#NEXUS [written Fri Sep 23 20:34:07 MST 2016 by Mesquite version 3.10 (build 765) at JustinTime.PK5001Z/192.168.0.40] BEGIN TAXA; DIMENSIONS NTAX=17; TAXLABELS 'Gliocephalotrichum_bulbilium_ATCC.22228_*_AY489664.1' 'Gliocephalotrichum_cylindrosporum_CBS.902.70_*_KM232179.1' 'Gliocephalotrichum_longibrachium_CBS.126571_*_KM232178.1' 'Gliocladiopsis_sagariensis_CBS.199.55_*_KM232136.1' PS1001 PS0768 PS0427 'PS0221_cl02' PS0772 'Gliocladiopsis_pseudotenuis_CBS.116074_*_KM232137.1' 'Gliocladiopsis_irregularis_CBS.755.97_*_KM232138.1' 'Curvicladiella_cignea_CBS.109168_*_KM232143.1' 'Curvicladiella_cignea_CBS.101411_*_KM232141.1' 'Calonectria_naviculata_CBS.101121_*_KM232182.1' 'Calonectria_ilicicola_CBS.190.50_*_KM232180.1' 'Xenocylindrocladium_serpens_CBS.128439_*_KM232165.1' 'Xenocylindrocladium_guianense_CBS.112179_*_KM232166.1' ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=651; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Gliocephalotrichum_bulbilium_ATCC.22228_*_AY489664.1' TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCCACTCACTTCAAGACAGTTACGGCTCAATTAGATGCTAACAGTGTGCTTTCAGAGCGATCCCGAATTTGCAGCGGCCATCGCCACCCGCGACCCGAAGGTCCGTTTTAACCGCGTTTGGGAGGTCTGCAAAAAGAAGCGCAGATGTGAGAACGAGGACCGAAACGAGAAGAACAAGGAAGAGGAATATGCCCCTGGTATGAAGCCTGCACAGGTTGAAAACCACGGTGGTTGTGGTAATGTGCAACCCAACGTCCGACAGGCCGCTCTGCAACTTAAGGCTGCCTTCGATGTTGCACAGGAGGACGGCGCGAAGCGACGCGAAACTACTCCCATCACTCCCGAGATGGCCCACAACATTCTTCGAAGGATTTCTGAGCAAGAGCTTGTTAACATGGGCTTGAACTCTGACTATGCTCGTCCCGAATGGATGATCTTGACTGTGCTTCCAGTGCCTCCGCCACCTGTGAGACCCAGTATCTCCATGGACGGTACCAGCACTGGTATGCGTAACGAAGATGATTTGACCTACAAGCTTGGTGATATCATTCGTGCCAACGGTAATGTCAAGCAAGCTATTCGTGAAGGA- 'Gliocephalotrichum_cylindrosporum_CBS.902.70_*_KM232179.1' TCAAGAAGATTTTGGAGATTGTCTGCCACAACTGCAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTCACTTCATGACGGTTACTGGCTCGTTAGATGCTAACCTTGTATTTTCAGAGTGATCCCGAATTCGCAGCTGCTATTGCTACTCGAGACCCTAAGGTCCGCTTCAACCGCGTTTGGGAAGTCTGCAAAAAGAAGCGCAGATGTGAGAACGAGGATAGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTCGAGAACCACGGTGGCTGTGGTAACGTGCAACCCAACGTTCGCCAAGCTGCTCTGCAGCTCAAGGCTGCCTTTGATGTTGCGCAGGAGGATGGCGCCAAGCGACGAGAAACCACTCCCATCACACCTGAGATGGCTCACAATATCCTGCGAAGGATCACTGAGCTGGACCTGGTGAACATGGGTTTGAACTCTGACTACGCTCGTCCCGAGTGGATGATTCTTACCGTGCTCCCCGTGCCCCCACCCCCTGTGAGACCCAGTATCTCCATGGACGGTACCAGCACTGGCATGCGTAACGAAGATGATTTGACCTACAAGCTTGGTGATATCATTCGCGCCAACGGTAATGTCAAGCAGGCTATTCGCGAGGGA- 