#NEXUS [written Mon Dec 05 11:00:44 MST 2016 by Mesquite version 3.03 (build 702) at Macintosh-2.local/10.0.1.3] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=16; TAXLABELS 1486CarZon_CalMau 816CarZon_CalRuf 287CarZon_CalCan 1482CarZon_CalMin 954CarZon_CalAcu 775CarMei_CalAlp 224CarMei_CalAlp 19CarMei_CalAlp 515CarSca_PhiMac 493AnaCra_AnaStr 464AnaRhe_BraBer 462AnaSp_BraBer 276QuaAur_HaeOst 216SaeSte_SteHir 215SaeLoc_StePar 69QuaObt_TriTot ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "Carduiceps phylogeny 16S.nex"'; DIMENSIONS NCHAR=526; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 1486CarZon_CalMau AGGTTTTTAATAGTCGAACAGACTAAAAATA-ATTATCTTCTTCATTAATATTTTAACCTAATTCAACATCGAGGTCGCAAACGTGGTAAAATATGAGGTCTACAGTACCA-CATAACGCTGTTATCCCTTAGGTAACTAAGTTTCTAATCTTAGATCCTT-TTCTAATCCA----TTTTTTTTTGATCTATTCATCTTTTTCCAATCTAAAGTTTT----CATT-AAGGTTCTTCCCAAACAAATACAAGAA---AGAAATA--TAACAATTAGCACTTTACTTATTTCTCC-TTTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCTTTCACGAAGGGATTTTCACCATCTTTCTAAATTCAAT---TGTTATAATCGAGACAGATGAATCCTCGTCAAACCGTTCATTCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTAATACTGCAGCTATTTACAATATGGCAGGGAGCAGGTCCGACCTTAAATCCATTTCTAAAGGAC 816CarZon_CalRuf AGGTTTTTAATAGTCGAACAGACTAAAAATA-ATTATCTTCTTCATTAATATTTTAACCTAATTCAACATCGAGGTCGCAAACGTGGTAAAATATGAGGTCTACAGTACCA-CATAACGCTGTTATCCCTTAGGTAACTAAGTTTCTAATCTTAGATCCTT-TTCTAATCCA----TTTTTTTTTGATCTATTCATCTTTTTCCAATCTAAAGTTTT----CATT-AAGGTTCTTCCCAAACAAATACAAGAA---AGAAATA--TAACAATTAGCACTTTACTTATTTCTCC-TTTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCTTTCACGAAGGGATTTTCACCATCTTTCTAAATTCAAT---TGTTATAATCGAGACAGATGAATCCTCGTCAAACCGTTCATTCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTAATACTGCAGCTATTTACAATATGGCAGGGAGCAGGTCCGACCTTAAATCCATTTCTAAAGGAC 287CarZon_CalCan AGGTTTTTAATAGTCGAACAGACTAAAAATA-ATTATCTTCTTCATTAATATTTTAACCTAATTCAACATCGAGGTCGCAAACGTGGTAAAATATGAGGTCTACAGTACCA-CATAACGCTGTTATCCCTTAGGTAACTAAGTTTCTAATCTTAGATCCTT-TTCTAATCCA----TTTTTTTTTGATTCATTCATCTTTTTCCAATCTAAAGTTTT----CATT-AAGGTTCTTCCCAAACAAATACAAGAA---AGAAATA--TAACAATTAGCACTTTACTTATTTCTCCTTTTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCTTTCACGAAGGGATTTTCACCATCTTTCTAAATTCAAT---TGTTATAATCGAGACAGATGAATCCTCGTCAAACCGTTCATTCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTAATACTGCAGCTATTTACAATATGGCAGGGAGCAGGTCCGACCTTAAATCCATTTCTAAAGGAC 1482CarZon_CalMin