#NEXUS [written Fri Oct 28 08:05:47 CAT 2016 by Mesquite version 3.10 (build 765) at B242-DeMaayer/146.141.42.122] BEGIN TAXA; DIMENSIONS NTAX=15; TAXLABELS Geobacillus_sp._10 'Geobacillus sp. C56-T2' Geobacillus_sp._CAMR12739 Geobacillus_sp._GHH01 Geobacillus_sp._Et74 Geobacillus_sp._MAS1 Geobacillus_sp._PSS2 Geobacillus_sp._Y412MC52 Geobacillus_sp._Y412MC61 'G. thermocatenulatus GS-1' G._thermoglucosidans_DSM2542T G._thermoglucosidans_TNO09.20 G._thermoglucosidans_Y4.1MC1 B._thuringiensis_ATCC_35646 'Campylobacter jejuni 81-176 ' ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=759; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Geobacillus_sp._10 ---MKLAIDGGTPVRESFLSYGQQWIDEEDIEAVVETLRSPFITQGPKIEQFEEAIARYVGAKYAVAFANGTAALHGACFAAGISPGDEVVTTPITFAASANCVLYVGGTPVFVDIDEKTYNIDPNLIEEAITS--RTKAIIAVDFTGQPADLDPIREIARKYGLVFIEDAAHSLGACYKGKKVGSLADMTMFSFHPVKPITTGEGGVIVTDHEEYYLKLKRFRTHGITT--ENVRKNEGPWYYEMVDLGYNYRMTDVQAALGLSQLTKLDAFVQKRREIAAMYHEAFSHISGVRIPYQLPYVDSSWHLYVLQLQLEHFRVGRKEILAALRAENIGVHVHYIPVYFHPYYQQLGYKKGICPVAEKWYEGALTIPLFPKMSQYDIKTVIEGVNKVLSFYRKMI-------KDIQIGHRLIGPNHKPFVIAEMSGNHNQSLERALAIVEAAARAGVDAVKLQTYTADTMTLDIDEGDFFIDDPDNLWQGNSLYKLYQAAYTPWEWHEPIFRRCKELGLIAFSTPFDETAVEFLEELNVPAYKIASFENTDLPLIRKVAETGKPLIISTGMATAAELDETVRAAREAGCQDLILLKCTSTYPATPENSNLATIPHMRELFQCQVGLSDHTMGIGVSVAAVALGATVIEKHFTLSRAEGGVDAAFSMEPHEMADLVIETERAWQSIGGIQYGPTKAEEASLKHRRSLYIVRDMRAGETLTKENVRAIRPGNGLPPKYFDQLLGKTVKRDVKKGTPVAWDLLL- 'Geobacillus sp. C56-T2' -----------MKKRESFLSYGQQWITDDDIEAVVDVLKSPYLTQGPKIQEFERKVADYVGAKYAVAFSNGTAALHGACFAAEIGEGDEAITTPITFAATANAVLYCGGKPVFADIDDRTYNIDPKEIRKHITP--NTKAIIPVDFTGQPADMDAIMEIANEYGLIVIEDGAHSLGAEYKGRKVGTLAHMTMFSFHPVKPVTTAEGGVIVTDSAEYYEKLKRFRSHGIIK--YNLSRDEGPWYYEMVDLGYNYRMTDLQAALGLSQMDKLDRFIERRREIANMYNEALKTMDSVILPKRLEGTQSGWHLYVLQLKLDKLKRSRREIFESLRAENIGVHVHYIPVYWHPYYQKLGYRRGICPKAEHWYEQALTLPIFPKMTDKDVNDVIEAVKRNIVMS-----------DGIRIGDRWIGINRKPFIIAEMSGNHNQSLERALKIVDLAAEAGVDAVKLQTYTPDTMTLDIHTGEFFIESETNLWKGQSLYNLYKEAYTPWEWHEAIFERCKKHGLLAFSSPFDETAVDFLETLNVPAYKIASFENIDIPLIKKVAATGKPVIISTGMATVAELDEAVQAVRSQGNNQIILLKCTSTYPATPENSNIVTIPHMRQLFGVEVGLSDHTMGIGTAVAAVALGATVIEKHFTTSRVEGGVDAAFSLEPHEMKMLVEETERAWLSLGMIHYGPTNAEKPSLEHRRSLYIAEDLKAGDLITKENVRAIRPGHGLPPKYYDVVLGKAVKKDVKKGTPLSWDILL- Geobacillus_sp._CAMR12739 ---MKLAIHGGTPVRESFLSYGQQWIDEDDIEAVVETLRSPFITQGPKIQQFEESIARYAGAKYAVAFANGTAALHGACFAAGISRGDEVITTPITFAASANCVLYVGGTPVFVDIDEKTYNIDPSRIEKAITS--RTKAIIAVDFTGQPADLDPIREIARKYGLVFIEDAAHSLGSCYKGKKVGSLADMTMFSFHPVKHITTGEGGIIVTDDEEYYHKLKRFRTHGIIT--ENVNNDEGPWYYEMVDLGYNYRMTDLQAALGLSQLTKLDAFVQKRREIAAIYNEAFSNVPGVRIPYQLPYVDSSWHLYVLQLQLGHFRVGRKEIFEALRAENIGVHVHYIPVYFHPYYQRLGYKKGICPVAEKWYEGALTIPIFPKMSEYDIRTVIEGVNKVLSFYRKMI-------KDIQIGHRLIGPNHKPFIIAEMSGNHNQSLERALAIVEAAAQAGVDAVKLQTYTADTMTLDMDEGEFFIDDPENLWRGNSLYKLYQEAYTPWEWHEPIFRRCNELGLIAFSTPFDETAVEFLEELNVPAYKIASFENTDLPLIRKVAATGKPLIISTGMATAAELDETVRAARESGCRDLILLKCTSTYPATPENSHLATIPHMRELFQCQVGLSDHTMGIGVSVAAVAFGATVIEKHFTLSRAEGGVDAAFSMEPHEMAALVIETERAWQSIGHVQYGSTDAEKASLKHRRSLYIVQDMKAGETLTKENVRAIRPGNGLPPKYFDQLLGKTVKRDVKKGTPVTWDLLW- Geobacillus_sp._GHH01 ---MKLAIHGGTPVRESFLSYGQQWIDEEDIQAVVETLRSPLITQGPRIQQFEEAVARYVGAKYAVAFANGTAALHGACYAAGISQGDEVITTPITFAASANCVRYVGGKPVFVDIDENTYNIDPSLIEKAITP--RTKAIIAVDFTGQPADLDPIREIAQKYGLVFIEDAAHSLGSCYKGKKVGSLADMTMFSFHPVKHITTGEGGIIVTDDEEYYHKLKRFRTHGIIT--ENVNNDEGPWYYEMVDLGYNYRMTDLQAALGLSQLTKLDAFVQKRREIAAIYNEAFSNVPGVCIPYQLPYVDSSWHLYVLQLQLEHFRVGRKEIFEALRAENIGVHVHYIPVYFHPYYQQLGYKKGICPIAEKWYEGALTIPIFPKMSEYDIRTVIEGVNKVLSFYRKMI-------QDIQIGHRLIGPNHKPFIIAEMSGNHNQSLERALAIVEAAAQAGVDAVKLQTYTADTMTLDMDEGDFLIDDPENLWRGNSLYKLYQEAYTPWEWHKPIFQRCNELGLIAFSTPFDETAVEFLEELNVPAYKIASFENTDLPLIRKVAETGKPLIISTGMATAAELDETVRAAREAGCQDLILLKCTSTYPATPENSHLATIPHMRELFQCQVGLSDHTMGIGVSVAAVALGATVIEKHFTLSRAEGGVDAAFSMEPHEMAALVIETERAWQSIGHVQYGPTDAEKASLKHRRSLYIVRDMKAGETLTKENVRAIRPGNGLPPKYFDQLLGKTVKRDVKKGTPVTWDLLW- Geobacillus_sp._Et74 ---MKLAIDGGTPVRESFLSYGQQWIDEEDIEAVVKTLRSPFITQGPKIEQFEEAIARYVGAKYAVAFANGTAALHGACFAAGISPGDEVVTTPITFAASANCVLYVGGTPVFVDIDEKTYNIDPNLIEEAITS--RTKAIIAVDFTGQPADLDPIREIARKYGLVFIEDAAHSLGACYKGKKVGSLADMTMFSFHPVKPITTGEGGVIVTDHEEYYLKLKRFRTHGITT--ENVRKNEGPWYYEMVDLGYNYRMTDVQAALGLSQLTKLDAFVQKRREIAAMYHEAFSRIPGVRIPYQLPYVDSSWHLYVLQLQLENFRVGRKEIFEALRAENIGVHVHYIPVYFHPYYQQLGYKKGICPVAEKWYEAVLTIPLFPKMSEYDIRTVMEGVNKVLSFYRKMI-------KDIQIGHRLIGPNHKPFIIAEMSGNHNQSLERALAIVEAAAQAGVDAVKLQTYTADTMTLDIDEGDFFIDDPDSLWRGNSLYKLYQEAYTPWEWHEPIFRRCQELGLLAFSTPFDETAVDFLEELHVPAYKIASFENTDLPLIRKVASTGKPLIISTGMATAAELDETVRAARESGCQDLILLKCTSTYPATPENSNLATIPHMRELFQCQVGLSDHTMGVGVSVAAVALGATVIEKHFTLSRTEGGVDAAFSMEPHEMASLVVETERAWQSIGRVQYGPTKTEEASLKHRRSLYIVRDMKAGETLTKETVRAIRPGSGLPPKYFDQLLGKTVKRDVKKGTPVTWDLLL- Geobacillus_sp._MAS1 ---MKLAIHGGTPVRESFLSYGQQWIDEDDIEAVVETLRSPFITQGPKIQQFEESIARYAGAKYAVAFANGTAALHGACFAAGISRGDEVITTPITFAASANCVLYVGGTPVFVDIDEKTYNIDPSRIEKAITS--RTKAIIAVDFTGQPADLDPIREIARKYGLVFIEDAAHSLGSCYKGKKVGSLADMTMFSFHPVKHITTGEGGIIVTDDEEYYHKLKRFRTHGIIT--ENVNNDEGPWYYEMVDLGYNYRMTDLQAALGLSQLTKLDAFVQKRREIAAIYNEAFSNVPGVRIPYQLPYVDSSWHLYVLQLQLGHFRVGRKEIFEALRAENIGVHVHYIPVYFHPYYQRLGYKKGICPVAEKWYEGALTIPIFPKMSEYDIRTVIEGVNKVLSFYRKMI-------KDIQIGHRLIGPNHKPFIIAEMSGNHNQSLERALAIVEAAARAGVDAVKLQTYTADTMTLDMDEGDFFIDDPDNLWQGNSLYKLYQEAYTPWEWHEPIFQRCQELGLIAFSTPFDETAVEFLEELNVPAYKIASFENTDLPLIRKVAATGKPLIISTGMATAAELDETVRAARESGCRDLILLKCTSTYPATPENSHLATIPHMRELFQCQVGLSDHTMGIGVSVAAVAFGATVIEKHFTLSRAEGGVDAAFSMEPHEMAALVIETERAWQSIGHVQYGPTDAEKASLKHRRSLYIVQDMKAGETLTKENVRAIRPGNGLPPKYFDQLLGKTVKRDVKKGTPVTWDLLW- Geobacillus_sp._PSS2 -----------MKKRESFLSYGQQWITDDDIEAVVDVLKSPYLTQGPKIQEFERKVADYVGAKYAVAFSNGTAALHGACFAAEIGEGDEAITTPITFAATANAVLYCGGKPVFADIDDRTYNIDPKEIRKHITP--NTKAIIPVDFTGQPADMDAIMEIANEYGLIVIEDGAHSLGAEYKGRKVGTLAHMTMFSFHPVKPVTTAEGGVIVTDSAEYYEKLKRFRSHGIIK--YNLSRDEGPWYYEMVDLGYNYRMTDLQAALGLSQMDKLDRFIERRREIANMYNEALKTMDSVILPKQLEGTQSGWHLYVLQLKLDKLKRSRREIFESLRAENIGVHVHYIPVYWHPYYQKLGYRRGICPKAEHWYEQALTLPIFPKMTDKDVNDVIEAVKRTIVMS-----------DGIRIGDRWIGINRKPFIIAEMSGNHNQSLERALKIVDLAAEAGVDAVKLQTYTPDTMTLDIHTGEFFIESETNLWKGQSLYNLYKEAYTPWEWHEAIFERCKKHGLLAFSSPFDETAVDFLETLNVPAYKIASFENIDIPLIKKVAATGKPVIISTGMATVAELDEAVQAVRSQGNNQIILLKCTSTYPATPENSNIVTIPHMRQLFGVEVGLSDHTMGIGTAVAAVALGATVIEKHFTTSRVEGGVDAAFSLEPHEMKMLVEETERAWLSLGMIHYGPTNAEKPSLEHRRSLYIAEDLKAGDLITKENVRAIRPGHGLPPKYYDVVLGKAVKKDVKKGTPLSWDILL- Geobacillus_sp._Y412MC52 ---MKLAIHGGTPVRESFLSYGQQWIDQEDIQAVVETLRSPLITQGPKIQQFEEAVARYVGAKYAVAFANGTAALHAACHAAGISQGDEVITTPITFAASANCVRYVGGKPVFVDIDENTYNIDPSLIEKAITP--RTKAIIAVDFAGQPADLDPIREIAKKYGLVFIEDAAHSLGACYKGKKVGSLADMTMFSFHPVKTITTGEGGMIVTDDEEYYHKLKLFRTHGITT--VGKN--EGPWYYEMVDLGYNYRMTDLQAALGLSQLAKLDAFVQKRREIAAIYHEVFSRIPGVRIPYQLPYVDSGWHLYVLQLQVEHFRVGRKEIFEALRAENIGVHVHYIPVYFHPYYQRLGYKKGICPVAEKWYEGALTIPIFPKMSEYDIRTVIEGVNKVLSFYRKMI-------KDIQIGHRLIGRNHKPFIIAEMSGNHNQSLERALAIVEAAARAGVDAVKLQTYTADTMTLDIDEGDFFIDDPDNLWQGNSLYKLYQEAYTPWEWHEPIFQRCKELGLIAFSTPFDETAVEFLEELNVPAYKIASFENTDLPLIRKVAATGKPLMISTGMATAAELDETVRAARESGCHDLILLKCTSTYPATPENSHLATIPHMRELFQCQVGLSDHTMGIGVSVAAVALGATVIEKHFTLSRAEGGVDAAFSMEPHEMAALVTETERAWQSIGGIQYGPTKAEEASLKHRRSLYIVRDMRAGETLTKENVRAIRPGNGLPPKYFDQLLGKTVKRDVKKGTPVTWDLLW- Geobacillus_sp._Y412MC61 ---MKLAIHGGTPVRESFLSYGQQWIDQEDIQAVVETLRSPLITQGPKIQQFEEAVARYVGAKYAVAFANGTAALHAACHAAGISQGDEVITTPITFAASANCVRYVGGKPVFVDIDENTYNIDPSLIEKAITP--RTKAIIAVDFAGQPADLDPIREIAKKYGLVFIEDAAHSLGACYKGKKVGSLADMTMFSFHPVKTITTGEGGMIVTDDEEYYHKLKLFRTHGITT--VGKN--EGPWYYEMVDLGYNYRMTDLQAALGLSQLAKLDAFVQKRREIAAIYHEVFSRIPGVRIPYQLPYVDSGWHLYVLQLQVEHFRVGRKEIFEALRAENIGVHVHYIPVYFHPYYQRLGYKKGICPVAEKWYEGALTIPIFPKMSEYDIRTVIEGVNKVLSFYRKMI-------KDIQIGHRLIGRNHKPFIIAEMSGNHNQSLERALAIVEAAARAGVDAVKLQTYTADTMTLDIDEGDFFIDDPDNLWQGNSLYKLYQEAYTPWEWHEPIFQRCKELGLIAFSTPFDETAVEFLEELNVPAYKIASFENTDLPLIRKVAATGKPLMISTGMATAAELDETVRAARESGCHDLILLKCTSTYPATPENSHLATIPHMRELFQCQVGLSDHTMGIGVSVAAVALGATVIEKHFTLSRAEGGVDAAFSMEPHEMAALVTETERAWQSIGGIQYGPTKAEEASLKHRRSLYIVRDMRAGETLTKENVRAIRPGNGLPPKYFDQLLGKTVKRDVKKGTPVTWDLLW- 'G. thermocatenulatus GS-1' ---MKLAIHGGTPVRESFLSYGQQWIDEEDIQAVVETLRGPLITQGPKIQQFEEAVARYVGAKYAVAFANGTAALHGACYAAGISQGDEVITTPITFAASANCVRYVGGKPVFVDIDENTYNIDPSLIEKAITP--RTKAIIAVDFAGQPADLDPIREIAKKYGLVFIEDAAHSLGACYKGKKVGSLADMTMFSFHPVKTITTGEGGMIVTDDEEYYHKLKLFRTHGITT--VGKN--EGPWYYEMVDLGYNYRMTDLQAALGLSQLAKIDAFVQKRREIAAIYDEAFSRIPGVRIPYQLPYVDSGWHLYVLQLQVEHFRVGRKEIFEALRAENIGVHVHYIPVYFHPYYQRLGYRKGICPVAEKWYEGALTIPIFPKMSEYDIQTVIEGVNKVLSFYRTMI-------KDIQIGHRLIGRNHKPFIIAEMSGNHNQSLERALAIVEAAAQAGVDAVKLQTYTADTMTLDMDEGDFFIDDPENLWRGNSLYKLYQEAYTPWEWHKPIFQRCKELGLIAFSTPFDETAVEFLEELNVPAYKIASFENTDLPLIRKVAATGKPLMISTGMATAAELDETVRAARESGCHDLILLKCTSTYPATPENSHLATIPHMRELFQCQVGLSDHTMGIGVSVAAVALGATVIEKHFTLSRAEGGVDAAFSMEPHEMAALVTETERAWQSIGHVQYGPTDAEKASLKHRRSLYIVRDMKAGETLTKENVRAIRPGNGLPPKYVDQLLGKTVKRDVKKGTPVTWDLLW- G._thermoglucosidans_DSM2542T -----------MKKRESFLSYGQQWIMDEDIEAVVTVLKSPFLTQGPKIHEFERKVADYVGAKYAVAFSNGTAALHGACFAAGIGEGDEVITTPITFAATSNAVLYCGGKPVFADIDDRTYNIDPKEIRKHITP--NTKAIIPVDFTGQPADMDAIMEIANEHGLVVIEDGAHSLGAEYKGRKVGMLAHMTMFSFHPVKPVTTAEGGVIVTDSEEYYEKLKRFRSHGIIK--HNLSRDEGPWYYEMVDLGYNYRMTDLQAALGISQMDKLDCFIERRREIANMYNEAFKTMDSVIVPMQLERTQSGWHLYVLQLKLDKLKRSRREIFESLRAENIGVHVHYIPVYWHPYYQKLGYRKGICPKAEQWYEQALTLPIFPKMTDEDVNDVIEAVKRNVYMS-----------KDIKIGNRLIGTNHKPFIIAEMSGNHNQSLERALKIVDLAAEAGVDAVKLQTYTPDTMTLDIHTGEFFIKSETNLWKGQSLYNLYKEAYTPWEWHEAIFERCKKHGLLAFSSPFDETAVDFLETLNVPAYKIASFENVDIPLIKKVAATGKPVIISAGMATVAELYEAVQAVRSEGNDQIILLKCTSTYPATPENSNLATIPHMRELFGVEVGLSDHTMGIGTAVAAVALGATVIEKHFTTSRAEGGVDAAFSLEPHEMKMLVEETERAWLSLGMIHYGPTNAEKPSLEHRRSLYVTEDLKAGDIITKENVRAIRPGHGLPPKYYDLVLGKAVKKDVKKGTPLSWDILL- G._thermoglucosidans_TNO09.20 -----------MKKRESFLSYGQQWIMDEDIEAVVTVLKSPFLTQGPKIHEFERKVADYVGAKYAVAFSNGTAALHGACFAAGIGEGDEVITTPITFAATSNAVLYCGGKPVFADIDDRTYNIDPKEIRKHITP--NTKAIIPVDFTGQPADMDAIMEIANEHGLVVIEDGAHSLGAEYKGRKVGMLAHMTMFSFHPVKPVTTAEGGVIVTDSEEYYEKLKRFRSHGIIK--HNLSRDEGPWYYEMVDLGYNYRMTDLQAALGISQMDKLDCFIERRREIANMYNEAFKTMDSVIVPMQLERTQSGWHLYVLQLKLDKLKRSRREIFESLRAENIGVHVHYIPVYWHPYYQKLGYRKGICPKAEQWYEQALTLPIFPKMTDEDVNDVIEAVKRNVYMI-----------QIGNR---KIGKSEKPFIIAEMSGNHNQSLERALKIVDLAAEAGVDAVKLQTYTPDTMTLDIHTGEFFIKSETNLWKGQSLYNLYKEAYTPWEWHEAIFERCKKHGLLAFSSPFDETAVDFLETLNVPAYKIASFENIDIPLIKKVAATGKPVIISAGMATVAELYEAVQAVRSEGNDQIILLKCTSTYPATPENSNLATIPHMRELFGVEVGLSDHTMGIGTAVAAVALGATVIEKHFTTSRAEGGVDAAFSLEPHEMKMLVEETERAWLSLGMIHYGPTNAEKPSLEHRRSLYVTEDLKAGDIITKENVRAIRPGHGLPPKYYDLVLGKAVKKDVKKGTPLSWDILL- G._thermoglucosidans_Y4.1MC1 -----------MKKRESFLSYGQQWITDEDIEAVVTVLKSPFLTQGPKIHEFERKVADYVGAKYAVAFSNGTAALHGACFAAGIGEGDEVITTPITFAATSNAVLYCGGKPVFADIDDRTYNIDPKEIRKHITP--NTKAIIPVDFTGQPADMDAIMEIANEHGLVVIEDGAHSLGAEYKGRKVGMLAHMTMFSFHPVKPVTTAEGGVIVTDSEEYYEKLKRFRSHGIIK--HNLSRDEGPWYYEMVDLGYNYRMTDLQAALGISQMDKLDCFIERRREIANMYNEAFKTMDSVIVPMQLERTQSGWHLYVLQLKLDKLKRSRREIFESLRAENIGVHVHYIPVYWHPYYQKLGYRKGICPKAEQWYEQALTLPIFPKMTDEDVNDVIEAVKRNVYMI-----------QIGNR---KIGKSEKPFIIAEMSGNHNQSLERALKIVDLAAEAGVDAVKLQTYTPDTMTLDIHTGEFFIKSETNLWKGQSLYNLYKEAYTPWEWHEAIFERCKKHGLLAFSSPFDETAVDFLETLNVPAYKIASFENIDIPLIKKVAATGKPVIISAGMATVAELYEAVQAVRSEGNDQIILLKCTSTYPATPENSNLATIPHMRELFGVEVGLSDHTMGIGTAVAAVALGATVIEKHFTTSRAEGGVDAAFSLEPHEMKMLVEETERAWLSLGMIHYGPTNAEKPSLEHRRSLYVTEDLKAGDIITKENVRAIRPGRGLPPKYYDLVLGKAVKKDVKKGTPLSWDILL- B._thuringiensis_ATCC_35646 MVRGILGMHGGKPVRETYLPYGQQQIDEYDIQAVVDVLKGDFLTTGPMVQQFEEAIAKYVGAKYAVSFSNGTAALHAACYAAGITEGDEVITTPMTFVASANCILYQGGKPVFADIDNGTYNISPKSIEEKITN--KTKAIIPVHFTGQPVELEEIQKIAKENNLIIIEDAAHALGATYKNKKIGSIGDMTMFSFHPVKHITTGEGGVITTNNPLFYEKLFQFRTHGIEKNPRNLLENHGPWYYEMQFLGYNYRITDIQAALGLSQLNKLDSFIKIRKKYVDIYNKEFSCLSEIIIPKQLPQTDSSWHLYIIRLNTKLLKCNRKEVYEALQRENIGVNVHYIPVHLQPFYQKLGYGKGICPQAENVYEEIITLPLFPKMTEADVWDVIQAVRKVLSFYRVAKNMKVKKMSNVYIGGREIGNSLPPFIIAEMSGNHNQSLDRALKIVEAAAEAGAQGFKIQTYTPDTMTLNIENGDFSIHDTKSLWKGKSLYHLYKEAYTPWEWHKPIFDRCIELGMIPFSTPFDETAVDFLETLNVSCYKIASFENTDIPLIRKVAATGKPIIISTGMASIAELDETVRAAREEGCKELILLKCTSTYPASPKSTNIVTIPHMKELFKCQVGLSDHTLGVGVSVASVAFGATVIEKHLTLSRLDGGVDAKFSMEPAEFKLLVSETEKAWESLGNVYYGPTDIEKDSLKFRRSLYVVENIKAGEFFTNENVKAIRPGNGLLPKHISKIIGKKANKDIEKGTPVSWDLI-- 'Campylobacter jejuni 81-176 ' -----------------MITYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYIGVKHACVLNSATSALHLAYTALGIK-EKIVLTTPLTFAATANAALIAGAKVEFIDIKNDGNIDEKKLEARLVKNSTDIGAISVVDFGGNSVEMDEISNLAKKYNIPLIDDASHALGSEYKGKKVGSMADLSIFSFHPVKPITTFEGGAVVSNNKELISKIKLLRSHGIVK--------KRLWDSDMIELGYNYRLSDVACALGINQLKKLDHNLEKREEITSFYDKEFEKNHYFSTIKIKDYKKSSRHLYPILLFPEFYCQ-KEELFESLLHAGIGVQVHYKPTYEFSFYKKLLG-EIRLQNADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGY---------CGMQIGNFNTDKKVFIIAELSANHAGSLEMALKSIKAAKKAGADAIKIQTYTPDSLTLNSDKEDFIIKG--GLWDKRKLYELYESAKTPYEWHSQIFETAQNEGILCFSSPFAKEDIEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELFKICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAPVMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDEKALKNRVFARSLYASKDIKKGEIFSEENVKSVRPSFGLHPKFYQELLGKKASKDIEFGDALKESDFR- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 759; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 15; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 759; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 759; END; BEGIN TREES; Title 'Trees from "Supp Fig S2 PseCI phylogeny ML update.nex"'; ID 015809e4074b25; LINK Taxa = Taxa; TRANSLATE [0] 1 Geobacillus_sp._10, [1] 2 'Geobacillus sp. C56-T2', [2] 3 Geobacillus_sp._CAMR12739, [3] 4 Geobacillus_sp._GHH01, [4] 5 Geobacillus_sp._Et74, [5] 6 Geobacillus_sp._MAS1, [6] 7 Geobacillus_sp._PSS2, [7] 8 Geobacillus_sp._Y412MC52, [8] 9 Geobacillus_sp._Y412MC61, [9] 10 'G. thermocatenulatus GS-1', [10] 11 G._thermoglucosidans_DSM2542T, [11] 12 G._thermoglucosidans_TNO09.20, [12] 13 G._thermoglucosidans_Y4.1MC1, [13] 14 B._thuringiensis_ATCC_35646, [14] 15 'Campylobacter jejuni 81-176 '; TREE tree1 = (((((3:0.00484971,6:0.00389064)0.991:0.01347526,(4:0.01268017,(10:0.00682056,(9:0.0,8:0.0)1.0:0.01952151)0.987:0.0234751)0.717:0.01311082)0.69:0.0114751,(1:0.02304997,5:0.02626211)0.995:0.02257172)1.0:0.117768,((2:0.00141931,7:0.0013836)1.0:0.03501482,(11:0.00119251,(12:0.00000007,13:0.00280951)0.993:0.01167829)1.0:0.02329964)1.0:0.17600778)0.703:0.08147126,14:0.22351567,15:0.96853845); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1477634747147; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1779915468279616794; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 9122642926049044387; mqVersion 310; checksumv 0 3 2572521112 null getNumChars 759 numChars 759 getNumTaxa 15 numTaxa 15 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.61850540977284E14 sumSquares 1.61850540977284E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #9122642926049044387 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 392; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;