'Gliocephalotrichum_longibrachium_CBS.126571_*_KM232178.1' TCAAGAAGATTTTGGAGATTGTCTGCCACAACTGCAGCAAGGTGTTGGCCGATAAAGTTGGTCTCCTCACTTCACGAAGGTTAATGGCCTATTAGATGCTAACCATGTACTCTCAGAGCGATCCCGAATTCGCAGCTGCCATTGCCACCCGAGACCCCAAGGTCCGTTTCAACCGCGTTTGGGAGGTCTGCAAGAAGAAGCGCAGATGTGAGAATGAGGATAGAAACGAAAAGAACAAGGAGGAGGAGTACGCCCCTGGTATGAAGCCTGCCCAGGTTGAGAACCACGGCGGTTGTGGTAACGTGCAACCCAACGTCCGACAAGCCGCTTTGCAGCTCAAGGCTGCCTTTGATGTTGCGCAGGAGGACGGCGCCAAGCGACGAGAAACCACTCCCATCACTCCCGAGATGGCCCACAACATCCTCCGAAGGATTACTGAGCAAGAACTCGTTAACATGGGCTTGAACTCTGACTACGCTCGTCCTGAGTGGATGATCTTGACCGTGCTCCCCGTGCCACCGCCTCCTGTGAGACCCAGTATCTCCATGGACGGTACCAGCACTGGCATGCGTAACGAAGATGATTTGACTTACAAGCTTGGTGATATCATTCGCGCCAACGGTAATGTCAAGCAAGCTATCCGCGAGGGA- 'Gliocladiopsis_sagariensis_CBS.199.55_*_KM232136.1' TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTGTTGCCTATTGGATGCTAACCTGATACTCTCAGAGCGATCCCGAATTCGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAGAACGAAGACAGGAACGAGAAGAACAAGGACGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGCTGCGGCAACGTCCAGCCCAACGTTCGACAAGCAGCCCTGCTTCTCAAGGCCGCCTTTGACGTTGCTCAAGAAGATGGTGCTAAGCGACGAGAGACGACTCCCATCACCCCCGAGATGGCTCACAATATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGTCTCAACTCTGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTTCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGCATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAGCTAGGTGATATCATCCGTGCCAACGGTAATGTCAAGCAGGCCATTCGTGAAGGA- PS1001 TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTATGGCTTATTGGATGCTAACCTGATACTCTCAGAGCGATCCCGAATTTGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAAAACGAGGACCGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGCTGCGGTAACGTCCAGCCCAACGTTCGACAAGCGGCCCTGCTGCTCAAGGCTGCCTTCGACGTCGCCCAAGAAGATGGTGCCAAACGACGAGAGACGACACCCATCACCCCCGAGATGGCCCACAACATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGTCTCAACTCCGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTCCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGTATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAGCTAGGTGATATTATCCGCGCCAACGGTAATGTCAAGCAGGCTATTCGTGAAGGA- PS0768 TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTATGGCCTATTGGATGCTAACCTGATACTCTCAGAGCGATCCCGAATTCGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAAAACGAGGACAGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGCTGCGGTAACGTCCAGCCCAACGTTCGACAAGCGGCCCTGCTGCTCAAGGCTGCCTTCGACGTCGCCCAAGAAGATGGTGCCAAACGACGAGAGACGACACCCATCACCCCCGAGATGGCCCACAACATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGTCTCAACTCCGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTCCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGTATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAGCTAGGTGATATTATCCGCGCCAACGGTAATGTCAAGCAGGCTATTCGTGAAGGA- PS0427 TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTATGGCCTATTGGATGCTAACCTGATACTCTCAGAGCGATCCCGAATTCGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAAAACGAGGACAGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGCTGCGGTAACGTCCAGCCCAACGTTCGACAAGCGGCCCTGCTGCTCAAGGCTGCCTTCGACGTCGCCCAAGAAGATGGTGCCAAACGACGAGAGACGACACCCATCACCCCCGAGATGGCCCACAACATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGTCTCAACTCCGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTCCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGTATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAGCTAGGTGATATTATCCGCGCCAACGGTAATGTCAAGCAGGCTATTCGTGAAGGA- 'PS0221_cl02' TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTATGGCCTATTGGATGCTAACCTGATACTCTCAGAGCGATCCCGAATTCGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAAAACGAGGACAGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGCTGCGGTAACGTCCAGCCCAACGTTCGACAAGCGGCCCTGCTGCTCAAGGCTGCCTTCGACGTCGCCCAAGAAGATGGTGCCAAACGACGAGAGACGACACCCATCACCCCCGAGATGGCCCACAACATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGTCTCAACTCCGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTCCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGTATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAGCTAGGTGATATTATCCGCGCCAACGGTAATGTCAAGCAGGCTATTCGTGAAGGA- PS0772 TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTATGGCCTATTGGATGCTAACGTGATACTCTCAGAGCGATCCCGAATTCGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAAAACGAGGACAGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGCTGCGGTAACGTCCAGCCCAACGTTCGACAAGCGGCCCTGCTGCTCAAGGCTGCCTTCGACGTCGCCCAAGAAGATGGTGCCAAACGACGAGAGACGACACCCATCACCCCCGAGATGGCCCACAACATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGTCTCAACTCCGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTCCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGTATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAGCTAGGTGATATTATCCGCGCCAACGGTAATGTCAAGCAGGCTATTCGTGAAGGA- 'Gliocladiopsis_pseudotenuis_CBS.116074_*_KM232137.1' TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTATGGCCTATTGGATGCTAACCTGATACTCTCAGAGCGATCCCGAATTCGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAGAACGAGGACAGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGTTGCGGTAACGTCCAGCCCAACGTTCGACAAGCGGCCCTGCTGCTTAAGGCTGCCTTCGACGTCGCCCAAGAAGATGGTGCCAAACGACGAGAGACGACACCCATCACCCCCGAGATGGCCCACAACATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGTCTCAACTCCGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTCCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGTATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAGCTAGGTGATATTATCCGCGCCAACGGTAATGTCAAGCAGGCTATTCGTGAAGGA- 