrix false NumFiles 2 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1914 948; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1584480538833205023 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1584480538833205023; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 221; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1814 876; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1584480538833205023 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 0155fe45051b1; toggleUseWeights off; endTell; setAssignedID 4910.1468925767594.219455671169894921; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1814 876; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1192396388409641781 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 174; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1814 876; setLocation -9 0; setFont SanSerif; setFontSize 14; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;