AGGTTTTTAATAGTCGAACAGACTAAAAATA-ATTATCTTCTTCATTAATATTTTAACCTAATTCAACATCGAGGTCGCAAACGTGGTAAAATATGAGGTCTACAGTACCA-CATAACGCTGTTATCCCTTAGGTAACTAAGTTTCTAATCTTAGATCCTT-TTCTAATCCA---TTTTTTTTTTGATCTATTCATCTTTTTCCAATCTAAAGTTTT----CATT-AAGGTTCTTCCCAAACAAATACAAGAA---AGAAATA--TAACAATTAGCACTTTACTTATTTCTCC--TTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCTTTCACGAAGGGATTTTCACCATCTTTCTAAATTCAAT---TGTTATAATCGAGACAGATGAATCCTCGTCAAACCGTTCATTCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTAATACTGCAGCTATTTACAATATGGCAGGGAGCAGGTCCGACCTTAAATCCATTTCTAAAGGAC 954CarZon_CalAcu AGGTTTTTAATAGTCGAACAGACTAAAAATA-ATTATCTTCTTCATTAATATTTTAACCTAATTCAACATCGAGGTCGCAAACGTGGTAAAATATGAGGTCTACAGTACCA-CATAACGCTGTTATCCCTTAGGTAACTAAGTTTCTAATCTTAGATCCTT-TTCTAATCCA---TTTTTTTTTTGATTCATTCATCTTTTTCCAATCTAAAGTTTT----CATT-AAGGTTCTTCCCAAACAAATACAAGAA---AGAAATA--TAACAATTAGCACTTTACTTATTTCTCC-TTTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCTTTCACGAAGGGATTTTCACCATCTTTCTAAATTCAAT---TGTTATAATCGAGACAGATGAATCCTCGTCAAACCGTTCATTCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTAATACTGCAGCTATTTACAATATGGCAGGGAGCAGGTCCAACCTTAAATCCATTTCTAAAGGAC 775CarMei_CalAlp AGGTTTTTAATAGTTGAACAGACTAAAAATT-ATTATTTTCTTCTTTAATATTTTAACCTAATTCAACATCGAGGTCGCAAGCGTAGTATAATATACGGTCTAGAATACCA-GATAACGCTGTTATCCCTTAGGTATCTAAGTTTCTAATCTTAGATTATTGATCTAATCCA-TTTTTTTTTTTCGATTTACTGATCTTTTTTTAATCTGAAGTTTT----CATCAAAGGTTCTTCCCAAACAAATGTAAGAA---ATAAAA---TTTAATCTAATATTTAAT---TTTCTCC-TTTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCCTTCATGAAGGGATTTTCACCATCATTCTAAGTTCGAT---TAGTATAATTGAGACAGATGAATCCTCGTCAGACCGTTCATGCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTTATACTGCAGCTATTTACTTTTGAGCAGGGAGCAGGCCCGACCTTAAATTAATTTCAAAAGGAC 224CarMei_CalAlp AGGTTTTTAATAGTCGAACAGACTAAAAATT-ATTATTTTCTTCTTTAATATTTTAACCTAATTCAACATCGAGGTCGCAAGCGTAGTATAATATACGGTCTAGAATACCA-GATAACGCTGTTATCCCTTAGGTATCTAAGTTTCTAATCTTAGATTATTGATCTAATCCA-TTTTTTTTTTTCGATTTACTGATCTTTTTTTAATCTGAAGTTTT----CATCAAAGGTTCTTCCCAAACAAATGTAAGAA---ATAAAA---TTTAATCTAATATTTAAT---TTTCTCC-TTTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCCTTCATGAAGGGATTTTCACCATCATTCTAAGTTCGAT---TAGTATAATTGAGACAGATGAATCCTCGTCAGACCGTTCATGCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTTATACTGCAGCTATTTACTTTTGAGCAGGGAGCAGGCCCGACCTTAAATTAATTTCAAAAGGAC 19CarMei_CalAlp