#NEXUS [written Thu Aug 18 19:41:19 CST 2016 by Mesquite version 3.10 (build 765) at He/59.79.254.15] BEGIN TAXA; DIMENSIONS NTAX=20; TAXLABELS Homo_sapiens_ABCD1 Homo_sapiens_ABCD2 Homo_sapiens_ABCD3 Homo_sapiens_ABCD4 Drosophila_melanogaster_CG2316 Drosophila_melanogaster_CG12703 Tetranychus_urticae_05g06640 Tetranychus_urticae_35g01360 Danaus_plexippus_OGS210049 Danaus_plexippus_OGS213906 Danaus_plexippus_OGS213908 Heliconius_melpomene_010424 Heliconius_melpomene_006069 Bombyx_mori_GA012688 Bombyx_mori_GA004616 Manduca_sexta_OGS205212 Manduca_sexta_OGS211687 Plutella_xylostella_007715 Plutella_xylostella_010704 Plutella_xylostella_010231 ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=1206; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Homo_sapiens_ABCD1 --------MPVLSRPR-PWRGNTLKRTA---VLLALAAYGAHKVY-------------------------------------------PLVRQCLAPARGLQAPAGEPTQEASGVAA-----------------------------AK-AGMNRVFLQRLLWLLRLLFPRVLCRETGLLALHSAAL--------------------VSRTFLSVYVARLDGRLA----RCIVRKDPRAFGWQLLQWLLIALPATFVNSAIRYLEGQLALSFRSRLVAHAYRLYFSQQTYYRVSNMDGRLRNPDQS----------------LTEDVVAFAASVAHLYSNLTKPLLDVAVTSYTLLRAARSRGAGT-----------------------------AWPS-AIAGLVVFLTANVLRAFSPKFGELVAEEARRKGELRYMHSRVVANSEEIAFYGGHEVELALLQRSYQDLASQINLILLERLW-YVMLEQFLMKYVWSASGLLMVAVPIITATGYSESDAEAVKKAALEKKEEELVSERTEAFTIARNLLTAAADAIERIMSSYK--------------------------------------------------------------EVTELAGYTARVHEMFQVFEDVQRCHFKRPR-ELEDAQAGSGTIGRSGVRVEGPLKIRGQVVDVEQ----GIICENIPIVTPSGE-VVVASLNIRVEEGMHLLITGPNGCGKSSLFRILGGLWPTYGGVLYKPPP----------------------QRMFYIPQRPYMSVGSLRDQVIYPDSVEDMQRKGYSEQDLEAILDVVHLHHILQREGGWEAMCDWK--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRI--------GMARMFYHRPKYALLDECTSAVSIDVEGKIFQA-AKDAGIALLSITHR-PSLWKYHTHLLQFDGEGGWKFEKLDSAARLSLTEEKQRLEQQLAGIPKMQRRLQELCQILGEAVAPAHVPAPSPQGPGGLQGAST------------------ Homo_sapiens_ABCD2 -----MTHMLNAAADRVKWTRSSAAKRA---ACLVAAAYALKTLY-----------------------------------PIIGKRLKQSGHGKKKAAAYPAAENTEILHCTETICEK----------------------------PS-PGVNADFFKQLLELRKILFPKLVTTETGWLCLHSVAL--------------------ISRTFLSIYVAGLDGKIV----KSIVEKKPRTFIIKLIKWLMIAIPATFVNSAIRYLECKLALAFRTRLVDHAYETYFTNQTYYKVINMDGRLANPDQS----------------LTEDIMMFSQSVAHLYSNLTKPILDVMLTSYTLIQTATSRGASP-----------------------------IGPT-LLAGLVVYATAKVLKACSPKFGKLVAEEAHRKGYLRYVHSRIIANVEEIAFYRGHKVEMKQLQKSYKALADQMNLILSKRLW-YIMIEQFLMKYVWSSSGLIMVAIPIITATGFADGE---------DGQKQVMVSERTEAFTTARNLLASGADAIERIMSSYK--------------------------------------------------------------EVTELAGYTARVYNMFWVFDEVKRGIYKRTA-VIQESESHSKNGAKVELPLSDTLAIKGKVIDVDH----GIICENVPIITPAGE-VVASRLNFKVEEGMHLLITGPNGCGKSSLFRILSGLWPVYEGVLYKPPP----------------------QHMFYIPQRPYMSLGSLRDQVIYPDSVDDMHDKGYTDQDLERILHNVHLYHIVQREGGWDAVMDWK--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRM--------GMARMFYHKPKYALLDECTSAVSIDVEGKIFQA-AKGAGISLLSITHR-PSLWKYHTHLLQFDGEGGWRFEQLDTAIRLTLSEEKQKLESQLAGIPKMQQRLNELCKILGEDSVLKTIKNEDETS--------------------------- Homo_sapiens_ABCD3 -------MAAFSKYLTARNSSLAGAA-----FLLLCLLHKRRRAL--------------------------------------------GLHGKKSGKPPLQNNEKEGKKER-------------------------------------AVVDKVFFSRLIQILKIMVPRTFCKETGYLVLIAVML--------------------VSRTYCDVWMIQNGTLIE----SGIIGRSRKDFKRYLLNFIAAMPLISLVNNFLKYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQL----------------LTQDVEKFCNSVVDLYSNLSKPFLDIVLYIFKLTSAIGA----------------------------------QGPA--SMMAYLVVSGLFLTRLRRPIGKMTITEQKYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLHNFILFRFS-MGFIDSIIAKYLATVVGYLVVSRPFLDLSH--------------PRHLKSTHSELLEDYYQSGRMLLRMSQALGRIVLAGR--------------------------------------------------------------EMTRLAGFTARITELMQVLKDLNHGKYERTM-VSQQEKGIEGVQVIPLIPGA------GEIIIADN----IIKFDHVPLATPNGD-VLIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLTKPER----------------------GKLFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWM--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRM--------AMARLFYHKPQFAILDECTSAVSVDVEGYIYSH-CRKVGITLFTVSHR-KSLWKHHEYYLHMDGRGNYEFKQITEDTVEFGS---------------------------------------------------------------------- Homo_sapiens_ABCD4 ------------MAVAGPAPGAG---------------------------------------------------------------------------------------------------------------------------AR-PRLDLQFLQRFLQILKVLFPS-WSSQNALMFLTLLCL-----------------------TLLEQFVIYQVGLIPSQYYGVLGNKDLEGFKTLTFLAVMLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHRLYFRGRAYYTLNVLRDDIDNPDQR----------------ISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTGW----------------------------------LGPV--SIFGYFILGTVVNKTLMGPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYRAGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTF--DYLGSILSYVVIAIPIFSGVY-----------------GDLSPAELSTLVSKNAFVCIYLISCFTQLIDLST--------------------------------------------------------------TLSDVAGYTHRIGQLRETLLDMSLKSQDCEI-LGESEW---GLDTPPGWPAAEPAD-------------TAFLLERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTD-------------------FGPHGVLFLPQKPFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PGEMQRL--------SFARLFYLQPKYAVLDEATSALTEEVESELYRI-GQQLGMTFISVGHR-QSLEKFHSLVLKLCGGGRWELMRIKVE---------------------------------------------------------------------------- Drosophila_melanogaster_CG2316 ----MSVLSKYVDRIAEKCEHNGFTKHAFSYALVTSAILALTIKVTIPYVKNVNT-------------------------TSSVRTQKGKTNGQLSPSTRDSSEEDFKLAEAEKLLVAQQLKKKATNNL-----------------VE-PGLNKEFLKHLQMLAKIMIPQAFCYETGLLSVHTFCL--------------------ISRTFLSIYVAALEGALV----KFIVRKDIKQFALVLLKWFGIAIPATFVNSMIRFLESKLSLAFRTRLVRHSYRLYFKNQNYYRVSNLDGRIENADHR----------------LTEDISVFANSVAHLYSSLTKPCFDLMLIGLALMRSSKKMKANII----------------------------TGPA--LSIGVIALTAHILRIVSPKFGQLVSEEANRYGYLRHIHSRIITNAEEIAFYGGHKVEMQQLRQAYNRLVNQMTTIFNQKLW-FIMLEQFFMKYVWSGTGMIMVSLPILTGSDVGLGTVPN------TAISESRVSERTQYLTTARNLLISAADAIERLMSSYK--------------------------------------------------------------EIVSLAGYTFRVAGMMDVFEETALGVYCKTS-VMESNQSNGIIEFRNGKPIA-----KGRIIYSDDPKNMSISLRAVPVVTPNCD-IVVPKLTLCIEPGVHLLITGPNGCGKSSLFRILSGLWPIYAGELHIPRP------------------VKDVPCMFYIPQRPYMSIGSLCDQIIYPDTREDMKRKHITENELRSILKMVSLEHIAQRD-SFDVVRDWK--DILS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRM--------AIARLFYHRPRYALLDECTSAVSIDVESSIYEI-AKGMGITLLTITHR-PTLWKYHTHILEFDGLGNWQFRKMNSDEEQKGQFLS------------------------------------------------------------------- Drosophila_melanogaster_CG12703 -------MAPALSKLA-NNQSAIVGVAG---MTAALWIIAYGKMS--------------------------------------------NKKRKPGYEDKIQYTIAEKKDKKA---------------------------------GK-AHVNSVFFKQLRQLLPILIPGFWSVETGLLFLVAAAL--------------------IGRSVSDIWMIQNATVVE----STIIHMNRTKFKTALLKYLTALPAISVVTNVLKWSLGELKLRFRTNLTHHLYSQYLNGYTYYKMSNLDNRIANADQL----------------LTTDIDKFCESATDLYSNISKPVLDIFIYVYRLTVNLGG----------------------------------KTPS--ILMLYLLFAGVFLTRLRRPTGRLTVEEQKLEGEFRYVNSRLITNSEEVAFYQGNVREKLTLLASYSKLRSHLRKFLEFRVS-MGIIDNIIGKYFASIVGFYAVSIPFFSENH--------------PLLSGENSGQRLQAYYTYGRMLVKLAEAIGRLVLAGR--------------------------------------------------------------EMSRLAGFTARMTELIKVLSDLNKGTYERTM-VNGNNLAQNAVGSASSNFGPN----KGIMCFEDN----IIRFEKVPLVTPNGD-VLLQELSFEVKSGTNVLVCGPNGCGKSSLFRILGELWPTWGGKVTKPSR----------------------GKLFYVPQRPYMTLGTLRDQIIYPHTRDDMRRLGHSDEDLMHYLDIVQLTYLEQRENGLDSIEDWI--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRI--------AMARLFYHKPQFAILDECTSAVSVDVEGKMYSY-CREVGITLFTVSHR-KSLWAHHDYYLQFDGRGSYEFATIDQDKDHFGS---------------------------------------------------------------------- Tetranychus_urticae_05g06640 MSAVLSKLREFSDNHTIPHHQFTRVASG---LIFALYFYKFGTPVVSKLVSSCQAKAQFIQEKITGLDSFNDDGTVKDQDLLNSISYRPSTKSQNEKSKPSEDYTNFGIRDGSILDIVMDTIVKSLRQFQ----------------AL-TGFNVTFIIQLVKLIRIMVPGVRTVEVALLLLHTMSL--------------------VSRTFLSIFVANLEGQVV----KYIVRRDVVNFASMLTKWLLIAVPATFINSSIRFLENQLALAFRTRLVRYGYELYFKNQTYYAVSNLDGRLENPDHC----------------LTDDIISFSQHCAHLYSSVTKPLLDLFLITYTLLKMSQQMGSYGRY---------------------------GGYGQLMNAVAIISTHGILRWISPKFGSLVSEEARRKGFLRSVHARVITNAEEIAFYGGHLIELNVVQRAYKALAQQMNVIYNQRLW-YIMFEQFLMKYVWSALGMVNIAIPVMTGKGSSFAKQDGVQQND-GGYDHEDISERTQYMTTAKNILIAGGDAAERLMSSYK--------------------------------------------------------------ELIELTGYTKRVARMFTVFEEVSQGKYKK-I-GTESSKKRGALPPDVCFTAEGILAQKGIVIQVED----YIELTDVPVITPNYD-VIVPKLSFKMTRDMHLLITGPNGCGKSSLFRILAGLWPIFGGKLHRPST----------------------KEMFYIPQRPYMSLGTLRDQVIYPDCIEDMKRKGITDLDLEKILSQVHLDYLIRKDESWDRRADWK--DTLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRI--------GVARLFYHRPKYALLDECTSAVSIDVESKMYQL-TKDYGINLITITHR-PSLWKFHTHLLQFDGSGGWRLEPLDTNARLTLREEKQKLEEQLDGVPNIQRRLVELCSILGENSEILAREKSNSSGSSDEERPGSPKSDVFDSQSQPESTMSD Tetranychus_urticae_35g01360 MSILSKFSIPNRSKIT-RNQWVLIVGSSLSLTLWTCSVLSRGKSN----------------------------------------------RKSKNLDDQPLFLEKDGQLSR----------------------------------PK-TENLSKTMAELKVILKMIAGG---KEYAYGFGVIVIL--------------------IVKTINDLWLMSNGTQIE----AAIITANLSKLKSNLSAFFLAMPTLAVTNNLFKYFLNQLRLNLRHKLSIILYDKYIDGLTYYRINVFDDQCRNLDQL----------------LTSDVEKFCNTLVDVYSNIAKPLLDIFTLVYRLSVSYTGF---------------------------------KTPG--AMITYLLVSGTILTSVRRPLTRLTIKETQLEGQLRYVHSRLIANCEEVAFYQGNNRERLTLMSALNRLKNHLHNVAIFKFN-IDFLDNLIARYFAVVVGYLSLAIPFFSNSM------------------PGTTQDRLEAYYKSGRMMVRLAESIGRLVLAGR--------------------------------------------------------------DLSRLAAYTQRVTQLMRSIEANRRSLSTSKR-CNSMFTAGAGVIQLCDITKP------------------QIVFDKVPLCTPGGD-VLCKSLSFTIKQGQNVIVTGPNGCGKSSLFRIIGELWPLCGGKLIKPPN----------------------NRLFYIPQKPYLALGTLRDQIIYPDTVADMKRKGVSDSDLITLLAKVELTYLLERDYNMDSIHDWA--EVFS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRI--------AIARCLYNRPLFAILDECTSAVSVDVEQRVYQYLTVETGCTLLSVTHRVKQLQQFHQFALKFDGCGNCSFEEIEEDSVLV------------------------------------------------------------------------ Danaus_plexippus_OGS210049 -------MAPNFSKITSRTDVKLGLAAS---AALSAWILRNFLKS-----------------------------------------KKNVKQGQLSPAETVQYMIKDKDRKG----------------------------------PK-AQVDAQFFAELKSLWKIMVPGLWTKESGFMALIALSL--------------------ISRTLCDLWLIQHTTLVE----GSIITMNLNEFRRLLTQLFISMPL---------WSIGEVKLRLRTNLSLHLYQQYLKGFTYYQVTNLDNRISNADQL----------------LTTDIDKFCDTVIDLYSNISKPMLDISIYLYRLTVNLGP----------------------------------STPG--IMMAYLLVSGIFLTYLRKPTAKMTVQEQKLEGEFRYVNSRLITNSEEIAFYQGNHREQLTILASFYKLTRHLRNFLNFRVM-MGFIDNIVAKYIAITVGFYAVSRPFFVKDH--------------NLLTTGTEQDRFQHYYTYGRMLVKMAEGIGRLVLSGR--------------------------------------------------------------ELSKLAGLTARVTQLRHVLEDINKGNYKRTM-VERQAN---GNGPPMLLSPG-----AGKIIYQDK----IIRFDKVPLVTPNGD-VLIKELTFEVKSGINVLVCGPNGCGKSSMFRMLGELWPIFGGTLTKPPK----------------------GKLFYVPQRPYMTLGTFRDQVIYPQIQQEMIRRGRTDEELLKFLDIVQLSYLVTRDGGWDAVEDWM--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRI--------AMARLFYHAPQFAILDECTSAVSVDVEGQMYRY-CREMGISLFTVSHR-KSLWQHHDHFLQMDGRGGYVFGEIDNDTQEFGS---------------------------------------------------------------------- Danaus_plexippus_OGS213906 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQWFGIAIPATFINSMIRYLESRLALAFRTRLVNHAYELYFKNQTYYRVANLDARIENADHR----------------LTEDVSVFSQSVAHLYSSLTKPCFDLLLIVLTLATYSNKMKGNIF----------------------------LGPG--IATVVICLTGQLLRILSPRFGALAGEEARMKANLRHVHSRLIAHAEEVAFYGGHKVELSQLQSAYKELVAQMTCVFNKKLW-YVMLEQFCMKYVWSGTGMVMLALPILTGTR-------------IDGNTGEGISARTEYMTTSRNLLNSAADAIERLMSSYKFGCNVNPLYTTRPYMSEGSLIDQITYPSRAAPGDLSAEARAAHILRVVRLDACAARHGGLRAEIVTLAGYSRRVSDMLVVFGEVARGRCVRAVHVAAPNTNGFQVTFKDGQPVP-----QGKISYTTD---LSILLRNVPIVTPSCD-VVASGVTLELRPGTHLLIVGPNGCGKSSLFRIISGLWPVFGGELSVPRP----------------CECLARPVMFYIPQRPYMSEGSLIDQITYPSRAAPGDLS--AEARAAHILRVVRLDACAARHGGLRAVRDWK--STLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRV--------ACARMFYHRPVYALLDECTSAVSMETEVVMYEE-AVKEGITLLSITHR-PSVWKYHTHVLEFDGTGNWSFRPLEKDAAAITPGLPRLSEVKEDEAKEATIN--------------------------------------------------- Danaus_plexippus_OGS213908 ----------------------------------------------------------------------------------------------------------------------------------------------------------------MVIMKILI-----------------------------------------------------------------------------------------------------------------------------SIAGKIS---------------------YTTDLS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ILLRNVPIVTPSCD-VVASGVTLELRPGTHLLIVGPNGCGKSSLFRIISGLWPVFGGELSVPRPCECAHCAEHDAPGTPPERCLARPVMFYIPQRPYMSEGSLIDQITYPSRAAPGDLS--AEARAAHILRVVRLDACAARHGGLRAVRDWK--STLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRV--------ACARMFYHR----------------------------------------------------------------------------------------------------------------------------------------------- Heliconius_melpomene_010424 -------MAPNLSKITSRTDVKLGIAAS---AALSAWILRNYLNS----------------------------------------RPKNVKSGQLSPEERVQYMITDKNKRE----------------------------------PK-AQVDARFIAELKVLWSIMFPSLWSKENGFMALIALSL--------------------ISRTLCDLWLIQHTTLIE------------------------------------------------------------GGFTYYQVTNLDNRISNADQL----------------LTTDIDKFCDTVIDLYSNISKPILDISIYLYRL----------------------------------------TTPA--MMMGYLFLSGLFLTYLRRPTARMTVREQKLEGEFRYVNSRLITNSEEIAFYQGNNREQLTILASFYKLTKHLRNF-------------------AVTIGFLAVSRPFFVKDH--------------NLLTIGTEQDRFRHYYTYGRMLVKMAEGIGRLVLSGR--------------------------------------------------------------ELSKLAGLTARVTQLRIVLEDINTGNYTRTM---------------------------------------------------------------------------------SSMFRMLGELWPIFGGTLTKPPK----------------------GKLFYVPQRPYMTLGTFRDQ----------------------------LSYLTHREGGWDAVEDWM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DMARLFYHAPQFAILDECTSAVSVDVEGHMYQY-CREMGISLFTVSHR-KSLWKHHDHYLQMDGRGGYVFGEIDNETQEFGS---------------------------------------------------------------------- Heliconius_melpomene_006069 MPAILTKIKEHAFKVQ-PTIAVGVGVGV---ALAACAVLRAVMKYCKLYHNVNDGASVFCHDSDNAKSALKCKMFIIHLSHLYLLMSHIAKNGQLQPVD-----NGQAQTCGGRCGAEQCALCRGDADTD----------------NK-QNIVGIYFCCPVIHWEIIL--FFCNCMYYLFKIKYSVGRKEREDADETQSVEEHVPGLNLEFLRQLISLAKIMVPGFRIKHIVQKDLRAFAALLMQWFGIAIPATFINSMIRYLESKLALAFRTRLVNHAYNLYFKNQTYYRVANLDARIENADHRRYGKSVKIGKPYKLDKLTEDVSTFTQSVAHLYSSLTKPCFDLLLIVLTLASYSSKMKGNIF----------------------------LGPG--MATVVICLTGQLLRLLSPRFGALAGEEAKMKANLRHVHSRLIAHAEEVAFYGGHNVELGQLQSAYKQLVTQMTSVFNKKLW-YVMLEQFCMKYVWSGTGMVMLALPILTASR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Bombyx_mori_GA012688 --------------------------------------------------------------------------------------------------------------------------------------------------MN-NVIEVTILKG-----------------------------------------------------------------------------------------------------------------------------KGFTYYQVTNLDNRISNADQL----------------LTTDIDRFCETVVDLYSNISKPLLDIAIYLYRLTVNLGA----------------------------------STPG--IMVAYLLVSGVLLTHLRKPTAKMTVQEQKLEGEYRYVNSRLITNSEEIAFYQGNHRERLTVLASFYKLTRHLRNFLNFRVC-MGFLDNIIAKYIAITVGFYAVSRPFFVKDH--------------NLLTTSTENDRFKHYYTYGRMLVKMAEGIGRIVLSGR--------------------------------------------------------------ELSKLAGLTSRVTQLRVVLDDINKGNYSRTM-VDKTSHSANG---PPRLLAPG----AGRIIYQDK----IIKFDKVPLVTPNGD-ILIDELSFEVKSGINVLVCGPNGCGKSSMFRQLGELWPIFGGTLTKPPK----------------------GKLFYVPQRPYMTLGTLRDQVIYPQTREEMVRRGRSDEQLGRFLRIVQLEYLAARDGGWDAVEDWM--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRI--------AMARLFYHEPQFAILDECTSAVSVDVEGQMYQY-CREMGISLFTVSHR-KSLWKHHDHYLQMDGRGGYVFEEIDAETQEFGS---------------------------------------------------------------------- Bombyx_mori_GA004616 