'Gliocladiopsis_irregularis_CBS.755.97_*_KM232138.1' TCAAGAAGATCTTGGAGATAGTCTGCCACAACTGTAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACTCCATGGAGCTTTATGGCCTATTGGATGCTAACCTGATACTCTCAGAGCGATCCCGAATTCGCGGCCGCCATTGGCACTCGAGATCCCAAAGTCCGCTTCAACCGTGTTTGGGAAGTATGCAAGAAGAAGCGCAGATGCGAGAACGAGGACAGAAACGAGAAGAACAAGGAGGAGGAATACGCCCCTGGTATGAAGCCTGCTCAGGTTGAAAACCACGGTGGCTGCGGTAACGTCCAGCCCAACGTTCGACAAGCGGCCCTGCTCCTTAAGGCTGCCTTCGACGTCGCCCAAGAAGATGGTGCCAAACGACGAGAGACGACACCCATCACCCCCGAGATGGCCCACAACATTCTTCGACGAATCTCGGAGGAAGACCTCATCAACATGGGCCTCAACTCCGACTACGCTCGTCCTGAGTGGATGATCCTGACCGTTCTCCCAGTGCCACCGCCTCCCGTCCGACCCAGTATTTCTATGGACGGTACTAGCACCGGCATGCGCAACGAAGATGATTTGACCTACAAACTAGGTGATATTATCCGCGCCAACGGTAATGTCAAGCAGGCTATTCGTGAAGGA- 'Curvicladiella_cignea_CBS.109168_*_KM232143.1' TCAAGAAGATCCTGGAGATTGTCTGCCACAACTGCAGCAAAGTGTTGGCCGATAAAGTTGGTCTACTCACTACATGAAGCTTGCAGGCCTATTGGATGCTAACATCATAT--TCAGAGTGATCCCGAATTCGCTGCTGCCATCAACACTCGAGACCCCAAGGTTCGATTTAATCGTGTTTGGGAGGTCTGTAAGAAGAAGCGTAGGTGTGAGAACGAGGACAGGAACGAGAAGAACAAGGAAGAAGAATACGCCCCTGGCCTGAAGCCCGCCCAAGTCGAGAACCACGGCGGCTGTGGCAATGTGCAGCCAAACGTTAGACAAGCCGCCCTGCAGCTCAAGGCTGCCTTCGACGTTGCCCAGGAAGATGGCGCGAAGCGACGAGAAACCACACCCATCACCCCTGAGATGGCCCACAACATCCTTCGAAGAATTTCCGAGCAAGATCTCATCAACATGGGACTGAATTCCGACTACGCTCGCCCTGAGTGGATGGTCTTGACAGTGCTTCCCGTGCCACCCCCCCCTGTCAGACCTAGTATTTCAATGGATGGCACTGGTACTGGCATGCGAAACGAAGATGATTTGACCTACAAGCTTGGTGATATCATCCGTGCCAACGGCAATGTTAAGCAGGCCATTCGTGAAGGA- 'Curvicladiella_cignea_CBS.101411_*_KM232141.1' TCAAGAAGATCCTGGAGATTGTCTGCCACAACTGCAGCAAAGTGTTGGCCGATAAAGTTGGTCTACTCACTACATGAAGCTTGCAGGCCTATTGGATGCTAACATCATAT--TCAGAGTGATCCCGAATTCGCTGCTGCCATCAACACTCGAGACCCCAAGGTTCGATTTAATCGTGTTTGGGAGGTCTGTAAGAAGAAGCGTAGGTGTGAGAACGAGGACAGGAACGAGAAGAACAAGGAAGAAGAATACGCCCCTGGCCTGAAGCCCGCCCAAGTCGAGAACCACGGCGGCTGTGGCAATGTGCAGCCAAACGTTAGACAAGCCGCCCTGCAGCTCAAGGCTGCCTTCGACGTTGCCCAGGAAGATGGCGCGAAGCGACGAGAAACCACACCCATCACCCCTGAGATGGCCCACAACATCCTTCGAAGAATTTCCGAGCAAGATCTCATCAACATGGGACTGAATTCCGACTACGCTCGCCCTGAGTGGATGGTCTTGACAGTGCTTCCCGTGCCACCCCCCCCTGTCAGACCTAGTATTTCAATGGATGGCACTGGTACTGGCATGCGAAACGAAGATGATTTGACCTACAAGCTTGGTGATATCATCCGTGCCAACGGCAATGTTAAGCAGGCCATTCGTGAAGGA- 'Calonectria_naviculata_CBS.101121_*_KM232182.1' TCAAGAAGATCCTGGAGATTGTCTGCCACAACTGCAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTCACTCCATGAAGCTCAATGGCCTATTGGATGCTAACCTAATATTCTCAGAGCGATCCCGAATTTGCTGCTGCTATCAATACCCGAGACCCAAAGGTCCGTTTCAACCGCGTTTGGGAAGTGTGCAAGAAGAAGCGCAGGTGTGAGAACGAAGACAGGAACGAGAAGAACAAGGACGAAGAATACGCCCCTGGCATGAAGCCTGCCCAAGTCGAGAACCACGGCGGCTGTGGTAACGTGCAACCCAACGTCCGACAAGCAGCCCTCCAGCTCAAGGCCGCTTTCGATGTTGCCCAAGAAGACGGCGCGAAGCGACGAGAGACGACTCCCATCACCCCCGAGATGGCTCACAACATCCTTCGAAGAATCACCGAGACTGACCTGATCAACATGGGTTTGAACTCTGATTATGCTCGACCTGAATGGATGATCTTGACTGTGCTTCCTGTGCCACCCCCTCCCGTCAGACCGAGTATCTCGATGGATGGTACTGGTACTGGTATGCGCAATGAAGATGATTTGACCTACAAGCTTGGTGATATCATCCGTGCCAACGGTAACGTCAAGCAGGCCATCCGTGAAGGA- 