#NEXUS [written Wed Dec 14 23:42:47 SGT 2016 by Mesquite version 3.11 (build 766) at in-mal01-wxp063/192.168.1.106] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=36; TAXLABELS Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF5 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF5 Porcine_reproductive_and_respiratory_syndrome_virus._ATCC_VR_2332_U87392 Porcine_reproductive_and_respiratory_syndrome_virus._JNHS_HM016158 Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 Porcine_reproductive_and_respiratory_syndrome_virus._4034_2_V_2008_FJ972733 Porcine_reproductive_and_respiratory_syndrome_virus._5112HCM_HQ700878 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 Porcine_reproductive_and_respiratory_syndrome_virus._MLV_RespPRRS_AF159149 Porcine_reproductive_and_respiratory_syndrome_virus._PL97_1_AY585241 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L232_2012_KF698649 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L167_2011_KF698648 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C204_2012_KF698646 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C182_2011_KF698645 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C044_2010_KF698642 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C008_2008_KF698641 Porcine_reproductive_and_respiratory_syndrome_virus._HCMC_3341_HQ540647 'Porcine reproductive and respiratory syndrome virus. HCMC-3867 HQ540654' Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029 Porcine_reproductive_and_respiratory_syndrome_virus._347_T_KS_AB588636 Porcine_reproductive_and_respiratory_syndrome_virus._DN694_JQ860366 Porcine_reproductive_and_respiratory_syndrome_virus._BD_R1_JQ860381 Porcine_reproductive_and_respiratory_syndrome_virus._DT9_JQ860389 Porcine_reproductive_and_respiratory_syndrome_virus._CT_C2_JQ860383 Porcine_reproductive_and_respiratory_syndrome_virus._HG_RV2_JQ860391 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 Porcine_reproductive_and_respiratory_syndrome_virus.YD_JF748717 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718_ Porcine_reproductive_and_respiratory_syndrome_virus._JilinTN1_JN157760 'Porcine reproductive and respiratory syndrome virus. MD-001 AF121131' Porcine_reproductive_and_respiratory_syndrome_virus._Miyagi08_2_AB546105 Porcine_reproductive_and_respiratory_syndrome_virus._EDRD_1_D45852 Porcine_reproductive_and_respiratory_syndrome_virus._02PB1_AY297116 ; END; BEGIN CHARACTERS; TITLE ORF5_Sequence_Alignment; LINK TAXA = Taxa; DIMENSIONS NCHAR=604; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF5 ATGTTGGGGGAGTGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCGGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCAATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF5 ATGTTGGGGAAATGCTTGACCGGGGGCTGTTGCTCGTCATCGCTTTTTTTGTGGTGTATCGTGCCGTTTTGTCTTGCTGCGCTCGTCAGCGCCAACAACAACCACAGCTCCCATTTACAATTGATTTATAAATTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGGTAACAAATTCGATTGGGCTGTTGAGACTTTTGTCATCTTCCCTGTGATAACCCATATTGTTTCTTATGGTGCCCTTACCACCAGCCATTTCCTTGACACGGTCGCTTTAGTCACTGTGTCTACCGCCGGATATTATCACGAGCGGTATGTTTTGAGTAGCATCTACGCGGTTTGTGCCCTGGCCGCGTTGATTTGCTTTGTCATTAGATTGACGAAGAATTGCATGTCTTGGCGCTACTCTTGTACTAGGTACACCAACTTCCTTTTGGACACCAAGGGCAGGCTCTATCGCTGGCGGTCGCCCGTCATCATAGAGAAAGAGGGTAAGGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAAAGTTTCAGCGGAACGATGGGGTCGTCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._ATCC_VR_2332_U87392 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._JNHS_HM016158 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCGGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACTATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._4034_2_V_2008_FJ972733 ATGTTGGAGAAATGCTTGACCGCGGGCTATTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCGACAACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTCTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTCGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._5112HCM_HQ700878 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAATTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTAGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 ATGTTGGGGAAATGCTTGACCACGGGCTGTTGCTCGCGATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGTCAACGCCAACAGCAACAGCAGCTCTCATTTTCAGTTGATTTATAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCTAACAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTTCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGTCACTGTGTCCACCGCCGGGTTTTATCACGGGCGGTATGTCTTGAGTAGCATCTACGCGGTCTGTGCTCTGGCTGCGTTGATTTGCTTCGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTTATTGTAGAGAAAGGGGGTAAGGTTGAGGTCGAGGGTCACCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._MLV_RespPRRS_AF159149 