#NEXUS
[written Thu Oct 27 07:30:04 CAT 2016 by Mesquite  version 3.10 (build 765) at B242-DeMaayer/146.141.42.122]

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=18;
	TAXLABELS
		G._kaustophilus_HTA426 G._kaustophilus_DSM_7263T Geobacillus_sp._MAS1 Geobacillus_sp._10 Geobacillus_sp._GHH01 Geobacillus_sp._PSS1 Geobacillus_sp._CAMR12739 Geobacillus_sp._Y412MC52 Geobacillus_sp._Y412MC61 'G. thermocatenulatus GS-1' 'Geobacillus sp. Et7/4' Geobacillus_sp._WSUCF1 'Geobacillus sp. C56-T2' Geobacillus_sp._PSS2 G._thermoglucosidans_TNO09.20 'G. thermoglucosidans C56-YS93' G._thermoglucosidans_DSM_2542T G._thermoglucosidans_Y4.1MC1 
	;

END;


BEGIN CHARACTERS;
	LINK TAXA = Taxa;
	DIMENSIONS  NCHAR=90;
	FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = "  0 1";
	MATRIX
	G._kaustophilus_HTA426          000000000000000000000011111110111111100000000000000000000000000000000000000000000000000000
	G._kaustophilus_DSM_7263T       000000000000000000000011111110111111000000000000000000000000000000000000000000000000000000
	Geobacillus_sp._MAS1            000000000000000000000000000000000000011110000000000100000000000110000011101111100000111010
	Geobacillus_sp._10              000000000000000000000000000000000000011101110000000000000110001000000011100111100000111000
	Geobacillus_sp._GHH01           000000000000000000000000000000000000011110000000000100000000000110000011111111100000111000
	Geobacillus_sp._PSS1            111100011011100000000000000000000000000000000000000000000000000000000000000000000000000001
	Geobacillus_sp._CAMR12739       000000000010000000000000000000000000011101100000000000000110001000000011100111100000111010
	Geobacillus_sp._Y412MC52        000000000000000000000000000000000000011101110000000000000110001000000011100111100000111000
	Geobacillus_sp._Y412MC61        000000000000000000000000000000000000011101110000000000000110001000000011100111100000111000
	'G. thermocatenulatus GS-1'     000000000000000000000000000000000001011101110000000000000110001000000011100111100000000000
	'Geobacillus sp. Et7/4'         000000000000000000000000000000000000011100000000000000000000000001111111100111100000000000
	Geobacillus_sp._WSUCF1          111011111101100000000000000000000000000000000000000000000000000000000000000000000000000000
	'Geobacillus sp. C56-T2'        000000000000000000000000000000000000000000001111000111111110001000000011100110111001000000
	Geobacillus_sp._PSS2            000000000000000000000000000000000000000000001111000001111110001000000011100110111001000000
	G._thermoglucosidans_TNO09.20   000000100000000001000000000000000000000000001111111000000000000000000011100110100111000000
	'G. thermoglucosidans C56-YS93' 000000000000000000100000111111111100000000001110000000000000000000000000000000000001000000
	G._thermoglucosidans_DSM_2542T  000000000000000000100000000000000000000000001111000000000001110000000011100110100101000000
	G._thermoglucosidans_Y4.1MC1    000000100000000001000000000000000000000000001111111000000000000000000011100110100101000000

;

END;
BEGIN ASSUMPTIONS;
	TYPESET * UNTITLED   =  unord:  1 -  90;

END;

BEGIN MESQUITECHARMODELS;
	ProbModelSet * UNTITLED   =  'Mk1 (est.)':  1 -  90;
END;