'Calonectria_ilicicola_CBS.190.50_*_KM232180.1' TCAAGAAGATCCTGGAGATTGTCTGCCACAACTGCAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTCACTCCATGAAGCTCAATGGCCTATTGGATGCTAACAAAAT-TTCTCAGAGCGATCCCGAATTTGCTGCTGCTATTGGCACACGAGACCCCAAGGTTCGCTTCAGCCGCGTATGGGAAGTATGCAAGAAGAAGCGCAGATGCGAGAACGAAGACAGGAACGAGAAGAACAAGGAGGAGGAATACGCCCCAGGGATGAAGCCTGCCCAAGTCGAGAACCACGGCGGCTGCGGTAACGTGCAACCCAATGTCCGTCAGGCAGCCCTCCAGCTCAAGGCAGCTTTCGATGTTGCCCAGGAAGACGGCGCGAAGCGACGAGAGACCACTCCTATCACACCCGAGATGGCTCACAACATTCTGCGAAGAATTACCGAGGCCGACCTCGTCAACATGGGTCTTAACTCGGACTACGCTCGACCCGAGTGGATGATTCTCACCGTACTTCCGGTGCCTCCACCTCCCGTCAGACCCAGTATCTCGATGGATGGTACTAGTACCGGTATGCGTAACGAAGATGATTTGACCTACAAGCTTGGCGATATTATCCGTGCCAACGGTAATGTCAAGCAGGCTATTCGCGAAGGA- 'Xenocylindrocladium_serpens_CBS.128439_*_KM232165.1' TCAAGAAGATCTTGGAGATTGTCTGCCACAACTGCAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTCACTCCATGAAGCTTATTGGCTTATTGGATGCTAACCGAATGT--TCAGAGCGATCCCGAATTTGCTGCGGCCATCGGCACGCGAGATCCCAAGGTCCGTCTCAACCGTGTCTGGGAAGTCTGCAAGAAGAAGCGCAGATGCGAGAACGAAGACAGGAACGAGAAGAACAAGGAAGAGGAATACGCCCCCGGAATGAAGCCTGCCCAGGTTGAGAACCATGGCGGCTGCGGTAACGTTCAGCCCAACGTTCGACAGGCAGCTTTGCAACTCAAGGCAGCTTTCGATGTTGCTCAGGAGGACGGCGCCAAGCGACGAGAGACAACCCCCATCACCCCCGAGATGGCCCACAACATCCTGCGACGAATTTCCGAGGAAGACCTCGTCAACATGGGTCTCAACTCCGACTATGCCCGCCCTGAGTGGATGGTTTTGACGGTGCTTCCTGTGCCTCCGCCTCCTGTCAGACCCAGTATCTCCATGGATGGTACTGGTACTGGTATGCGAAACGAAGATGATTTGACCTACAAGCTGGGTGATATCATCCGTGCCAACGGTAATGTGAAGCAGGCTATTCGTGAAGGA- 'Xenocylindrocladium_guianense_CBS.112179_*_KM232166.1' TCAAGAAGATTTTGGAGATTGTCTGCCACAACTGCAGCAAGGTGTTGGCCGATAAAGTTGGTCTACTTACACCATAAAGCTTACTGGCCTGTTGGATGCTAACCGAATAT--TCAGAGTGATCCCGAATTTGCTGTGGCCATCGGCACACGAGACCCCAAGGTTCGCTTTAACCGCGTTTGGGAAGTCTGCAAGAAGAAGCGCAGATGCGAGAACGAGGATAGAAACGAGAAGAACAAGGAAGAGGAATACGCTCCAGGAATGAAGCCTGCCCAGGTCGAGAACCACGGCGGTTGTGGCAATGTCCAGCCCAATGTTCGCCAAGCAGCTCTGCAGCTCAAGGCTGCCTTCGATGTTGCTCAGGAAGATGGCGCTAAACGACGAGAGACGACCCCCATCACCCCCGAGATGGCTCACAACATCCTGCGACGGATTACCGAGGAAGATCTCATCAACATGGGATTGAACTCTGACTACGCCCGCCCCGAGTGGATGGTTTTGACCGTACTTCCTGTGCCCCCGCCTCCTGTCAGACCTAGCATCTCCATGGATGGTACTGGTACTGGTATGCGAAACGAAGATGATTTGACCTACAAACTTGGTGATATCATCCGTGCAAACGGTAATGTCAAGCAGGCCATTCGTGAAGGA- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 651; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 17; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 651; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 651; END; BEGIN TREES[!'Parameters: Trees obtained from file RAxML_bipartitions.result.manual2^n1 trees.']; Title RPB1_ML_Tree; ID 01575a3de10815; LINK Taxa = Taxa; TRANSLATE [0] 1 'Gliocephalotrichum_bulbilium_ATCC.22228_*_AY489664.1', [1] 2 'Gliocephalotrichum_cylindrosporum_CBS.902.70_*_KM232179.1', [2] 3 'Gliocephalotrichum_longibrachium_CBS.126571_*_KM232178.1', [3] 4 