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCGGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._PL97_1_AY585241 ATGTTGGAGAAATGCTTGACCGCGGGCTGTTGCTCGCAATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTGTTTTGCTGTGCTCGCCAACGCCAGCAACGACAGCAGCTCCCATCTACAGCTGATTTACAACTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTAGCTAACAAATTTGATTGGGCTGTGGAGAGTTTTGTCATCTTTCCCGTTTTGACTCACATTGTCTCCTATGGTGCCCTCACTACCAGCCATTTCCTTGACACAGTCGCTTTAGTCACTGTGTCTACCGCCGGGTTTGTTCACGGGCGGTATGTCCTAAGTAGCATCTACGCGGTCTGTGCCCTGGCTGCGTTGACTTGCTTCGTCATTAGGTTTGCAAAGAATTGCATGTCCTGGCGCTACGCGTGTACCAGATATACCAACTTTCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATCATAGAGAAAAGGGGCAAAGTTGAGGTCGAAGGTCATCTGATCGACCTCAAAAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTATAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L232_2012_KF698649 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAGCAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATTTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACTAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L167_2011_KF698648 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAGAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGCCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCCCTGGCTGCGCTGATTTGCTTTGCCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTAGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGGAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C204_2012_KF698646 ATGTTGGGGAAGTGCTTGACCGCGTGCTACTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTGTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCATCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C182_2011_KF698645 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTTCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCATCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C044_2010_KF698642 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATTTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGATACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C008_2008_KF698641 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGATTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATCATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCTGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTCATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._HCMC_3341_HQ540647 ATGTTGGGGAAGTGCTTGACCGCGCGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTCCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGAAAGAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTTACTACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCTACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGTTGATTTGCTTTGTCATCAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCCTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGCAAGGTTGAGGTCGAAGGTCATCTCATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCCTAG- 'Porcine reproductive and respiratory syndrome virus. HCMC-3867 HQ540654' ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAATTTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTAGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGATTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCCTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTTAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCGGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._347_T_KS_AB588636 ATGTTGGGGAGGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._DN694_JQ860366 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCGGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACAGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._BD_R1_JQ860381 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTGTCTTGCTGTGCTCGTCAACGCCAGCAACAGCAGCAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCAAAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCTACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGACTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTCATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._DT9_JQ860389 