Begin MESQUITE;
		MESQUITESCRIPTVERSION 2;
		TITLE AUTO;
		tell ProjectCoordinator;
		timeSaved 1477546204795;
		linkFile FGIUPGMAMatrixandTree.nex;
		getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa;
		tell It;
			setID 0 7007152996846052102;
			setID 1 4345499487121746310;
		endTell;
		getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters;
		tell It;
			setID 0 2535608153950362420;
			mqVersion 310;
			checksumv 0 3 1811393814 null  getNumChars 90 numChars 90 getNumTaxa 18 numTaxa 18   short true   bits 3   states 3   sumSquaresStatesOnly 2529.0 sumSquares 2529.0 longCompressibleToShort false usingShortMatrix true   NumFiles 2 NumMatrices 1 errorReportedDuringRun;
			mqVersion;
		endTell;
		getWindow;
		tell It;
			suppress;
			setResourcesState false false 100;
			setPopoutState 300;
			setExplanationSize 0;
			setAnnotationSize 0;
			setFontIncAnnot 0;
			setFontIncExp 0;
			setSize 1439 464;
			setLocation 8 8;
			setFont SanSerif;
			setFontSize 10;
			getToolPalette;
			tell It;
			endTell;
			desuppress;
		endTell;
		getEmployee  #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord;
		tell It;
			makeTreeWindow #4345499487121746310  #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker;
			tell It;
				suppressEPCResponse;
				setTreeSource  #mesquite.trees.StoredTrees.StoredTrees;
				tell It;
					setTaxa #4345499487121746310;
					setTreeBlockInt 0;
					setTreeBlockID 0158049b78b21;
					toggleUseWeights off;
				endTell;
				setAssignedID 1468.1477546058295.1164245884832573406;
				getTreeWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1339 392;
					setLocation 8 8;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
					endTell;
					setActive;
					getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator;
				tell It;
					suppress;
					setTreeDrawer  #mesquite.trees.SquareLineTree.SquareLineTree;
					tell It;
						setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard;
						tell It;
							branchLengthsToggle off;
							toggleScale on;
							toggleBroadScale off;
							toggleCenter on;
							toggleEven on;
							setFixedTaxonDistance 0;
						endTell;
						setEdgeWidth 4;
						showEdgeLines on;
						orientUp;
					endTell;
					setBackground White;
					setBranchColor Black;
					showNodeNumbers off;
					showBranchColors on;
					labelBranchLengths off;
					centerBrLenLabels on;
					showBrLensUnspecified on;
					showBrLenLabelsOnTerminals on;
					setBrLenLabelColor 0 0 255;
					setNumBrLenDecimals 6;
					desuppress;
					getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames;
					tell It;
						setColor Black;
						toggleColorPartition off;
						toggleColorAssigned on;
						toggleShadePartition off;
						toggleShowFootnotes on;
						toggleNodeLabels on;
						toggleCenterNodeNames off;
						toggleShowNames on;
						namesAngle ?;
					endTell;
				endTell;
					setTreeNumber 1;
					setDrawingSizeMode 0;
					toggleLegendFloat on;
					scale 0;
					toggleTextOnTree off;
					togglePrintName on;
					showWindow;
				endTell;
				desuppressEPCResponse;
				getEmployee #mesquite.trees.ColorBranches.ColorBranches;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.ornamental.BranchNotes.BranchNotes;
				tell It;
					setAlwaysOn off;
				endTell;
				getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition;
				tell It;
					colorByPartition off;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles;
				tell It;
					setOn on;
					setDigits 4;
					writeAsPercentage off;
					toggleCentred off;
					toggleHorizontal on;
					toggleWhiteEdges on;
					toggleShowOnTerminals on;
					setFontSize 10;
					setOffset 0  0;
				endTell;
				getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings;
				tell It;
					setOn on;
					toggleCentred on;
					toggleHorizontal on;
					setFontSize 10;
					setOffset 0  0;
					toggleShowOnTerminals on;
				endTell;
				getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues;
				tell It;
					panelOpen false;
				endTell;
			endTell;
		endTell;
		getEmployee  #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord;
		tell It;
			showDataWindow #2535608153950362420 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker;
			tell It;
				getWindow;
				tell It;
					setExplanationSize 30;
					setAnnotationSize 20;
					setFontIncAnnot 0;
					setFontIncExp 0;
					setSize 1339 392;
					setLocation 8 8;
					setFont SanSerif;
					setFontSize 10;
					getToolPalette;
					tell It;
						setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam;
					endTell;
					setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam;
					colorCells  #mesquite.charMatrices.NoColor.NoColor;
					colorRowNames  #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor;
					colorColumnNames  #mesquite.charMatrices.CharGroupColor.CharGroupColor;
					colorText  #mesquite.charMatrices.NoColor.NoColor;
					setBackground White;
					toggleShowNames on;
					toggleShowTaxonNames on;
					toggleTight off;
					toggleThinRows off;
					toggleShowChanges on;
					toggleSeparateLines off;
					toggleShowStates on;
					toggleAutoWCharNames on;
					toggleAutoTaxonNames off;
					toggleShowDefaultCharNames off;
					toggleConstrainCW on;
					toggleBirdsEye off;
					toggleShowPaleGrid off;
					toggleShowPaleCellColors off;
					toggleShowPaleExcluded off;
					togglePaleInapplicable on;
					toggleShowBoldCellText off;
					toggleAllowAutosize on;
					toggleColorsPanel off;
					toggleDiagonal on;
					setDiagonalHeight 80;
					toggleLinkedScrolling on;
					toggleScrollLinkedTables off;
				endTell;
				showWindow;
				getWindow;
				tell It;
					forceAutosize;
				endTell;
				getEmployee #mesquite.charMatrices.AlterData.AlterData;
				tell It;
					toggleBySubmenus off;
				endTell;
				getEmployee #mesquite.charMatrices.ColorByState.ColorByState;
				tell It;
					setStateLimit 9;
					toggleUniformMaximum on;
				endTell;
				getEmployee #mesquite.charMatrices.ColorCells.ColorCells;
				tell It;
					setColor Red;
					removeColor off;
				endTell;
				getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel;
				tell It;
					togglePanel off;
				endTell;
				getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector;
				tell It;
					autotabOff;
				endTell;
				getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip;
				tell It;
					showStrip off;
				endTell;
				getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor;
				tell It;
					panelOpen true;
				endTell;
			endTell;
		endTell;
		endTell;
end;