MPAILSKIREQATRVQ-PSLALGVGVGV---ALAACAVYSTRDKKQAPPCNNNN-------------------------------NYKILKNGNIHTEDNVKTNETCGGRCG----AEQCALCRGEVDTDNKQNIEDADETQSIEEHV-PGLNLEFLRQLISLARIMVPGFRSHEVALLTAHTLCL--------------------FSRTFLSIYVASLEGSIV----KHIVQKDMRSFSSLLMQWFGIAIPATFINSMIRYLESRLALAFRTRLVNHAYELYFKNQTYYRVANLDARIENADHR----------------LTEDVSVFTQSVAHLYSSLTKPCFDLLLIVLTLASYSNKMKGNIF----------------------------IGPG--IATVVICATGQVLRMLSPRFGALAGEEARMRANLRHVHASLIAHAEEVAFYGGHKVELGQLQSAYKQLVAQMTSVFNKKLW-YVMLEQFCMKYLWSGTGMVMLALPILTGTK--------------EGGESNSISARTEYMTTSRNLLNSAADAIERLMSSYK--------------------------------------------------------------EVVTLAGYATRVSDMLLVFGEVARGRCVRAV-HVAPPHQAFQVTFRDNQPVP-----QGKVMYTDD---LSIKLRNVPIVTPACD-VVAAGVTLDIAPGTHLLIVGPNGCGKSSLFRIISGLWPVFGGELSVPRP---CACGHCADETNTSDACASRPIMFYIPQRPYMSAGSLLDQVTYPSRAAPDDAA--AEERARRILRAVRLHAAAARLGGLRAVRDWR--ATLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRL--------AMARMFYHRPVYALLDECTSAVSMETEVVMYEE-AVKEGITLLSITHR-PSVWKYHTHVLEFDGAGNWSFRKLDKESAVSSPAINSAATSTPAEPPAEH----------------------------------------------------- Manduca_sexta_OGS205212 MPAILTKIREQASRVQ-PSIALGVGVGV---ALAACAVYGTREKKQVPPCNNNN-------------------------------NYKVTKNGNLHAVDNGTTKETCGGRCG----AEQCALCRGEVDTDNKQNIEDADETQSVEEHV-PGLNLEFLRQLVTLARIMVPGFRSHEVALLSVHTLCL--------------------FSRTFLSIYVASLEGSIV----KHIVQKDMRSFAALLLQWFGIAIPATFINSMIRYLESRLALAFRTRLVNHAYELYFKNQTYYRVANLDARIENADHR----------------LTEDVSVFTQSVAHLYSSLTKPCFDLLLIVLTLASYSSKMKGNIF----------------------------IGPG--IATVVICLTGQVLRLLSPRFGALAGEEARMRANLRHVHSSLIAHAEEVAFYGGHKVELGQLQSAYKELVAQMTSVFNKKLW-YVMLEQFCMKYVWSGTGMVMLALPILTGTR--------------DGSTGESISARTEYMTTSRNLLNSAADAIERLMSSYK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VRYFV------------------------------------------------------------------------------------------------------------------------------------------------- Manduca_sexta_OGS211687 -------MAPSLSKLTGRTDVKIALAAS---AALSAWLIRNSIKS---------------------------------------RTPKSTKPGRLSPEEQIQYMIKERGQKS----------------------------------PR-AQVDARFLAELNALWKIMMPGFWTKESGFMILIAISL--------------------ISRSMCDLWLIQQTTLVE----GSIITMNHGEFRRLLIQFFTAMPLISLVNNVLKWSIGELKLRIRTNLSLYLYQEYMKGFTYYKVSNLDNRISNADQL----------------LTTDIDKFCDTIVDLYSNISKPLLDIGIYLYRLTVNLGA----------------------------------STPG--IMMVYLLLSGVLLTYLRRPTARMTVQEQKLEGEFRYVNSRLITNSEEIAFYQGNHREQLTLLASFYKLTRHLRKFLNFRVC-MGFIDNIIAKL------------------------------------------------------------------------------------------------------------------------------------DICT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGGWDAVEDWM--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRI--------AMARLFYHEPQFAILDECTSAVSVDVEGHMYQY-CREMGISLFTVSHR-KSLWKHHDHYLQMDGRGGYTFGEINNETQEFGS---------------------------------------------------------------------- Plutella_xylostella_007715 ------------WYVRNSFKTKGKSSDG--------------------------------------------------------------QLSTLSPEERIQYMIKEKNKKG----------------------------------PK-AQVDARFFAELKALWKIMVPGLWTKEAGYMALIAFSL--------------------ISRSMCDLWLIQHTTLIE----GSIISMNKKEFVRLLTQFFTAMPLISLVNNILKWSIGEMKLNIRTNLTMHLYENYMKGFTYYQVTNLDNRISNADQL----------------LTTDVEKFCETVVDLYSNISKPMLDIGIYLYRLTMNLGATKFCETVVDLYSNISKPMLDIGIYLYRLTMNLGGTTPG--IMMAYLFLSGVLLTHLRKPTARLTVEEQKLEGEFRYVNSRLITNSEEIAFYQGNHREQLTLLASFYKLTRHLRRFLNFRVG-MGFVDNIIAKYIAITVGFFAVSRPFFVKDH--------------NLLTTGSDNDRFKHYYTYGRMLVKMAEAIGRLVLSGR--------------------------------------------------------------ELTKLAGLTSRVTQLRVVLDEVNKGKYTRTM-LDNSTANGHGNGPPMILAPG-----AGRIIYQDN----IIKFDKVPLVTPNGD-VLIKELCFEVKSGINVLVCGPNGCGKSSMFRTLGELWPVFGGALTKPPR----------------------GKLFYVPQRPYMTLGTFRDQIIYPQTREEMLRRGRSDTELTKFLDIVQLSYLSQRDGGWDAVEDWM--DVLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRV--------AMARLFYHEPQFAILDECTSAVSVDVEGQMYQY-CREMGISLFTVSHR-KSLWKHHDHFLQMDGLGGYVFGEIDGETQEFGS---------------------------------------------------------------------- Plutella_xylostella_010704 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSYNPYKLVFKP-DYWRTT--------AGER-------------------------------------------------------------------------------------------PG--MFTTPPPLRKMVQTRSAHEREKMALLEQSTQDGPSGLNVNVATS------------EKITTKNELKECEPPVRKV-----------------DIAITVGFFAVSRPFFVKDH--------------NLLTTGSDNDRFKHYYTYGRMLVKMAEAIGRLVLSGR--------------------------------------------------------------ELTKLAGLTSRVTQLRVVLDEVNKGKYTRTM-LDNSTANGHGNGPPMILAPG-----AGRIIYQDN----IIKFDKVPLVTPNGD-VLIKELSFEVKSGINVLVCGPNGCGKSSMFRTLGELWPVFGGALTKPPR----------------------GKLFYVPQRPYMTLGTFRDQIIYPQTREEMLRRGRSDAELTKFLDIVQLSYLSQRDGGWDAVEDWM--DVLSHHPSAISLYAAELPVAMSLYAAELPVAMSLYAAELPVAMSLYAAELPVAMSLYAAELPVAMSLYAAALPVAMSLYAAALPVAMSLYAAALPVAMSLYAAELPVAMSLYAAELPVAARAARSSGSPYVYCVYLSPCLCMQLSYLSPCLFMQWSYPSPCLCMPLSYLSPCLCMQLSYLSQLRAARSRGSLPLQILLIAVFVHQMARLFYHEPQFAILDECTSAVSVDVEGQMYQY-CREMGISLFTVSHR-KSLWKHHDHFLQMDGLGGYVFGEIDGETQEFGS---------------------------------------------------------------------- Plutella_xylostella_010231 MPAILSKIREQASRVQ-PTVALGGGVGV---ALAACALYGTREKKQPPPCQNNNNYKR----------------------TIVGTRLQVAKNGKLHCVEGGGKGGECGAGCGERCGAAQCALCRGEADTDNKQNIEDADDTPLPEAPHTPGLNMEFVKQIISLAKIMVPGVRSHEAAILFCHTMCL--------------------FTRTFLSIYVASLEGSIV----KHIVQKDMRSFASLLLQWFGIAVPATFINSMIRYLESKLALAFRTRLVNHAYELYFKNQTYYRVSNLDARIENADHR----------------LTEDVSVFTTSVAHLYSSLTKPCFDLLLIVLTLATYSNKMKGNIL----------------------------MGPS--IATVVICLTGQLLRVLSPSFGALAGEEARMRANLRHVHARLIAHAEEVAFYGGHKVELGQLQDAYSELCGQMTSVFNKKLW-YVMLEQFFMKYVWSGTGMVMLALPILTGTS--------------SGSTTQGISDRAEYMTTSRNLLNSAADAIERLMSSYK--------------------------------------------------------------EIVTLAGYAERVSDMLVVFSEVARGRCVRAVHVAPPAGAAFSVTFRNGEPVP-----MGKIIYSDD---LAIRLRNVPIVTPACD-VVAGGVTLDIEPGSHLLIIGPNGCGKSSLFRIVSGLWPVHGGTLQVPRP---CACAACADEAPGAPPCRQRPIMFYLPQRPYMSMGSLIDQVTYPARVAPGDTE--AEARASAILDRVHLSACAARHGGLRVTRDWR--STLS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGEKQRM--------AMARMFYHRPVYALLDECTSAVSMETEVVMYEA-AVREGITLLSITHR-PSVWKYHKHVLEFDGAGNWSYRPLDKEAFAAPRPPLALPEPSGDN---------------------------------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1206; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1206; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 