ATGTTGGGGAAGTGCTTGACCGCGTGCTATTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTTTATCTTGCTGTGCTCGCCAACGCCAACAACAGCAGCAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGTTGGCACAAAATTTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACTACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGAGCGGTATGTCTTGAGCAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACTAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGCTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCGACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._CT_C2_JQ860383 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCGCAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTTACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTRATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._HG_RV2_JQ860391 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTTACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAAGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCTTTCTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAGATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACAGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTGTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGTGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 ATGTTGGGCAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGCCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAGAAAGGGCGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGCTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus.YD_JF748717 ATGTTGGGGAAGTGCATGACCGCGTGCTGTTGCTCGCGATTGCCTTTTTTGTGGTGTATCGTGCCGTCCTATCTTGCTGTGCTCGTCAACGCCAGCAACAACAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGCGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGGGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTGGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATTGTGGAAAAAAGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACTATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718_ ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTACAACTTAACACTATGTGAGCTGAATGGCACAGATTGGCTGGCAAAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGAGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGTTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCAGAACAATGGGGTCGTCTCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._JilinTN1_JN157760 ATGTTGGGGAAGTGCTTGACCGCGTGCTGTTGCTCGCGATTGCTTTTTTTGTGGTGTATCGTGCCGTTCTATCTTGCTGTGCTCGCCAACGCCAGCAACAGCAACAGCTCTCATATTCAGTTGATTTATAACTTAACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCACAAAAATTTGACTGGGCAGTGGAGACTTTTGTCATCTTCCCCGTGTTGACTCACATTGTTTCCTATGGAGCACTCACCACCAGCCATTTCCTTGACACAGTTGGTCTAGCCACTGTGTCCACCGCCGGATATTATCACGGGCGGTATGTCTTGAGTAGCATTTACGCAGTCTGTGCTCTGGCTGCGCTGATTTGCTTTGTCATTAGGCTTGCGAAGAACTGCATGTCCTGGCGCTACTCTTGTACCAGATATACCAACTTCCTTCTGGACACTAAGGGCAGACTCTATCGTTGGCGGTCACCCGTCATTGTGGAGAAAGGGGGTAAGGTTGAGGTCGAAGGTCACCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTTTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCTCTAG- 'Porcine reproductive and respiratory syndrome virus. MD-001 AF121131' ATGTTGGGGAACTGCTTGACCGTGGGCTGTTGCTCGCGGTCGCTTTTTTTGTGGTGTATCGTGCCGTTCTGTTTAGCTGCGCTCGTCAGCGCCAACGGAAACAGCAGCTCTTATTCCCAGTTGATTTATAACCTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCAAAAAAATTTGATTGGGCAGTGGAGACTTTTGTTATCTTTCCCGTGATTACTCACATCGTTTCCTACGGTGCCCTTACTACCAGCCACCTCCTTGATACAGTTGGTCTGGTCACTGTATCCACCGCCGGGTTCTATCACGGGCGGTATGTCTTGAGTAGCATCTATGCGGTCTGTGCCCTGGCTGCGCTAATTTGCTTCGTCATTAGACTGGCGAAGAATTGCATGTCCTGGCGCTACTCATGTACCAGGTACACCAACTTTCTTCTAGATACTAAGGGCAGAATTTATCGTTGGCGATCGCCCGTCATCATAGAGAAAGGGGGTAAAGTTGAGGTCGAAGGCCATTTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTGTAACCAGAATTCCAGCGGAACGATGGGGTCGTCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._Miyagi08_2_AB546105 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTTGCGATTGCCTTTTTCGTGGTGTATCATGCCGTTCTGTCTTGCTGTGCTCGTCAACGCCAACGGCAACAGCAGCTCTCATTTACAGTTGATTTATAACTTGACGTTATGTGAGCTGAACGGCACAGATTGGCTGGCTGGTAATTTTGATTGGGCAGTGGAGAGTTTCGTTATTTTCCCTGTACTGACTCATATTGTTTCCTATGGCGCCCTCACCACTAGCCATTTCCTCGACACAGTTGGCTTGGTCACTGTGTCTACCACCGGTTTTTACCATGAGCGGTATGTTCTGAGTAGCATTTATGCGGTTTGTGCCCTGGCCGCATTGATTTGCTTCGTCATTAGGTTGACGAAGAACTGCATGTCCTGGCGCTACTCATGTACTAGATATACCAACTTCCTCCTGGACACCAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATCATAGAGAAAGGAGGCAAAGCTGAGGTTGAAGGTCATTTGATTGACCTAAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTATAACCAAAGTTTCAGCGGAACAATGGGGTCGTCCTTAG- Porcine_reproductive_and_respiratory_syndrome_virus._EDRD_1_D45852 