#NEXUS [written Mon Feb 06 18:58:44 CET 2017 by Mesquite version 3.10 (build 765) at WE11C361/157.193.167.217] BEGIN TAXA; DIMENSIONS NTAX=20; TAXLABELS Psammothidium_MIC540b Psammothidium_SHIRKbis7 Achnanthidium_SPITSM2AplusB12 Achnanthidium_MIC1052b Achnanthidium_MIC1053 Achnanthidium_MIC1061 Achnanthidium_MIC1068a Achnanthidium_MIC1072 Achnanthidium_SPITSM2AplusB14 Achnanthidium_SPITSM2AplusB32 Achnanthidium_SPITSM2AplusB38 Achnanthidium_SPITSEBAA22 Achnanthidium_SPITS13GARmoss3 Achnanthidium_SPITS13GARmoss8 Achnanthidium_SPITSM2AplusB18a Achnanthidium_SPITSM2AplusB26 Achnanthidium_SPITSM310 Achnanthidium_SPITSM315 Achnanthidium_SPITSN312 Achnanthidium_AT196Gel02 ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=895; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = N; MATRIX Psammothidium_MIC540b AAGCATATAAWTAAGCGGAGGAAAAGAAACTAACCAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGCGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTCTTGCGTTACTGGCCGGGCCAAGTCCCTTGGAACAGGGCAGCTGAGAGGGTGAAACTCCCGTCCGCCTGGCCTTGTGAGCGAGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAAGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCGTTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGCACAGGGAGTTGACCTGTGCATGTCGCGGTCGGTCCGGCTGAGGTTGTCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGGCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAT--TTTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGAATC--AATTTTATCAGGTAAAG Psammothidium_SHIRKbis7 AAGCATATAWWTWAGCGGAGGAAAAGAAACTAACCAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCACCTTGTGAATCTGCGCATTAGCGCCGAATTGTGGTCTAGAGACTCTTGCGTTACTGGCCGGGCCAAGTCCCTTGGAACAGGGCAGCTGAGAGGGTGAAACTCCCGTCCGCCTGGCCTCGTGAGCGAGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAAAGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGTTCGCTTGCGGTCGGGGCGCTGTGGCCAGCGTTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGGTTCGGCTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGGCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAATGCATTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTCTCAATTTTATCAGGTAAAN Achnanthidium_SPITSM2AplusB12 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTCTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGGTCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_MIC1052b AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTATTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCATGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_MIC1053 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTATTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCATGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_MIC1061 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TYTGCGCCGAATTGTGGTCTAGAGACTATTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCATGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAN Achnanthidium_MIC1068a AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTATTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCATGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_MIC1072 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTATTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCATGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSM2AplusB14 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTCTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGGGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCAAGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGACCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTTGATCCGACTGAGGTTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSM2AplusB32 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTCTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGGGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCAAGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGACCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTTGATCCGACTGAGGTTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSM2AplusB38 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTCTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGGGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCAAGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGACCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTTGATCCGACTGAGGTTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSEBAA22 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TCTGCGCCGAATTGTGGTCTAGAGACTCTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGGGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTTTTGAGCAAGTGTCAACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGACCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTTGATCCGACTGAGGTTGACGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITS13GARmoss3 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITS13GARmoss8 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSM2AplusB18a AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSM2AplusB26 AAGCATAWWATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSM310 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSM315 AAGCATATAATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_SPITSN312 AAGCATAWWATTAAGCGGAGGAAAAGAAACTAACTAGG-ATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGTCTTGAAACACGGACCAAGGAGTTTAACATATGTGCGAGTACAGGGGTGTCAAACCCCGGTGCGCAATGAAAGTAACAGTGGCTGGAAA--TCTGCACAGTCCGCCGGCCATAATCCCTCGGGAGAACGGTCTGAGTGTGAGCATACATGTTGAGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACTATCTAGTAGCTGGTTCCCTCCGAAATTTCCCTCAGGATAGCTGTGATCGATTC--AATTTTATCAGGTAAAG Achnanthidium_AT196Gel02 NNNNNNNTAATTAAGCGGAGGAAAAGAAACTAACTAGGGATTCCCTCAGTAAGGGCGACTGAAGCGGGAATAGCTCATCTTGTGAATCTGCGC-TTTGCGCCGAATTGTGGTCTAGAGACTTTTGCATTACTGGCCGGGCCAAGTCCTCTGGAATGAGGCAGCTGAGAGGGTGACACTCCCGTCCGCCTGGCCTCTTGAGCAATTGTCCACGAGTCGAGTTGTTTGGGATTGCAGCTCAAAGCGGGTGGTAAATTCCATCTAAGGCTAAATATTGGTGGGAGACCGATAGCGTACAAGTACCGTGAGGGAAAGATGCAAAGAACTTTGAAAAGAGAGTTAAAGAGTACCTGAAATTGCTGAAACGGAAGCGAAGGAAACCAGTGTCAGCTGCGTCATACTTCCCCGCTCGCTTGCGGTCGGGGCGCTGTGGCCAGCATTGTCAGGCTTGGCTGGATTGGCCGGAACCGCGTACAGGGAGTTGACCTGTGCATGTCGCGGTCGATCCGACTGAGGTTGGCGAAATGGTTTTCTTTACCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ; END; BEGIN TREES; Title 'Trees from "LSU_tree.nex"'; ID 015a1493704a3; LINK Taxa = Taxa; TRANSLATE [0] 1 Psammothidium_MIC540b, [1] 2 Psammothidium_SHIRKbis7, [2] 3 Achnanthidium_SPITSM2AplusB12, [3] 4 Achnanthidium_MIC1052b, [4] 5 Achnanthidium_MIC1053, [5] 6 Achnanthidium_MIC1061, [6] 7 Achnanthidium_MIC1068a, [7] 8 Achnanthidium_MIC1072, [8] 9 Achnanthidium_SPITSM2AplusB14, [9] 10 Achnanthidium_SPITSM2AplusB32, [10] 11 Achnanthidium_SPITSM2AplusB38, [11] 12 Achnanthidium_SPITSEBAA22, [12] 13 Achnanthidium_SPITS13GARmoss3, [13] 14 Achnanthidium_SPITS13GARmoss8, [14] 15 Achnanthidium_SPITSM2AplusB18a, [15] 16 Achnanthidium_SPITSM2AplusB26, [16] 17 Achnanthidium_SPITSM310, [17] 18 Achnanthidium_SPITSM315, [18] 19 Achnanthidium_SPITSN312, [19] 20 Achnanthidium_AT196Gel02; TREE con_50_majrule = ((1:0.007038946,2:0.01143195):0.01320823,((9:0.001086415,10:0.001096842,11:0.001089876,12:0.001092848):0.00594653,((4:0.00109435,5:0.001089069,6:0.001093675,7:0.001080346,8:0.002324203):0.004139271,(3:0.002411361,(13:0.001088265,14:0.001095815,15:0.001098088,16:0.001091168,17:0.001096126,18:0.001087245,19:0.00108787,20:0.001337031):0.005546386):0.003937358):0.002498866):0.01320823)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 895; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 895; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 895; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1486403924222; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3140788656961169078; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 607338006322476654; mqVersion 310; checksumv 0 3 721560270 null getNumChars 895 numChars 895 getNumTaxa 20 numTaxa 20 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 359496.0 sumSquares 2.7670116110564327E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 471; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 972; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3140788656961169078 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015a1493704a3; toggleUseWeights off; endTell; setAssignedID 1155.1486403896204.4868200655141784483; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1449 900; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #607338006322476654 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1449 900; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;