AGGTTTTTAATAGTCGAACAGACTAAAAATT-ATTATTTTCTTCTTTAATATTTTAACCTAATTCAACATCGAGGTCGCAAGCGTAGTATAATATACGGTCTAGAATACCA-GATAACGCTGTTATCCCTTAGGTATCTAAGTTTCTAATCTTAGATTATTGATCTAATCCA--TTTTTTTTTTCGATTTACTGATCTTTTTTTAATCTGAAGTTTT----CATCAAAGGTTCTTCCCAAACAAATGTAAGAA---ATAAAA---TTTAATCTAATATTTAAT---TTTCTCC-TTTTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTCCTTCATGAAGGGATTTTCACCATCATTCTAAGTTCGAT---TAGTATAATTGAGACAGATGAATCCTCGTCAGACCGTTCATGCCAGTCTTCATTTAAAAGACAAATTATTATGCTACCTTAGTACAGTCATTTATACTGCAGCTATTTACTTTTGAGCAGGGAGCAGGCCCGACCTTAAATTAATTTCAAAAGGAC 515CarSca_PhiMac AGGTTTTTAATAGTCGAACAGACTAAAAATTCATTATCTTCTTCATCAATATTTTAACCTAATTCAACATCGAGGTCGTAAACGTGGTAAAATATGCGATCTACAATACCA-AATAACGCTGTTATCCCTTAGGTAACTAAGTTTCTAATTTCAGGTTTCTAGGGTGCCTGA-CTCCTTGATTTTGACTTATTATTCTTTTTTACATCTGAAGTTTC----CATC-TAGGTTCTTCCCAAACAATTACGAGAA---ATAATTAAATACTAATTGTATTTTAAC---TTTCA---CTCTTTTAGATCTAAAGGGTCTTGTCGTCCCCCTTTCCCATGAGGGGATTTTCACCATCATTCTAAATTCAAC---TTTTATAATCGAGACAGATTGACCCTCGTCAAACCGTTCATGCCAGTCTTCATTTAAAAGACAAGTTATTATGCTACCTTAGTACAGTCATTTATACTGCAGCTATTTAC--TCAAGCAGGGAGCAGGCTCGACCTTAAATTTATTTCAAAAGGAC 493AnaCra_AnaStr AAGTATTTAATAGTCGAGCAGACTAACTTGA-TAAC-TTTCTTCATCTATCAGTAAACTTAATTCAACATCGAGGTCACAACCTTCACTATTCAAATGGTCTAAATAGTAATAATTGTGCTGTTATCCCTAAGGTAACTTTTTCTAATTATCTA-------TCCAAGGATCA-TTAATTTAATTAATT------ATTGTTTATTTATCTAAAGTTAATTAGTTTT-GAGGTCCATCCCAGACAACCTTGCTCA---AGGTAACAACGTTATATTGA------------------ACAGTAAAGATCTATAGGGTCTTGTCGTCCCTCCAGTTTAACTAAGCTTTTTTACTTAAAGATAAAGTTCATA---TATTACTGTAGAGACAGTTAATCTCTCGTGAATTCATTCATTCTAGACCCCAATTAAGAGACAAATTATTATGCTACCTTAGTACAGTTA-GGATACTGCAGCTATTTAC--TAAAGCACTGAGCAGAAGTGACCTTGTATTCTTCTAACAAGGCG 464AnaRhe_BraBer AAGTGTTTAATAGTCGAGCAGACTAACTTAA-TAAC-CTTCTTCATTTATTAGTAAACTTAATTCAACATCGAGGTCACAACCTTTACTATTCAAATGGTCTAAATAGTAATAATTGTGCTGTTATCCTTAAGGTAACTATTTCTAATTATCTA-------TAAAAGGATCATTTAATTGAACTGATT------ATTGTTCATTTATCTAAAGTTATATAGTTTT-GAGGTTCATCCCAAACAACCTTACCTA---TGTATAATATA-TACATGGA------------------TAAGTTAAGATCTATAGGGTCTTGTCGTCCCTCCAATAAATTTAAGCTTTTTGACTTAACGATAAATTTCATT---AATTACAATAGAGACAGTTAGTTTTTCGTGAATTCTTTCATTCTAGACCTCAATTAAAGGACAAATTATTATGCTACCTTAGTACAGTTA-GAATACCGCAGCTATTAAC---TTTGCATTGAGCAGAAATGACCTTATATACTATCATAAGGCG- 462AnaSp_BraBer