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCGATTGCCTTTTTTGTGGTGTATCGTGCCGTTCTGTCTTGCTGTGCTCGTCAACGCCAGCGACAGCAGCAGCTCCCATTTACAGTTGATTTATAACCTGACGCTATGTGAGCTGAATGGCACAGATTGGCTGGCTGACAAATTTGATTGGGCAGTGGAGAGTTTTGTCATCTTTCCCGTGTTGACTCACATTGTTTCTTACTGCGCCCTCACTACCAGCCACTTCCTTGACACAGTTGGTCTGGTCGCTGTGTCTACCGCCGGGTTTTACCACGGGCGGTATGTTCTGAGTAGCATCTATGCGGTCTGTGCCCTGGCTGCGTTGGTTTGCTTCGTCATCAGATTGACGAAGAATTGCATGTCCTGGCGCTACTCATGTACCAGATATACCAACTTTCTTCTGGATACCAAGGGCAGACTCTATCGTTGGCGGTCGCCCGTCATCATAGAGAAAGGGGGTAAGGTTGAGGTTGAAGGTCATCTGATCGACCTCAAGAGAGTTGTGCTTGATGGTTCCGCGGCAACCCCTATAACCAAAGTTTCAGCGGAACAATGGGGTCATCCCTAG- Porcine_reproductive_and_respiratory_syndrome_virus._02PB1_AY297116 ATGTTGGGGAAATGCTTGACCGCGGGCTGTTGCTCGCAAT?GCCTTTTTTGTGGTATATCGCCCCGTTCTGTTTTGCTGCGCTCGTCAGCGCCAGCAACGGCAGCAGCTCCCACTTACAGTTGATCTATAACCTGACGATATGTGAGCTGAACGGCACAGAGTGGCTGAATGAAAGTTTTGATTGGGCAGTGGAAACCTTTGTCATTTTTCCCGTGTTGACTCATATAGTCTCCTACGGCGCCCTCACCACCAGTCACTTCCTTGATACAGTCGGTCTGACCACCGTGGCTACCGCCGGGTATTACCATGGGCGGTATGTCTTGAGCAGCATCTACGCCGTATGTGCCTTAGCTGCGCTGATTTGCTTCATCATTAGGTTGGCAAAGAACTGTATGTCCTGGCGCTATTCATGTACCAGATATACCAACTTCATTCTGGACACCAAAGGCAAGCTCTATCGTTGGCGATCGCCTGTCATCATAGAGAAAGGGGGCAAAGTTGAGGTTGAAGGACACCTAATTGACCTCAAGAGAGTTGTGCTCGATGGTTCCGCGGCTACCCCTGTAACCAGAGTTTCAGCGGAACAATGGGGTCGTCCCTAG- ; END; BEGIN TAXA; TITLE Taxa2; DIMENSIONS NTAX=27; TAXLABELS Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7 Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3 Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158 Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_ Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698 Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419 Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_ Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392 Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410 Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_ Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_ Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578 Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576 Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698 Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371 Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369 Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376 ; END; BEGIN CHARACTERS; TITLE ORF7_Sequence_Alignment; LINK TAXA = Taxa2; DIMENSIONS NCHAR=373; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7 ATGCCAAATAAYAACGGCAAGCAGCAGAAGAGAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGCAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCACTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACACACTGTGCGTCTGATTCGCGCCACAGCATCACCCCAAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAAACCCGAGAAGCCCCCATTTTCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCGGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACACACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 ATGCCAAATAACAACGGCAAGCAGCGAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAAGAAGAAAAGCCCGGAGAAGCCCCATTTTCCTCTAGCGACCGAAGATGACGTCAGGCATCACTTCACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTTAACCAGGGCGCCGGAACTTGTACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAACGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_ ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCTAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACTCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCTCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCATCATACTGTGCGTCTGATCCGCGCCACAGCATCACCTTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGCAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGCAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_ ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAATCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAATCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCTTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_ ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_ ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = ORF5_Sequence_Alignment) = unord: 1 - 604; TYPESET * UNTITLED (CHARACTERS = ORF7_Sequence_Alignment) = unord: 1 - 373; END; BEGIN NOTES; TAXABITS TAXA = Taxa NAME = newlyAddedTaxon on = 1 - 36; TAXABITS TAXA = Taxa2 NAME = newlyAddedTaxon on = 1 - 27; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = ORF5_Sequence_Alignment) = universal: 1 - 604; CODESET * UNTITLED (CHARACTERS = ORF7_Sequence_Alignment) = universal: 1 - 373; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = ORF5_Sequence_Alignment) = 'Jukes-Cantor': 1 - 604; ProbModelSet * UNTITLED (CHARACTERS = ORF7_Sequence_Alignment) = 'Jukes-Cantor': 1 - 373; END; BEGIN TREES; Title ORF5_Tree; ID 0158fdee0e911; LINK Taxa = Taxa; TRANSLATE [0] 1 Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF5, [1] 2 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF5, [2] 3 Porcine_reproductive_and_respiratory_syndrome_virus._ATCC_VR_2332_U87392, [3] 4 Porcine_reproductive_and_respiratory_syndrome_virus._JNHS_HM016158, [4] 5 Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183, [5] 6 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445, [6] 7 Porcine_reproductive_and_respiratory_syndrome_virus._4034_2_V_2008_FJ972733, [7] 8 Porcine_reproductive_and_respiratory_syndrome_virus._5112HCM_HQ700878, [8] 9 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626, [9] 10 Porcine_reproductive_and_respiratory_syndrome_virus._MLV_RespPRRS_AF159149, [10] 11 Porcine_reproductive_and_respiratory_syndrome_virus._PL97_1_AY585241, [11] 12 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L232_2012_KF698649, [12] 13 Porcine_reproductive_and_respiratory_syndrome_virus._NA_LAO_L167_2011_KF698648, [13] 14 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287, [14] 15 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C204_2012_KF698646, [15] 16 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C182_2011_KF698645, [16] 17 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C044_2010_KF698642, [17] 18 Porcine_reproductive_and_respiratory_syndrome_virus._NA_CAM_C008_2008_KF698641, [18] 19 Porcine_reproductive_and_respiratory_syndrome_virus._HCMC_3341_HQ540647, [19] 20 'Porcine reproductive and respiratory syndrome virus. HCMC-3867 HQ540654', [20] 21 Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029, [21] 22 Porcine_reproductive_and_respiratory_syndrome_virus._347_T_KS_AB588636, [22] 23 Porcine_reproductive_and_respiratory_syndrome_virus._DN694_JQ860366, [23] 24 Porcine_reproductive_and_respiratory_syndrome_virus._BD_R1_JQ860381, [24] 25 Porcine_reproductive_and_respiratory_syndrome_virus._DT9_JQ860389, [25] 26 Porcine_reproductive_and_respiratory_syndrome_virus._CT_C2_JQ860383, [26] 27 Porcine_reproductive_and_respiratory_syndrome_virus._HG_RV2_JQ860391, [27] 28 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165, [28] 29 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436, [29] 30 Porcine_reproductive_and_respiratory_syndrome_virus.YD_JF748717, [30] 31 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718_, [31] 32 Porcine_reproductive_and_respiratory_syndrome_virus._JilinTN1_JN157760, [32] 33 'Porcine reproductive and respiratory syndrome virus. MD-001 AF121131', [33] 34 Porcine_reproductive_and_respiratory_syndrome_virus._Miyagi08_2_AB546105, [34] 35 Porcine_reproductive_and_respiratory_syndrome_virus._EDRD_1_D45852, [35] 36 Porcine_reproductive_and_respiratory_syndrome_virus._02PB1_AY297116; TREE Imported_tree_1 = ((((((((((((((((12:0.0,25:0.01686885)0.5860:0.00334426,17:0.00166863)0.5270:0.00166783,(15:0.00334795,16:0.00166817)0.8020:0.00166736)0.5780:0.00166812,((8:0.0,20:0.0)0.9590:0.00500881,(14:0.0,22:0.00166549)0.3740:0.0)0.1050:0.0)0.0510:0.0,23:0.00333461)0.1610:0.0,(26:0.00333656,27:0.0)0.4960:0.0016655)0.4390:0.00166549,(13:0.01174071,(4:0.0,32:0.0)0.6410:0.0)0.2440:0.0)0.2660:0.0,31:0.01006909)0.8380:0.00503314,21:0.0067185)0.7420:0.00334306,(18:0.00501264,(19:0.0217329,24:0.00919243)0.3240:0.00297776)0.2790:0.00167769)0.0350:0.0,(29:0.00672141,(6:0.0,30:0.01007057)0.6180:0.00166935)0.2460:0.0)0.5340:0.00661188,28:0.00515231)0.9960:0.03166108,9:0.00830853)0.9760:0.02894979,(3:0.0,(7:0.00835792,(11:0.00166635,(1:0.00669527,(5:0.0,10:0.0)0.7730:0.0)0.4880:0.00166438)0.2960:0.0)0.3690:0.00166438)1.0000:0.05129345)0.3100:0.00801306,(2:0.08194515,33:0.07303037)0.2020:0.01328496)0.4050:0.00808196,(36:0.11266664,(34:0.07671839,35:0.02397157)0.5020:0.01324055)0.4050:0.0042419); END; BEGIN TREES; Title ORF7_Tree; ID 0158fdee955c2; LINK Taxa = Taxa2; TRANSLATE [0] 1 Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7, [1] 2 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7, [2] 3 Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3, [3] 4 Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158, [4] 5 Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183, [5] 6 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445, [6] 7 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626, [7] 8 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287, [8] 9 Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_, [9] 10 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165, [10] 11 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436, [11] 12 Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717, [12] 13 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718, [13] 14 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699, [14] 15 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698, [15] 16 Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419, [16] 17 Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_, [17] 18 Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392, [18] 19 Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410, [19] 20 Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_, [20] 21 Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_, [21] 22 Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578, [22] 23 Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576, [23] 24 Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698, [24] 25 Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371, [25] 26 Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369, [26] 27 Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376; TREE Imported_tree_1 = ((((((((((17:0.0,18:0.0)0.8330:0.00270378,16:0.00271456)0.5750:0.0027032,(1:0.01930034,4:0.00269981)0.5160:0.00264224)0.3390:0.0,8:0.00269971)0.0040:0.00223806,(14:0.0,15:0.0)0.2220:0.0)0.4970:0.0,19:0.00269764)0.8560:0.00818816,((9:0.00542274,11:0.00545264)0.1490:0.00060597,(6:0.0,(12:0.0,13:0.0)0.1860:0.0)0.2060:0.0)0.7700:0.0035538)0.8870:0.00830984,10:0.00535183)0.9380:0.01382699,7:0.01665389)1.0000:0.00085212,(2:0.0164737,((3:0.0,(5:0.0,(20:0.0,(21:0.0,(22:0.0,(23:0.0,(24:0.0,(25:0.0,26:0.0)0.0660:0.0)0.0130:0.0)0.0060:0.0)0.0050:0.0)0.0040:0.0)0.0020:0.0)0.0030:0.0)0.0170:0.0,27:0.0)0.3300:0.0006243)1.0000:0.03888405); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1481730167620; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 629622579645419300; setID 1 3695666121681345174; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8347534066514847043; mqVersion 311; checksumv 0 3 22304668 null getNumChars 604 numChars 604 getNumTaxa 36 numTaxa 36 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 524651.0 sumSquares 4.6116860184277156E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2; mqVersion; setID 1 621268471468820979; mqVersion 311; checksumv 1 3 3329347958 null getNumChars 373 numChars 373 getNumTaxa 27 numTaxa 27 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 176919.0 sumSquares -9.2233720368547717E18 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 2; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 233; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 682; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #629622579645419300 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTaxa #629622579645419300; setTreeBlock 1; setTreeBlockID 0158fdee0e911; toggleUseWeights off; endTell; setAssignedID 976.1481729084551.1401779328766033199; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1047 610; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #3695666121681345174 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTaxa #3695666121681345174; setTreeBlock 1; setTreeBlockID 0158fdee955c2; toggleUseWeights off; endTell; setAssignedID 1059.1481729992711.1803186394809744457; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1047 610; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale off; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines off; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors off; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat off; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #8347534066514847043 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 456; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1047 610; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #621268471468820979 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 664; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1047 610; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;