1206; END; BEGIN TREES; Title Imported_trees; ID 01569caceaa15; LINK Taxa = Taxa; TRANSLATE [0] 1 Homo_sapiens_ABCD1, [1] 2 Homo_sapiens_ABCD2, [2] 3 Homo_sapiens_ABCD3, [3] 4 Homo_sapiens_ABCD4, [4] 5 Drosophila_melanogaster_CG2316, [5] 6 Drosophila_melanogaster_CG12703, [6] 7 Tetranychus_urticae_05g06640, [7] 8 Tetranychus_urticae_35g01360, [8] 9 Danaus_plexippus_OGS210049, [9] 10 Danaus_plexippus_OGS213906, [10] 11 Danaus_plexippus_OGS213908, [11] 12 Heliconius_melpomene_010424, [12] 13 Heliconius_melpomene_006069, [13] 14 Bombyx_mori_GA012688, [14] 15 Bombyx_mori_GA004616, [15] 16 Manduca_sexta_OGS205212, [16] 17 Manduca_sexta_OGS211687, [17] 18 Plutella_xylostella_007715, [18] 19 Plutella_xylostella_010704, [19] 20 Plutella_xylostella_010231; TREE Imported_tree_1 = ((7:0.40448399,(1:0.25141052,2:0.2185826)0.9940:0.1764348)0.5120:0.06384265,(5:0.28140505,(20:0.11172146,((15:0.08065551,16:0.02116249)0.8840:0.04368468,(13:0.23174703,(11:0.11106685,10:0.0)0.8620:0.02256591)0.9830:0.09853659)0.8500:0.05640445)0.9970:0.29499691)0.9960:0.14848557,(4:0.8934158,(8:0.47676732,(3:0.28092727,(6:0.23596004,(14:0.07310436,((18:0.01289837,19:0.20252128)1.0000:0.09800715,(17:0.10068199,(9:0.04766815,12:0.07828693)0.9770:0.05302879)0.3560:0.01894327)0.2110:0.0326161)1.0000:0.18579518)0.9080:0.09128257)0.8030:0.09816206)1.0000:0.27872934)1.0000:0.29439873)[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1471520479506; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4112267223000648728; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8924574440233117738; mqVersion 310; checksumv 0 3 1673674749 null getNumChars 1206 numChars 1206 getNumTaxa 20 numTaxa 20 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.70058588514702E14 sumSquares 1.70058588514702E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 649; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4112267223000648728 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 01569caceaa15; toggleUseWeights off; endTell; setAssignedID 1321.1471507400343.1451687540952329633; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 577; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.interchange; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.ornamental.CircularTree.CircularTree; tell It; setEdgeWidth 6; getEmployee #mesquite.ornamental.NodeLocsCircular.NodeLocsCircular; tell It; branchLengthsToggle off; toggleScale on; endTell; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8924574440233117738 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1266 577; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;