AAGCTTTTAATAGTCGAGCAGACTAACTAAT-TAAA-TTTCTACTTTCAATAGTTAACTTAATTCAACATCGAGGTCATAATCTCCCCCACAAATAAGATCTCTGTGGGGG-AATTATGCTGTTATCCCTTAGGTAACTTTTTCTTCATATCCA-----TTCTAAGGGATCA-TTAATTTAATTAATG------ATTTTTTTATTATCTATAGATAA-AAATTAT-TAGATCCGTCCCAGATAAATTTATAT----TCATCTTCTCAAGAAAAATA------------------TAAATAAAGATCTAAAGGGTCTTCTCGTCCCTCCTAATCAAGTGGGATTTTTCACCAACTTATTAATTTATTA---AACTATAAAAAAGACAGTTTTAATTCCGTCTAACCTTTCATTCCAGCTTTCAATTAAAAAACTAATTATTATGCTACCTTAGTACAGTCA-AGTTACTGCAGCAATTAAC--TTACGCATTGAGCAGGTCGGACCTTAAATAATTAATTAAGGAC- 276QuaAur_HaeOst AAGTTTTTAATGGTCGAACAGACCCACTTTT-CTTCATCTTTGCTTGAAGAAGATAACTTAATTCAACATCGAGGTCACAAGACTTTCCCTTCAAAAGGACTGAAGAGAGA-GATTGTGCTGTTATCCCTGAGGTAGCTTTTTCCTCCTCTCGC----CCGAAAGCGGCTCG-TCTTTCCGAAGAAAT-------CTTTGCAATTTACGATCGTTTTCTAA-----TCGTTCCTTCCCAGATAAATTCGAACCGATTCTCTCCATTACAAATCGTT------------------CAAATAAAGTTCTACAGGGTCTTTTCGTCCCCCTTTTCCATCTAGGAATTTTTACCCAAACTCTAGATTCAGACAAACAAGAGAGAGAGACAGATGAAAGAAAGTCAACCCTTTCATTCCAGACTCCATTCAAAAGCCAAATTATTATGCTACCTTTGCACAGTCA-GAATACTGCAGCTATTCACGTTTCCGCATCGAGCAGGGCCTACCTTCCATCCTTTCGAAAGGAG- 216SaeSte_SteHir AAGTTTTTAATTGTCGAACAGACAAACCTTT-TTTC-CTTCTACGTAAAAAGGGAAACTTAATTCAACATCGAGGTCGCAAACTCCTCACGCCCTAAGGTCGAGAGTGAGG-TATCGCGCTGTTATCCCTAAGGTAACTTTTTTTCTTTTTCCC-----TACGGTGGGGATC-AT----TTGTTTAACAAATGAGTTTTTTAGTTAGCAATCGTTTG-CTA-GTT-GTGTTTCGTCCCAAACAAAACCCATCC---CTGATTGGTTGAAAAGTGAT------------------GGGTTTAAGATCTATAGGGTCTTCTCGTCCCTCTCTCAAATCTAGGAGTTTGAACCTAGGCCTAAAGTTCAGT---TTATAGAAATGGAACAGTTGAGAGCCTGTCAACCCATTCATTCTGGACCTCATTTAAAGGCCAATTGACTTTGCTACCTTTGCACAGTTA-AGATACTGCGGCCGTTTACAGTA-CGCACTGGGCAGGGCCTACCTCTTATCATATCAAGAGGAG- 215SaeLoc_StePar AAGTTTTTAATTGTCGAACAGACAAACCTTT-CTTC-TTTCTACGTAAGAAGGAAAACTTAATTCAACATCGAGGTCACAAGCTCCCCACCCCCTAAGGTCGAAGGTGGGG-GATTGTGCTGTTATCCCTAAGGTAACTTTTTCTTTTTTTCCC----TTATAAAGGGGATC-GTGTTATAGATTAACAGATCAGTTTTTCAATTAGCAAACGTTTG-CTA-GTT-GTGTTTCATCCCAAACAAAACCCATCC---CTGATGGTTTAAAAAGGAAT------------------GGGTTTAAGATCTATAGGGTCTTCTCGTCCCTCTCTCAAATCTAGGAGTTTGAACCTAGGCCTAAAGTTCAGT---TTATAGAAATGGAACAGTTGAGAGCCTGTCAACCCATTCATTCTGGACCCCAATTAAAGGCCAATTGATTTTGCTACCTTTGCACAGTTA-AAATACTGCGGCCGTTTACAGTATTGCACTGGGCAGGGCCTACCTCTTATCTTATCAAGAGGAG- 69QuaObt_TriTot AAGCTTTTAATAGTCGAACAGACTAACCCTC-CTTC-TCTCTCCTTAAGTAGGGCAGCTTAATTCAACATCGAGGTCACAGACTCCCCCTCCCATAAGTACTGGGAGGAGG-AATTGTGCTGTTATCCCTAAGGAAACTTTCCTTCTTTTCCCA-----TAAAAGGGGCTCT-TCATCCTAGTCTAAT---CAGACTTCCCTATTAACGAGTGTTCA-CTGTACT-TCGTTTCATCCCAAATAACCCCCCCTC---ACTCCCTCCTTAGAGAGGAG------------------GGGGGCCAGTTCTATAGGGTCTTGTCGTCCCTCTCCCTCATTCAGGGGTTTTAACCTGAAACCGAATTTAAAA---ACCTTCAAAGAAGAAAGTTGGGCGCTTGTCAACCCTTTCATCCTAGACTCCAATTAAGAGCCAATTGATTATGCTACCTTAGCACAGTCA-GAGTACTGCGGCCATTGACTTCACAGCATCGGGCAGGGCCTACCTTCTATTCTATCAGAAGGAG- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'Matrix