'Gliocladiopsis_sagariensis_CBS.199.55_*_KM232136.1', [4] 5 PS1001, [5] 6 PS0768, [6] 7 PS0427, [7] 8 'PS0221_cl02', [8] 9 PS0772, [9] 10 'Gliocladiopsis_pseudotenuis_CBS.116074_*_KM232137.1', [10] 11 'Gliocladiopsis_irregularis_CBS.755.97_*_KM232138.1', [11] 12 'Curvicladiella_cignea_CBS.109168_*_KM232143.1', [12] 13 'Curvicladiella_cignea_CBS.101411_*_KM232141.1', [13] 14 'Calonectria_naviculata_CBS.101121_*_KM232182.1', [14] 15 'Calonectria_ilicicola_CBS.190.50_*_KM232180.1', [15] 16 'Xenocylindrocladium_serpens_CBS.128439_*_KM232165.1', [16] 17 'Xenocylindrocladium_guianense_CBS.112179_*_KM232166.1'; TREE tree_1 = ((((13:0.000001,12:0.000001):0.131165,(14:0.051353,15:0.091574):0.034018):0.014663,((17:0.071562,16:0.060384):0.032764,(4:0.021777,((5:0.004433,(9:0.001472,(7:0.000001,(8:0.000001,6:0.000001):0.000001):0.000001):0.000001):0.0016,(11:0.005986,10:0.001454):0.001397):0.016369):0.112537):0.011235):0.09947,(1:0.122547,3:0.023532):0.012306,2:0.069382); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1474688047770; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4522254549614842986; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3976647053680065853; mqVersion 310; checksumv 0 3 3933056263 null getNumChars 651 numChars 651 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 204673.0 sumSquares 204673.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 274; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1299 799; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4522254549614842986 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4522254549614842986; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1025 727; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4522254549614842986 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 01575a3de10815; toggleUseWeights off; endTell; setAssignedID 2901.1474687790248.6653143119952461156; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1025 727; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleColorAssigned off; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((16:0.060384,17:0.071562):0.016382,(((2:0.069382,(1:0.122547,3:0.023532):0.012306):0.09947,((12:0.000001,13:0.000001):0.131165,(14:0.051353,15:0.091574):0.034018):0.014663):0.011235,(4:0.021777,((10:0.001454,11:0.005986):0.001397,(5:0.004433,(9:0.001472,(7:0.000001,(6:0.000001,8:0.000001):0.000001):0.000001):0.000001):0.0016):0.016369):0.112537):0.016382);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3976647053680065853 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 395; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1025 727; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;