in file "Carduiceps phylogeny 16S.nex"') = unord: 1 - 526; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'Matrix in file "Carduiceps phylogeny 16S.nex"') = universal: 1 - 526; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'Matrix in file "Carduiceps phylogeny 16S.nex"') = 'Jukes-Cantor': 1 - 526; END; BEGIN TREES; Title NJ; LINK Taxa = Taxa; TRANSLATE [0] 1 1486CarZon_CalMau, [1] 2 816CarZon_CalRuf, [2] 3 287CarZon_CalCan, [3] 4 1482CarZon_CalMin, [4] 5 954CarZon_CalAcu, [5] 6 775CarMei_CalAlp, [6] 7 224CarMei_CalAlp, [7] 8 19CarMei_CalAlp, [8] 9 515CarSca_PhiMac, [9] 10 493AnaCra_AnaStr, [10] 11 464AnaRhe_BraBer, [11] 12 462AnaSp_BraBer, [12] 13 276QuaAur_HaeOst, [13] 14 216SaeSte_SteHir, [14] 15 215SaeLoc_StePar, [15] 16 69QuaObt_TriTot; TREE NJ = (14:0.0971807,15:0.00000112,(16:0.32391325,(13:0.38860307,((((3:0.00000001,5:0.00203115)0.618000:0.00186044,(9:0.15388956,(8:0.00000001,(7:0.00000001,6:0.00205915)0.000000:0.00000001)0.993000:0.08746059)0.992000:0.07462875)0.000000:0.00000506,(1:0.00000001,(2:0.00000001,4:0.00000016)0.000000:0.00000016)0.000000:0.00220919)1.000000:1.05980957,((10:0.13788874,11:0.11114445)0.977000:0.35877806,12:0.53646069)0.579000:0.24226659)0.916000:0.35670078)0.789000:0.16274163)0.999000:0.35397783); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1480960844742; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7141258047502353045; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6245276259187934704; mqVersion 303; checksumv 0 3 2602375377 null getNumChars 526 numChars 526 getNumTaxa 16 numTaxa 16 short true bits 15 states 15 sumSquaresStatesOnly 203734.0 sumSquares 203734.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1066 590; setLocation 10 27; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7141258047502353045 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 3463.1480960808604.6191628523834705225; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 966 518; setLocation 10 27; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6245276259187934704 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 966 518; setLocation 10 27; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;